data_1Y01 # _model_server_result.job_id AiFdNips0bwRJbTm3iVpzA _model_server_result.datetime_utc '2024-11-29 02:23:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1y01 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":144}' # _entry.id 1Y01 # _exptl.entry_id 1Y01 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 349.42 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-[(CYCLOHEXYLACETYL)(2-HYDROXYETHYL)AMINO]-6-DEOXY-D-XYLO-HEXITOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1Y01 _cell.length_a 69.63 _cell.length_b 69.63 _cell.length_c 140.466 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Y01 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B NE2 HIS 59 B HIS 58 1_555 C FE HEM . B HEM 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc2 C FE HEM . B HEM 142 1_555 D O1 OXY . B OXY 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? # _chem_comp.formula 'C16 H31 N O7' _chem_comp.formula_weight 349.42 _chem_comp.id CHK _chem_comp.mon_nstd_flag . _chem_comp.name 6-[(CYCLOHEXYLACETYL)(2-HYDROXYETHYL)AMINO]-6-DEOXY-D-XYLO-HEXITOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms C-HEGA-8;CYCLOHEXYLETHANOYL-N-HYDROXYETHYLGLUCOAMIDE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OX1 CX1 CHK doub 70 n n CX1 CX2 CHK sing 71 n n CX1 NX1 CHK sing 72 n n CX2 CX3 CHK sing 73 n n CX2 HX21 CHK sing 74 n n CX2 HX22 CHK sing 75 n n CX3 CX4 CHK sing 76 n n CX3 CX8 CHK sing 77 n n CX3 H1 CHK sing 78 n n CX4 CX5 CHK sing 79 n n CX4 HX41 CHK sing 80 n n CX4 HX42 CHK sing 81 n n CX5 CX6 CHK sing 82 n n CX5 HX51 CHK sing 83 n n CX5 HX52 CHK sing 84 n n CX6 CX7 CHK sing 85 n n CX6 HX61 CHK sing 86 n n CX6 HX62 CHK sing 87 n n CX7 CX8 CHK sing 88 n n CX7 HX71 CHK sing 89 n n CX7 HX72 CHK sing 90 n n CX8 HX81 CHK sing 91 n n CX8 HX82 CHK sing 92 n n NX1 CX9 CHK sing 93 n n NX1 CXB CHK sing 94 n n CX9 CXA CHK sing 95 n n CX9 HX91 CHK sing 96 n n CX9 HX92 CHK sing 97 n n CXA OX2 CHK sing 98 n n CXA HXA1 CHK sing 99 n n CXA HXA2 CHK sing 100 n n OX2 HX2 CHK sing 101 n n CXB CXC CHK sing 102 n n CXB HXB1 CHK sing 103 n n CXB HXB2 CHK sing 104 n n CXC OX3 CHK sing 105 n n CXC CXD CHK sing 106 n n CXC HXC CHK sing 107 n n OX3 HX3 CHK sing 108 n n CXD OX4 CHK sing 109 n n CXD CXE CHK sing 110 n n CXD HXD CHK sing 111 n n OX4 HX4 CHK sing 112 n n CXE OX5 CHK sing 113 n n CXE CXF CHK sing 114 n n CXE HXE CHK sing 115 n n OX5 HX5 CHK sing 116 n n CXF OX6 CHK sing 117 n n CXF CXG CHK sing 118 n n CXF HXF CHK sing 119 n n OX6 HX6 CHK sing 120 n n CXG OX7 CHK sing 121 n n CXG HXG1 CHK sing 122 n n CXG HXG2 CHK sing 123 n n OX7 HX7 CHK sing 124 n n # _atom_sites.entry_id 1Y01 _atom_sites.fract_transf_matrix[1][1] 0.014362 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014362 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007119 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HEM B 1 142 142 HEM HEM . D 4 OXY B 1 143 1 OXY O2 . E 5 CHK B 1 144 1 CHK CHE . F 6 HOH A 1 103 4 HOH TIP . F 6 HOH A 2 104 5 HOH TIP . F 6 HOH A 3 105 6 HOH TIP . F 6 HOH A 4 106 11 HOH TIP . F 6 HOH A 5 107 13 HOH TIP . F 6 HOH A 6 108 15 HOH TIP . F 6 HOH A 7 109 17 HOH TIP . F 6 HOH A 8 110 18 HOH TIP . F 6 HOH A 9 111 19 HOH TIP . F 6 HOH A 10 112 20 HOH TIP . F 6 HOH A 11 113 21 HOH TIP . F 6 HOH A 12 114 22 HOH TIP . F 6 HOH A 13 115 26 HOH TIP . F 6 HOH A 14 116 34 HOH TIP . F 6 HOH A 15 117 35 HOH TIP . F 6 HOH A 16 118 38 HOH TIP . F 6 HOH A 17 119 39 HOH TIP . G 6 HOH B 1 145 1 HOH TIP . G 6 HOH B 2 146 2 HOH TIP . G 6 HOH B 3 147 3 HOH TIP . G 6 HOH B 4 148 7 HOH TIP . G 6 HOH B 5 149 8 HOH TIP . G 6 HOH B 6 150 9 HOH TIP . G 6 HOH B 7 151 10 HOH TIP . G 6 HOH B 8 152 12 HOH TIP . G 6 HOH B 9 153 14 HOH TIP . G 6 HOH B 10 154 16 HOH TIP . G 6 HOH B 11 155 23 HOH TIP . G 6 HOH B 12 156 24 HOH TIP . G 6 HOH B 13 157 25 HOH TIP . G 6 HOH B 14 158 27 HOH TIP . G 6 HOH B 15 159 28 HOH TIP . G 6 HOH B 16 160 29 HOH TIP . G 6 HOH B 17 161 30 HOH TIP . G 6 HOH B 18 162 31 HOH TIP . G 6 HOH B 19 163 32 HOH TIP . G 6 HOH B 20 164 33 HOH TIP . G 6 HOH B 21 165 36 HOH TIP . G 6 HOH B 22 166 37 HOH TIP . G 6 HOH B 23 167 40 HOH TIP . G 6 HOH B 24 168 41 HOH TIP . G 6 HOH B 25 169 42 HOH TIP . G 6 HOH B 26 170 43 HOH TIP . G 6 HOH B 27 171 44 HOH TIP . G 6 HOH B 28 172 45 HOH TIP . G 6 HOH B 29 173 46 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OX1 CHK . . . E 5 26.167 16.797 14.223 1 107.42 ? OX1 CHK 144 B 1 HETATM 2 C CX1 CHK . . . E 5 26.711 16.83 13.179 1 103.45 ? CX1 CHK 144 B 1 HETATM 3 C CX2 CHK . . . E 5 26.004 16.282 11.937 1 96.63 ? CX2 CHK 144 B 1 HETATM 4 C CX3 CHK . . . E 5 24.527 15.866 12.175 1 91.01 ? CX3 CHK 144 B 1 HETATM 5 C CX4 CHK . . . E 5 24.041 15.083 10.935 1 89.88 ? CX4 CHK 144 B 1 HETATM 6 C CX5 CHK . . . E 5 22.563 14.606 11.031 1 90.81 ? CX5 CHK 144 B 1 HETATM 7 C CX6 CHK . . . E 5 22.205 14.025 12.419 1 88.45 ? CX6 CHK 144 B 1 HETATM 8 C CX7 CHK . . . E 5 22.6 14.947 13.555 1 88.75 ? CX7 CHK 144 B 1 HETATM 9 C CX8 CHK . . . E 5 24.151 15.136 13.532 1 89.88 ? CX8 CHK 144 B 1 HETATM 10 N NX1 CHK . . . E 5 27.946 17.372 13.132 1 108.51 ? NX1 CHK 144 B 1 HETATM 11 C CX9 CHK . . . E 5 28.647 17.921 14.356 1 113.62 ? CX9 CHK 144 B 1 HETATM 12 C CXA CHK . . . E 5 29.961 18.765 14.011 1 119.22 ? CXA CHK 144 B 1 HETATM 13 O OX2 CHK . . . E 5 29.743 20.19 14.159 1 124.61 ? OX2 CHK 144 B 1 HETATM 14 C CXB CHK . . . E 5 28.618 17.6 11.909 1 112.2 ? CXB CHK 144 B 1 HETATM 15 C CXC CHK . . . E 5 29.887 17.11 11.298 1 114.9 ? CXC CHK 144 B 1 HETATM 16 O OX3 CHK . . . E 5 29.777 15.781 10.876 1 116.02 ? OX3 CHK 144 B 1 HETATM 17 C CXD CHK . . . E 5 29.811 18.181 10.239 1 115.64 ? CXD CHK 144 B 1 HETATM 18 O OX4 CHK . . . E 5 29.877 19.441 10.943 1 118.57 ? OX4 CHK 144 B 1 HETATM 19 C CXE CHK . . . E 5 30.877 18.46 9.222 1 116.17 ? CXE CHK 144 B 1 HETATM 20 O OX5 CHK . . . E 5 31.239 17.38 8.372 1 115.63 ? OX5 CHK 144 B 1 HETATM 21 C CXF CHK . . . E 5 30.21 19.681 8.402 1 115.43 ? CXF CHK 144 B 1 HETATM 22 O OX6 CHK . . . E 5 29.706 20.838 9.136 1 114.09 ? OX6 CHK 144 B 1 HETATM 23 C CXG CHK . . . E 5 31.072 20.266 7.317 1 113.27 ? CXG CHK 144 B 1 HETATM 24 O OX7 CHK . . . E 5 30.302 21.351 6.763 1 115.55 ? OX7 CHK 144 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 24 #