data_1Y0X # _model_server_result.job_id SrCEPePq0skPaIKlCZdeXw _model_server_result.datetime_utc '2025-02-05 07:47:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1y0x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":500}' # _entry.id 1Y0X # _exptl.entry_id 1Y0X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 776.87 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3,5,3',5'-TETRAIODO-L-THYRONINE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1Y0X _cell.length_a 68.79 _cell.length_b 68.79 _cell.length_c 130.4 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Y0X _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA,PQS dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_766 -x+2,-x+y+1,-z+4/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 103.185 59.573888 173.866667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 114 X CYS 294 1_555 B AS CAC . X CAC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? metalc ? metalc2 A SG CYS 118 X CYS 298 1_555 C AS CAC . X CAC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.628 ? metalc ? metalc3 A SG CYS 208 X CYS 388 1_555 E AS CAC . X CAC 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.73 ? metalc ? metalc4 A NH2 ARG 211 X ARG 391 1_555 E AS CAC . X CAC 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.776 ? metalc ? metalc5 A SG CYS 254 X CYS 434 1_555 F AS CAC . X CAC 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc6 A SG CYS 254 X CYS 434 6_766 G AS CAC . X CAC 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.834 ? # _chem_comp.formula 'C15 H11 I4 N O4' _chem_comp.formula_weight 776.87 _chem_comp.id T44 _chem_comp.mon_nstd_flag . _chem_comp.name "3,5,3',5'-TETRAIODO-L-THYRONINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 T44 doub 300 n y C1 C6 T44 sing 301 n y C1 C7 T44 sing 302 n n C2 C3 T44 sing 303 n y C2 H1 T44 sing 304 n n C3 C4 T44 doub 305 n y C3 I3 T44 sing 306 n n C4 C5 T44 sing 307 n y C4 O4 T44 sing 308 n n C5 C6 T44 doub 309 n y C5 I5 T44 sing 310 n n C6 H6 T44 sing 311 n n C7 CA T44 sing 312 n n C7 H71 T44 sing 313 n n C7 H72 T44 sing 314 n n CA C T44 sing 315 n n CA N T44 sing 316 n n CA HA T44 sing 317 n n C O T44 doub 318 n n C OXT T44 sing 319 n n C1' C2' T44 doub 320 n y C1' C6' T44 sing 321 n y C1' O4 T44 sing 322 n n C2' C3' T44 sing 323 n y C2' H2' T44 sing 324 n n C3' C4' T44 doub 325 n y C3' I3' T44 sing 326 n n C4' C5' T44 sing 327 n y C4' O4' T44 sing 328 n n C5' C6' T44 doub 329 n y C5' I5' T44 sing 330 n n C6' H6' T44 sing 331 n n N H T44 sing 332 n n N H2 T44 sing 333 n n O4' HO4' T44 sing 334 n n OXT HXT T44 sing 335 n n # _atom_sites.entry_id 1Y0X _atom_sites.fract_transf_matrix[1][1] 0.0145 _atom_sites.fract_transf_matrix[1][2] 0.0084 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0168 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0077 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CAC X 1 501 501 CAC CAC . C 2 CAC X 1 502 502 CAC CAC . D 2 CAC X 1 503 503 CAC CAC . E 2 CAC X 1 504 504 CAC CAC . F 2 CAC X 1 505 505 CAC CAC . G 2 CAC X 1 506 506 CAC CAC . H 3 T44 X 1 500 500 T44 T44 . I 4 HOH X 1 1 1 HOH HOH . I 4 HOH X 2 2 2 HOH HOH . I 4 HOH X 3 3 3 HOH HOH . I 4 HOH X 4 4 4 HOH HOH . I 4 HOH X 5 5 5 HOH HOH . I 4 HOH X 6 6 6 HOH HOH . I 4 HOH X 7 7 7 HOH HOH . I 4 HOH X 8 8 8 HOH HOH . I 4 HOH X 9 9 9 HOH HOH . I 4 HOH X 10 10 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 T44 . . . H 3 27.714 38.695 92.687 1 50.33 ? C1 T44 500 X 1 HETATM 2 C C2 T44 . . . H 3 28.75 39.301 91.984 1 51.85 ? C2 T44 500 X 1 HETATM 3 C C3 T44 . . . H 3 29.562 40.288 92.53 1 51.06 ? C3 T44 500 X 1 HETATM 4 C C4 T44 . . . H 3 29.288 40.745 93.878 1 52.76 ? C4 T44 500 X 1 HETATM 5 C C5 T44 . . . H 3 28.204 40.094 94.635 1 54.94 ? C5 T44 500 X 1 HETATM 6 C C6 T44 . . . H 3 27.494 39.085 94.011 1 54.28 ? C6 T44 500 X 1 HETATM 7 C C7 T44 . . . H 3 26.831 37.558 92.112 1 46.44 ? C7 T44 500 X 1 HETATM 8 C CA T44 . . . H 3 26.169 37.734 90.723 1 42.09 ? CA T44 500 X 1 HETATM 9 C C T44 . . . H 3 25.159 36.651 90.488 1 39.01 ? C T44 500 X 1 HETATM 10 C C1' T44 . . . H 3 31.061 41.296 95.234 1 53.07 ? C1' T44 500 X 1 HETATM 11 C C2' T44 . . . H 3 31.483 42.213 96.132 1 54.93 ? C2' T44 500 X 1 HETATM 12 C C3' T44 . . . H 3 32.513 41.948 97.004 1 53.94 ? C3' T44 500 X 1 HETATM 13 C C4' T44 . . . H 3 33.222 40.734 97.079 1 51.04 ? C4' T44 500 X 1 HETATM 14 C C5' T44 . . . H 3 32.739 39.75 96.111 1 54.04 ? C5' T44 500 X 1 HETATM 15 C C6' T44 . . . H 3 31.684 40.056 95.231 1 54.91 ? C6' T44 500 X 1 HETATM 16 N N T44 . . . H 3 25.575 39.035 90.471 1 37.07 ? N T44 500 X 1 HETATM 17 O O4 T44 . . . H 3 30.046 41.712 94.422 1 51.56 ? O4 T44 500 X 1 HETATM 18 O O4' T44 . . . H 3 34.134 40.758 98.032 1 45.87 ? O4' T44 500 X 1 HETATM 19 O O T44 . . . H 3 25.384 35.432 90.789 1 37.46 ? O T44 500 X 1 HETATM 20 O OXT T44 . . . H 3 24.144 37.03 89.877 1 40.6 ? OXT T44 500 X 1 HETATM 21 I I3 T44 . . . H 3 31.005 41.266 91.4 1 51.17 ? I3 T44 500 X 1 HETATM 22 I I3' T44 . . . H 3 33.081 43.376 98.336 1 57.51 ? I3' T44 500 X 1 HETATM 23 I I5 T44 . . . H 3 27.73 40.643 96.595 1 53.82 ? I5 T44 500 X 1 HETATM 24 I I5' T44 . . . H 3 33.501 37.83 95.851 1 72.42 ? I5' T44 500 X 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 24 #