data_1XYN # _model_server_result.job_id 1c0asmMamtAIPjqVYbZPBQ _model_server_result.datetime_utc '2024-11-25 12:38:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xyn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 1XYN # _exptl.entry_id 1XYN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.8 _cell.angle_gamma 90 _cell.entry_id 1XYN _cell.length_a 72.25 _cell.length_b 39.01 _cell.length_c 54.3 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XYN _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 81 A ASP 81 1_555 B CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.917 ? metalc ? metalc2 A OD2 ASP 81 A ASP 81 1_555 B CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? metalc ? metalc3 A NE2 HIS 83 A HIS 83 1_555 B CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? metalc ? metalc4 C O HOH . A HOH 556 1_555 B CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.93 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1XYN _atom_sites.fract_transf_matrix[1][1] 0.013841 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000435 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025634 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018425 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 601 601 CA CA . C 3 HOH A 1 501 501 HOH HOH . C 3 HOH A 2 502 502 HOH HOH . C 3 HOH A 3 503 503 HOH HOH . C 3 HOH A 4 504 504 HOH HOH . C 3 HOH A 5 505 505 HOH HOH . C 3 HOH A 6 506 506 HOH HOH . C 3 HOH A 7 507 507 HOH HOH . C 3 HOH A 8 508 508 HOH HOH . C 3 HOH A 9 509 509 HOH HOH . C 3 HOH A 10 510 510 HOH HOH . C 3 HOH A 11 513 513 HOH HOH . C 3 HOH A 12 514 514 HOH HOH . C 3 HOH A 13 515 515 HOH HOH . C 3 HOH A 14 516 516 HOH HOH . C 3 HOH A 15 517 517 HOH HOH . C 3 HOH A 16 518 518 HOH HOH . C 3 HOH A 17 519 519 HOH HOH . C 3 HOH A 18 520 520 HOH HOH . C 3 HOH A 19 521 521 HOH HOH . C 3 HOH A 20 522 522 HOH HOH . C 3 HOH A 21 523 523 HOH HOH . C 3 HOH A 22 525 525 HOH HOH . C 3 HOH A 23 526 526 HOH HOH . C 3 HOH A 24 527 527 HOH HOH . C 3 HOH A 25 528 528 HOH HOH . C 3 HOH A 26 529 529 HOH HOH . C 3 HOH A 27 530 530 HOH HOH . C 3 HOH A 28 531 531 HOH HOH . C 3 HOH A 29 532 532 HOH HOH . C 3 HOH A 30 533 533 HOH HOH . C 3 HOH A 31 534 534 HOH HOH . C 3 HOH A 32 535 535 HOH HOH . C 3 HOH A 33 536 536 HOH HOH . C 3 HOH A 34 537 537 HOH HOH . C 3 HOH A 35 538 538 HOH HOH . C 3 HOH A 36 539 539 HOH HOH . C 3 HOH A 37 540 540 HOH HOH . C 3 HOH A 38 541 541 HOH HOH . C 3 HOH A 39 542 542 HOH HOH . C 3 HOH A 40 543 543 HOH HOH . C 3 HOH A 41 544 544 HOH HOH . C 3 HOH A 42 546 546 HOH HOH . C 3 HOH A 43 547 547 HOH HOH . C 3 HOH A 44 548 548 HOH HOH . C 3 HOH A 45 549 549 HOH HOH . C 3 HOH A 46 550 550 HOH HOH . C 3 HOH A 47 551 551 HOH HOH . C 3 HOH A 48 552 552 HOH HOH . C 3 HOH A 49 553 553 HOH HOH . C 3 HOH A 50 554 554 HOH HOH . C 3 HOH A 51 555 555 HOH HOH . C 3 HOH A 52 556 556 HOH HOH . C 3 HOH A 53 557 557 HOH HOH . C 3 HOH A 54 558 558 HOH HOH . C 3 HOH A 55 559 559 HOH HOH . C 3 HOH A 56 560 560 HOH HOH . C 3 HOH A 57 561 561 HOH HOH . C 3 HOH A 58 562 562 HOH HOH . C 3 HOH A 59 563 563 HOH HOH . C 3 HOH A 60 564 564 HOH HOH . C 3 HOH A 61 567 567 HOH HOH . C 3 HOH A 62 568 568 HOH HOH . C 3 HOH A 63 571 571 HOH HOH . C 3 HOH A 64 572 572 HOH HOH . C 3 HOH A 65 573 573 HOH HOH . C 3 HOH A 66 574 574 HOH HOH . C 3 HOH A 67 575 575 HOH HOH . C 3 HOH A 68 576 576 HOH HOH . C 3 HOH A 69 577 577 HOH HOH . C 3 HOH A 70 578 578 HOH HOH . C 3 HOH A 71 579 579 HOH HOH . C 3 HOH A 72 580 580 HOH HOH . C 3 HOH A 73 581 581 HOH HOH . C 3 HOH A 74 582 582 HOH HOH . C 3 HOH A 75 583 583 HOH HOH . C 3 HOH A 76 584 584 HOH HOH . C 3 HOH A 77 585 585 HOH HOH . C 3 HOH A 78 586 586 HOH HOH . C 3 HOH A 79 587 587 HOH HOH . C 3 HOH A 80 588 588 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 3.054 _atom_site.Cartn_y 9.355 _atom_site.Cartn_z 25.104 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 15.51 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 601 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #