data_1XZX # _model_server_result.job_id gVV_mYAjcM-l13E1K9MI9g _model_server_result.datetime_utc '2024-12-21 12:44:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xzx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":500}' # _entry.id 1XZX # _exptl.entry_id 1XZX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 650.973 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3,5,3'TRIIODOTHYRONINE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1XZX _cell.length_a 68.764 _cell.length_b 68.764 _cell.length_c 130.943 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XZX _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA,PQS dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_556 -x,-x+y,-z+4/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 174.590667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 I O HOH . X HOH 37 6_556 F AS CAC . X CAC 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.894 ? metalc ? metalc2 I O HOH . X HOH 54 2_665 D AS CAC . X CAC 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.801 ? metalc ? metalc3 A SG CYS 114 X CYS 294 1_555 B AS CAC . X CAC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc4 A SG CYS 118 X CYS 298 1_555 C AS CAC . X CAC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc5 A SG CYS 208 X CYS 388 1_555 E AS CAC . X CAC 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc6 A SG CYS 254 X CYS 434 1_555 F AS CAC . X CAC 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc7 A SG CYS 254 X CYS 434 1_555 G AS CAC . X CAC 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? # _chem_comp.formula 'C15 H12 I3 N O4' _chem_comp.formula_weight 650.973 _chem_comp.id T3 _chem_comp.mon_nstd_flag . _chem_comp.name "3,5,3'TRIIODOTHYRONINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'T3;THYROID HORMONE;LIOTHYRONINE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C3 T3 doub 300 n y C1 C11 T3 sing 301 n y C1 C13 T3 sing 302 n n C2 C4 T3 doub 303 n y C2 C12 T3 sing 304 n y C2 O2 T3 sing 305 n n C3 C5 T3 sing 306 n y C3 HC3 T3 sing 307 n n C4 C6 T3 sing 308 n y C4 HC4 T3 sing 309 n n C5 C7 T3 doub 310 n y C5 I1 T3 sing 311 n n C6 C8 T3 doub 312 n y C6 I2 T3 sing 313 n n C7 C9 T3 sing 314 n y C7 O2 T3 sing 315 n n C8 C10 T3 sing 316 n y C8 O1 T3 sing 317 n n C9 C11 T3 doub 318 n y C9 I3 T3 sing 319 n n C10 C12 T3 doub 320 n y C10 HC10 T3 sing 321 n n C11 HC11 T3 sing 322 n n C12 HC12 T3 sing 323 n n C13 CA T3 sing 324 n n C13 H131 T3 sing 325 n n C13 H132 T3 sing 326 n n CA C T3 sing 327 n n CA N T3 sing 328 n n CA HA T3 sing 329 n n C OXT T3 sing 330 n n C O T3 doub 331 n n N H2 T3 sing 332 n n N H T3 sing 333 n n O1 HO1 T3 sing 334 n n OXT HXT T3 sing 335 n n # _atom_sites.entry_id 1XZX _atom_sites.fract_transf_matrix[1][1] 0.0145 _atom_sites.fract_transf_matrix[1][2] 0.0084 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0168 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0076 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CAC X 1 501 501 CAC CAC . C 2 CAC X 1 502 502 CAC CAC . D 2 CAC X 1 503 503 CAC CAC . E 2 CAC X 1 504 504 CAC CAC . F 2 CAC X 1 505 505 CAC CAC . G 2 CAC X 1 506 506 CAC CAC . H 3 T3 X 1 500 500 T3 T3 . I 4 HOH X 1 1 1 HOH HOH . I 4 HOH X 2 2 2 HOH HOH . I 4 HOH X 3 3 3 HOH HOH . I 4 HOH X 4 4 4 HOH HOH . I 4 HOH X 5 5 5 HOH HOH . I 4 HOH X 6 6 6 HOH HOH . I 4 HOH X 7 7 7 HOH HOH . I 4 HOH X 8 8 8 HOH HOH . I 4 HOH X 9 9 9 HOH HOH . I 4 HOH X 10 10 10 HOH HOH . I 4 HOH X 11 11 11 HOH HOH . I 4 HOH X 12 12 12 HOH HOH . I 4 HOH X 13 13 13 HOH HOH . I 4 HOH X 14 14 14 HOH HOH . I 4 HOH X 15 15 15 HOH HOH . I 4 HOH X 16 16 16 HOH HOH . I 4 HOH X 17 17 17 HOH HOH . I 4 HOH X 18 18 18 HOH HOH . I 4 HOH X 19 19 19 HOH HOH . I 4 HOH X 20 20 20 HOH HOH . I 4 HOH X 21 21 21 HOH HOH . I 4 HOH X 22 22 22 HOH HOH . I 4 HOH X 23 23 23 HOH HOH . I 4 HOH X 24 24 24 HOH HOH . I 4 HOH X 25 25 25 HOH HOH . I 4 HOH X 26 26 26 HOH HOH . I 4 HOH X 27 27 27 HOH HOH . I 4 HOH X 28 28 28 HOH HOH . I 4 HOH X 29 29 29 HOH HOH . I 4 HOH X 30 30 30 HOH HOH . I 4 HOH X 31 31 31 HOH HOH . I 4 HOH X 32 32 32 HOH HOH . I 4 HOH X 33 33 33 HOH HOH . I 4 HOH X 34 34 34 HOH HOH . I 4 HOH X 35 35 35 HOH HOH . I 4 HOH X 36 36 36 HOH HOH . I 4 HOH X 37 37 37 HOH HOH . I 4 HOH X 38 38 38 HOH HOH . I 4 HOH X 39 39 39 HOH HOH . I 4 HOH X 40 40 40 HOH HOH . I 4 HOH X 41 41 41 HOH HOH . I 4 HOH X 42 43 43 HOH HOH . I 4 HOH X 43 46 46 HOH HOH . I 4 HOH X 44 47 47 HOH HOH . I 4 HOH X 45 48 48 HOH HOH . I 4 HOH X 46 49 49 HOH HOH . I 4 HOH X 47 50 50 HOH HOH . I 4 HOH X 48 51 51 HOH HOH . I 4 HOH X 49 52 52 HOH HOH . I 4 HOH X 50 53 53 HOH HOH . I 4 HOH X 51 54 54 HOH HOH . I 4 HOH X 52 55 55 HOH HOH . I 4 HOH X 53 56 56 HOH HOH . I 4 HOH X 54 57 57 HOH HOH . I 4 HOH X 55 58 58 HOH HOH . I 4 HOH X 56 59 59 HOH HOH . I 4 HOH X 57 60 60 HOH HOH . I 4 HOH X 58 61 61 HOH HOH . I 4 HOH X 59 62 62 HOH HOH . I 4 HOH X 60 63 63 HOH HOH . I 4 HOH X 61 64 64 HOH HOH . I 4 HOH X 62 65 65 HOH HOH . I 4 HOH X 63 66 66 HOH HOH . I 4 HOH X 64 67 67 HOH HOH . I 4 HOH X 65 68 68 HOH HOH . I 4 HOH X 66 69 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 T3 . . . H 3 6.73 20.849 92.931 1 47.54 ? C1 T3 500 X 1 HETATM 2 C C2 T3 . . . H 3 3.473 18.218 95.517 1 41.66 ? C2 T3 500 X 1 HETATM 3 C C3 T3 . . . H 3 6.961 20.553 94.278 1 47.35 ? C3 T3 500 X 1 HETATM 4 C C4 T3 . . . H 3 3.18 17.362 96.519 1 37.81 ? C4 T3 500 X 1 HETATM 5 C C5 T3 . . . H 3 6.256 19.577 94.9 1 51.21 ? C5 T3 500 X 1 HETATM 6 C C6 T3 . . . H 3 2.015 17.548 97.27 1 49.58 ? C6 T3 500 X 1 HETATM 7 C C7 T3 . . . H 3 5.222 18.915 94.136 1 41 ? C7 T3 500 X 1 HETATM 8 C C8 T3 . . . H 3 1.146 18.672 97.082 1 37.7 ? C8 T3 500 X 1 HETATM 9 C C9 T3 . . . H 3 4.925 19.26 92.767 1 49.55 ? C9 T3 500 X 1 HETATM 10 C C10 T3 . . . H 3 1.512 19.543 96.129 1 42.16 ? C10 T3 500 X 1 HETATM 11 C C11 T3 . . . H 3 5.731 20.243 92.217 1 48.21 ? C11 T3 500 X 1 HETATM 12 C C12 T3 . . . H 3 2.657 19.327 95.346 1 44.01 ? C12 T3 500 X 1 HETATM 13 C C13 T3 . . . H 3 7.558 21.976 92.301 1 42.63 ? C13 T3 500 X 1 HETATM 14 C CA T3 . . . H 3 8.225 21.656 91.001 1 39.2 ? CA T3 500 X 1 HETATM 15 C C T3 . . . H 3 9.203 22.76 90.715 1 40.84 ? C T3 500 X 1 HETATM 16 I I1 T3 . . . H 3 6.679 18.908 96.898 1 49.6 ? I1 T3 500 X 1 HETATM 17 I I2 T3 . . . H 3 1.437 16.231 98.851 1 52.42 ? I2 T3 500 X 1 HETATM 18 I I3 T3 . . . H 3 3.513 18.142 91.644 1 51.71 ? I3 T3 500 X 1 HETATM 19 N N T3 . . . H 3 8.762 20.32 90.967 1 37.01 ? N T3 500 X 1 HETATM 20 O O1 T3 . . . H 3 0.096 18.799 97.855 1 38.36 ? O1 T3 500 X 1 HETATM 21 O O2 T3 . . . H 3 4.578 17.942 94.711 1 36.12 ? O2 T3 500 X 1 HETATM 22 O OXT T3 . . . H 3 10.292 22.452 90.049 1 40.88 ? OXT T3 500 X 1 HETATM 23 O O T3 . . . H 3 8.988 23.96 91.02 1 42.8 ? O T3 500 X 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #