data_1Y0S
#
_model_server_result.job_id            wXomoKJqgNq3hsVXAi7jAA 
_model_server_result.datetime_utc      '2024-12-21 17:18:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1y0s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":480}' 
#
_entry.id    1Y0S 
#
_exptl.entry_id    1Y0S 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              278.342 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'heptyl beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.92 
_cell.angle_gamma         90 
_cell.entry_id            1Y0S 
_cell.length_a            39.356 
_cell.length_b            94.523 
_cell.length_c            96.492 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1Y0S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,R 1 1 
B,L,M,N,O,P,Q,S 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 K N N 
? 4 Q N N 
#
_chem_comp.formula           'C13 H26 O6' 
_chem_comp.formula_weight    278.342 
_chem_comp.id                B7G 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'heptyl beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'HEPTYL-BETA-D-GLUCOPYRANOSIDE;heptyl beta-D-glucoside;heptyl D-glucoside;heptyl glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C5 O5 B7G sing 142 n n 
C5 C4 B7G sing 143 n n 
C5 C6 B7G sing 144 n n 
C5 H5 B7G sing 145 n n 
O5 C1 B7G sing 146 n n 
C1 C2 B7G sing 147 n n 
C1 O1 B7G sing 148 n n 
C1 H1 B7G sing 149 n n 
C2 C3 B7G sing 150 n n 
C2 O2 B7G sing 151 n n 
C2 H2 B7G sing 152 n n 
C3 C4 B7G sing 153 n n 
C3 O3 B7G sing 154 n n 
C3 H3 B7G sing 155 n n 
C4 O4 B7G sing 156 n n 
C4 H4 B7G sing 157 n n 
C6 O6 B7G sing 158 n n 
C6 H61 B7G sing 159 n n 
C6 H62 B7G sing 160 n n 
O1 C7 B7G sing 161 n n 
C7 C8 B7G sing 162 n n 
C7 H71 B7G sing 163 n n 
C7 H72 B7G sing 164 n n 
C8 C9 B7G sing 165 n n 
C8 H81 B7G sing 166 n n 
C8 H82 B7G sing 167 n n 
C9 C10 B7G sing 168 n n 
C9 H91 B7G sing 169 n n 
C9 H92 B7G sing 170 n n 
C10 C11 B7G sing 171 n n 
C10 H101 B7G sing 172 n n 
C10 H102 B7G sing 173 n n 
C11 C12 B7G sing 174 n n 
C11 H111 B7G sing 175 n n 
C11 H112 B7G sing 176 n n 
C12 C13 B7G sing 177 n n 
C12 H121 B7G sing 178 n n 
C12 H122 B7G sing 179 n n 
O2 HO2 B7G sing 180 n n 
O3 HO3 B7G sing 181 n n 
O4 HO4 B7G sing 182 n n 
O6 HO6 B7G sing 183 n n 
C13 H131 B7G sing 184 n n 
C13 H132 B7G sing 185 n n 
C13 H133 B7G sing 186 n n 
#
_pdbx_chem_comp_identifier.comp_id            B7G 
_pdbx_chem_comp_identifier.identifier         heptyl-b-D-Glucopyranoside 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     1Y0S 
_atom_sites.fract_transf_matrix[1][1]    0.025409 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003535 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010579 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010463 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 IOD A 1 200 200 IOD IOD . 
D 2 IOD A 1 202 202 IOD IOD . 
E 2 IOD A 1 203 203 IOD IOD . 
F 2 IOD A 1 478 206 IOD IOD . 
G 2 IOD A 1 479 207 IOD IOD . 
H 2 IOD A 1 480 208 IOD IOD . 
I 2 IOD A 1 481 209 IOD IOD . 
J 3 331 A 1 482 300 331 331 . 
K 4 B7G A 1 483 400 B7G B7G . 
L 2 IOD B 1 201 201 IOD IOD . 
M 2 IOD B 1 204 204 IOD IOD . 
N 2 IOD B 1 205 205 IOD IOD . 
O 2 IOD B 1 478 210 IOD IOD . 
P 3 331 B 1 479 301 331 331 . 
Q 4 B7G B 1 480 401 B7G B7G . 
R 5 HOH A 1 1 1 HOH HOH . 
R 5 HOH A 2 2 2 HOH HOH . 
R 5 HOH A 3 3 3 HOH HOH . 
R 5 HOH A 4 4 4 HOH HOH . 
R 5 HOH A 5 6 6 HOH HOH . 
R 5 HOH A 6 7 7 HOH HOH . 
R 5 HOH A 7 10 10 HOH HOH . 
R 5 HOH A 8 12 12 HOH HOH . 
R 5 HOH A 9 14 14 HOH HOH . 
R 5 HOH A 10 15 15 HOH HOH . 
R 5 HOH A 11 19 19 HOH HOH . 
R 5 HOH A 12 22 22 HOH HOH . 
R 5 HOH A 13 26 26 HOH HOH . 
R 5 HOH A 14 27 27 HOH HOH . 
R 5 HOH A 15 30 30 HOH HOH . 
R 5 HOH A 16 31 31 HOH HOH . 
R 5 HOH A 17 33 33 HOH HOH . 
R 5 HOH A 18 34 34 HOH HOH . 
R 5 HOH A 19 37 37 HOH HOH . 
R 5 HOH A 20 38 38 HOH HOH . 
R 5 HOH A 21 40 40 HOH HOH . 
R 5 HOH A 22 41 41 HOH HOH . 
R 5 HOH A 23 42 42 HOH HOH . 
R 5 HOH A 24 43 43 HOH HOH . 
R 5 HOH A 25 51 51 HOH HOH . 
R 5 HOH A 26 53 53 HOH HOH . 
R 5 HOH A 27 54 54 HOH HOH . 
R 5 HOH A 28 59 59 HOH HOH . 
R 5 HOH A 29 60 60 HOH HOH . 
R 5 HOH A 30 62 62 HOH HOH . 
R 5 HOH A 31 63 63 HOH HOH . 
R 5 HOH A 32 65 65 HOH HOH . 
R 5 HOH A 33 66 66 HOH HOH . 
R 5 HOH A 34 67 67 HOH HOH . 
R 5 HOH A 35 68 68 HOH HOH . 
R 5 HOH A 36 69 69 HOH HOH . 
R 5 HOH A 37 70 70 HOH HOH . 
R 5 HOH A 38 71 71 HOH HOH . 
R 5 HOH A 39 76 76 HOH HOH . 
R 5 HOH A 40 77 77 HOH HOH . 
R 5 HOH A 41 78 78 HOH HOH . 
R 5 HOH A 42 80 80 HOH HOH . 
R 5 HOH A 43 81 81 HOH HOH . 
R 5 HOH A 44 83 83 HOH HOH . 
R 5 HOH A 45 85 85 HOH HOH . 
R 5 HOH A 46 88 88 HOH HOH . 
R 5 HOH A 47 89 89 HOH HOH . 
R 5 HOH A 48 91 91 HOH HOH . 
R 5 HOH A 49 92 92 HOH HOH . 
R 5 HOH A 50 93 93 HOH HOH . 
R 5 HOH A 51 96 96 HOH HOH . 
R 5 HOH A 52 101 101 HOH HOH . 
R 5 HOH A 53 104 104 HOH HOH . 
R 5 HOH A 54 106 106 HOH HOH . 
R 5 HOH A 55 107 107 HOH HOH . 
R 5 HOH A 56 109 109 HOH HOH . 
R 5 HOH A 57 112 112 HOH HOH . 
R 5 HOH A 58 113 113 HOH HOH . 
R 5 HOH A 59 115 115 HOH HOH . 
R 5 HOH A 60 119 119 HOH HOH . 
R 5 HOH A 61 120 120 HOH HOH . 
R 5 HOH A 62 122 122 HOH HOH . 
R 5 HOH A 63 123 123 HOH HOH . 
R 5 HOH A 64 124 124 HOH HOH . 
R 5 HOH A 65 125 125 HOH HOH . 
R 5 HOH A 66 126 126 HOH HOH . 
R 5 HOH A 67 127 127 HOH HOH . 
R 5 HOH A 68 128 128 HOH HOH . 
R 5 HOH A 69 131 131 HOH HOH . 
R 5 HOH A 70 134 134 HOH HOH . 
R 5 HOH A 71 135 135 HOH HOH . 
R 5 HOH A 72 136 136 HOH HOH . 
R 5 HOH A 73 137 137 HOH HOH . 
R 5 HOH A 74 139 139 HOH HOH . 
R 5 HOH A 75 143 143 HOH HOH . 
R 5 HOH A 76 144 144 HOH HOH . 
R 5 HOH A 77 145 145 HOH HOH . 
R 5 HOH A 78 148 148 HOH HOH . 
R 5 HOH A 79 149 149 HOH HOH . 
R 5 HOH A 80 153 153 HOH HOH . 
R 5 HOH A 81 155 155 HOH HOH . 
R 5 HOH A 82 156 156 HOH HOH . 
R 5 HOH A 83 157 157 HOH HOH . 
R 5 HOH A 84 161 161 HOH HOH . 
S 5 HOH B 1 5 5 HOH HOH . 
S 5 HOH B 2 8 8 HOH HOH . 
S 5 HOH B 3 9 9 HOH HOH . 
S 5 HOH B 4 11 11 HOH HOH . 
S 5 HOH B 5 13 13 HOH HOH . 
S 5 HOH B 6 16 16 HOH HOH . 
S 5 HOH B 7 17 17 HOH HOH . 
S 5 HOH B 8 18 18 HOH HOH . 
S 5 HOH B 9 20 20 HOH HOH . 
S 5 HOH B 10 21 21 HOH HOH . 
S 5 HOH B 11 23 23 HOH HOH . 
S 5 HOH B 12 24 24 HOH HOH . 
S 5 HOH B 13 25 25 HOH HOH . 
S 5 HOH B 14 28 28 HOH HOH . 
S 5 HOH B 15 29 29 HOH HOH . 
S 5 HOH B 16 32 32 HOH HOH . 
S 5 HOH B 17 35 35 HOH HOH . 
S 5 HOH B 18 36 36 HOH HOH . 
S 5 HOH B 19 39 39 HOH HOH . 
S 5 HOH B 20 44 44 HOH HOH . 
S 5 HOH B 21 45 45 HOH HOH . 
S 5 HOH B 22 46 46 HOH HOH . 
S 5 HOH B 23 47 47 HOH HOH . 
S 5 HOH B 24 48 48 HOH HOH . 
S 5 HOH B 25 49 49 HOH HOH . 
S 5 HOH B 26 50 50 HOH HOH . 
S 5 HOH B 27 52 52 HOH HOH . 
S 5 HOH B 28 55 55 HOH HOH . 
S 5 HOH B 29 56 56 HOH HOH . 
S 5 HOH B 30 57 57 HOH HOH . 
S 5 HOH B 31 58 58 HOH HOH . 
S 5 HOH B 32 61 61 HOH HOH . 
S 5 HOH B 33 64 64 HOH HOH . 
S 5 HOH B 34 72 72 HOH HOH . 
S 5 HOH B 35 73 73 HOH HOH . 
S 5 HOH B 36 74 74 HOH HOH . 
S 5 HOH B 37 75 75 HOH HOH . 
S 5 HOH B 38 79 79 HOH HOH . 
S 5 HOH B 39 82 82 HOH HOH . 
S 5 HOH B 40 84 84 HOH HOH . 
S 5 HOH B 41 86 86 HOH HOH . 
S 5 HOH B 42 87 87 HOH HOH . 
S 5 HOH B 43 90 90 HOH HOH . 
S 5 HOH B 44 94 94 HOH HOH . 
S 5 HOH B 45 95 95 HOH HOH . 
S 5 HOH B 46 97 97 HOH HOH . 
S 5 HOH B 47 98 98 HOH HOH . 
S 5 HOH B 48 99 99 HOH HOH . 
S 5 HOH B 49 100 100 HOH HOH . 
S 5 HOH B 50 102 102 HOH HOH . 
S 5 HOH B 51 103 103 HOH HOH . 
S 5 HOH B 52 105 105 HOH HOH . 
S 5 HOH B 53 108 108 HOH HOH . 
S 5 HOH B 54 110 110 HOH HOH . 
S 5 HOH B 55 111 111 HOH HOH . 
S 5 HOH B 56 114 114 HOH HOH . 
S 5 HOH B 57 116 116 HOH HOH . 
S 5 HOH B 58 117 117 HOH HOH . 
S 5 HOH B 59 118 118 HOH HOH . 
S 5 HOH B 60 121 121 HOH HOH . 
S 5 HOH B 61 129 129 HOH HOH . 
S 5 HOH B 62 130 130 HOH HOH . 
S 5 HOH B 63 132 132 HOH HOH . 
S 5 HOH B 64 133 133 HOH HOH . 
S 5 HOH B 65 138 138 HOH HOH . 
S 5 HOH B 66 140 140 HOH HOH . 
S 5 HOH B 67 141 141 HOH HOH . 
S 5 HOH B 68 142 142 HOH HOH . 
S 5 HOH B 69 146 146 HOH HOH . 
S 5 HOH B 70 147 147 HOH HOH . 
S 5 HOH B 71 150 150 HOH HOH . 
S 5 HOH B 72 151 151 HOH HOH . 
S 5 HOH B 73 152 152 HOH HOH . 
S 5 HOH B 74 154 154 HOH HOH . 
S 5 HOH B 75 158 158 HOH HOH . 
S 5 HOH B 76 159 159 HOH HOH . 
S 5 HOH B 77 160 160 HOH HOH . 
S 5 HOH B 78 162 162 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C5 B7G . . . Q 4 -8.509 -19.431 21.275 1 62.58 ? C5 B7G 480 B 1 
HETATM 2 O O5 B7G . . . Q 4 -8.065 -18.526 20.24 1 62.74 ? O5 B7G 480 B 1 
HETATM 3 C C1 B7G . . . Q 4 -8.664 -17.215 20.296 1 60.68 ? C1 B7G 480 B 1 
HETATM 4 C C2 B7G . . . Q 4 -10.149 -17.356 20.002 1 62.13 ? C2 B7G 480 B 1 
HETATM 5 C C3 B7G . . . Q 4 -10.874 -18.651 20.391 1 62.81 ? C3 B7G 480 B 1 
HETATM 6 C C4 B7G . . . Q 4 -10.044 -19.592 21.29 1 62.76 ? C4 B7G 480 B 1 
HETATM 7 C C6 B7G . . . Q 4 -7.844 -20.796 21.07 1 62.33 ? C6 B7G 480 B 1 
HETATM 8 O O1 B7G . . . Q 4 -8.218 -16.298 19.28 1 58.03 ? O1 B7G 480 B 1 
HETATM 9 C C7 B7G . . . Q 4 -6.806 -16.129 19.084 1 53.63 ? C7 B7G 480 B 1 
HETATM 10 C C8 B7G . . . Q 4 -6.236 -14.826 19.663 1 48.6 ? C8 B7G 480 B 1 
HETATM 11 C C9 B7G . . . Q 4 -4.745 -14.689 19.346 1 44.73 ? C9 B7G 480 B 1 
HETATM 12 C C10 B7G . . . Q 4 -4.07 -13.601 20.192 1 39.8 ? C10 B7G 480 B 1 
HETATM 13 C C11 B7G . . . Q 4 -2.608 -13.5 19.845 1 35.53 ? C11 B7G 480 B 1 
HETATM 14 C C12 B7G . . . Q 4 -1.886 -14.786 20.145 1 35.36 ? C12 B7G 480 B 1 
HETATM 15 O O2 B7G . . . Q 4 -10.765 -16.441 19.46 1 63.99 ? O2 B7G 480 B 1 
HETATM 16 O O3 B7G . . . Q 4 -12.026 -18.9 20.018 1 60.76 ? O3 B7G 480 B 1 
HETATM 17 O O4 B7G . . . Q 4 -10.582 -20.437 22.009 1 61.77 ? O4 B7G 480 B 1 
HETATM 18 O O6 B7G . . . Q 4 -6.545 -20.698 21.156 1 61.8 ? O6 B7G 480 B 1 
HETATM 19 C C13 B7G . . . Q 4 -0.478 -14.852 19.519 1 36.91 ? C13 B7G 480 B 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           19 
#