data_1Y13 # _model_server_result.job_id 04M2dZwbdSc0sHHms0fNGA _model_server_result.datetime_utc '2024-11-14 15:48:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1y13 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":174}' # _entry.id 1Y13 # _exptl.entry_id 1Y13 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1Y13 _cell.length_a 103.319 _cell.length_b 103.319 _cell.length_c 131.111 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Y13 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 author_and_software_defined_assembly 1 PQS trimeric 3 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L 1 1,2 A,B,C,D,E,F,G,H,I,J,K,L 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 103.319 103.319 65.5555 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 F N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 149 A GLU 141 1_555 A N MSE 150 A MSE 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C MSE 150 A MSE 142 1_555 A N ASP 151 A ASP 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 B C GLU 149 B GLU 141 1_555 B N MSE 150 B MSE 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 B C MSE 150 B MSE 142 1_555 B N ASP 151 B ASP 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale5 C C GLU 149 C GLU 141 1_555 C N MSE 150 C MSE 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 C C MSE 150 C MSE 142 1_555 C N ASP 151 C ASP 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? metalc ? metalc1 A NE2 HIS 37 A HIS 29 1_555 D ZN ZN . A ZN 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc2 A NE2 HIS 49 A HIS 41 1_555 D ZN ZN . A ZN 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc3 A NE2 HIS 51 A HIS 43 1_555 D ZN ZN . A ZN 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc4 D ZN ZN . A ZN 174 1_555 E O9 BIO . A BIO 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc5 D ZN ZN . A ZN 174 1_555 E O10 BIO . A BIO 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? metalc ? metalc6 B NE2 HIS 37 B HIS 29 1_555 F ZN ZN . B ZN 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc7 B NE2 HIS 49 B HIS 41 1_555 F ZN ZN . B ZN 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc8 B NE2 HIS 51 B HIS 43 1_555 F ZN ZN . B ZN 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc9 F ZN ZN . B ZN 174 1_555 G O9 BIO . B BIO 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc10 F ZN ZN . B ZN 174 1_555 G O10 BIO . B BIO 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc11 C NE2 HIS 37 C HIS 29 1_555 H ZN ZN . C ZN 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc12 C NE2 HIS 49 C HIS 41 1_555 H ZN ZN . C ZN 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc13 C NE2 HIS 51 C HIS 43 1_555 H ZN ZN . C ZN 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc14 H ZN ZN . C ZN 174 1_555 I O9 BIO . C BIO 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc15 H ZN ZN . C ZN 174 1_555 I O10 BIO . C BIO 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1Y13 _atom_sites.fract_transf_matrix[1][1] 0.009679 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009679 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007627 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 ZN A 1 174 174 ZN ZN . E 3 BIO A 1 175 175 BIO BIO . F 2 ZN B 1 174 174 ZN ZN . G 3 BIO B 1 175 175 BIO BIO . H 2 ZN C 1 174 174 ZN ZN . I 3 BIO C 1 175 175 BIO BIO . J 4 HOH A 1 176 3 HOH HOH . J 4 HOH A 2 177 7 HOH HOH . J 4 HOH A 3 178 8 HOH HOH . J 4 HOH A 4 179 11 HOH HOH . J 4 HOH A 5 180 13 HOH HOH . J 4 HOH A 6 181 14 HOH HOH . J 4 HOH A 7 182 18 HOH HOH . J 4 HOH A 8 183 19 HOH HOH . J 4 HOH A 9 184 20 HOH HOH . J 4 HOH A 10 185 21 HOH HOH . J 4 HOH A 11 186 22 HOH HOH . J 4 HOH A 12 187 23 HOH HOH . J 4 HOH A 13 188 24 HOH HOH . J 4 HOH A 14 189 28 HOH HOH . J 4 HOH A 15 190 31 HOH HOH . J 4 HOH A 16 191 32 HOH HOH . J 4 HOH A 17 192 33 HOH HOH . J 4 HOH A 18 193 37 HOH HOH . J 4 HOH A 19 194 38 HOH HOH . J 4 HOH A 20 195 41 HOH HOH . J 4 HOH A 21 196 42 HOH HOH . J 4 HOH A 22 197 43 HOH HOH . J 4 HOH A 23 198 46 HOH HOH . J 4 HOH A 24 199 48 HOH HOH . J 4 HOH A 25 200 49 HOH HOH . J 4 HOH A 26 201 50 HOH HOH . J 4 HOH A 27 202 51 HOH HOH . J 4 HOH A 28 203 56 HOH HOH . J 4 HOH A 29 204 58 HOH HOH . J 4 HOH A 30 205 59 HOH HOH . J 4 HOH A 31 206 61 HOH HOH . J 4 HOH A 32 207 62 HOH HOH . J 4 HOH A 33 208 63 HOH HOH . J 4 HOH A 34 209 64 HOH HOH . J 4 HOH A 35 210 69 HOH HOH . J 4 HOH A 36 211 70 HOH HOH . J 4 HOH A 37 212 71 HOH HOH . J 4 HOH A 38 213 72 HOH HOH . J 4 HOH A 39 214 78 HOH HOH . J 4 HOH A 40 215 79 HOH HOH . J 4 HOH A 41 216 81 HOH HOH . J 4 HOH A 42 217 83 HOH HOH . J 4 HOH A 43 218 84 HOH HOH . J 4 HOH A 44 219 91 HOH HOH . J 4 HOH A 45 220 98 HOH HOH . J 4 HOH A 46 221 103 HOH HOH . J 4 HOH A 47 222 107 HOH HOH . J 4 HOH A 48 223 109 HOH HOH . J 4 HOH A 49 224 111 HOH HOH . J 4 HOH A 50 225 112 HOH HOH . J 4 HOH A 51 226 114 HOH HOH . J 4 HOH A 52 227 115 HOH HOH . J 4 HOH A 53 228 116 HOH HOH . J 4 HOH A 54 229 117 HOH HOH . J 4 HOH A 55 230 119 HOH HOH . J 4 HOH A 56 231 121 HOH HOH . J 4 HOH A 57 232 125 HOH HOH . K 4 HOH B 1 176 1 HOH HOH . K 4 HOH B 2 177 2 HOH HOH . K 4 HOH B 3 178 4 HOH HOH . K 4 HOH B 4 179 5 HOH HOH . K 4 HOH B 5 180 6 HOH HOH . K 4 HOH B 6 181 10 HOH HOH . K 4 HOH B 7 182 12 HOH HOH . K 4 HOH B 8 183 15 HOH HOH . K 4 HOH B 9 184 17 HOH HOH . K 4 HOH B 10 185 27 HOH HOH . K 4 HOH B 11 186 29 HOH HOH . K 4 HOH B 12 187 30 HOH HOH . K 4 HOH B 13 188 34 HOH HOH . K 4 HOH B 14 189 35 HOH HOH . K 4 HOH B 15 190 36 HOH HOH . K 4 HOH B 16 191 39 HOH HOH . K 4 HOH B 17 192 40 HOH HOH . K 4 HOH B 18 193 44 HOH HOH . K 4 HOH B 19 194 52 HOH HOH . K 4 HOH B 20 195 53 HOH HOH . K 4 HOH B 21 196 54 HOH HOH . K 4 HOH B 22 197 55 HOH HOH . K 4 HOH B 23 198 57 HOH HOH . K 4 HOH B 24 199 60 HOH HOH . K 4 HOH B 25 200 65 HOH HOH . K 4 HOH B 26 201 67 HOH HOH . K 4 HOH B 27 202 68 HOH HOH . K 4 HOH B 28 203 73 HOH HOH . K 4 HOH B 29 204 77 HOH HOH . K 4 HOH B 30 205 80 HOH HOH . K 4 HOH B 31 206 82 HOH HOH . K 4 HOH B 32 207 85 HOH HOH . K 4 HOH B 33 208 86 HOH HOH . K 4 HOH B 34 209 87 HOH HOH . K 4 HOH B 35 210 88 HOH HOH . K 4 HOH B 36 211 89 HOH HOH . K 4 HOH B 37 212 92 HOH HOH . K 4 HOH B 38 213 95 HOH HOH . K 4 HOH B 39 214 96 HOH HOH . K 4 HOH B 40 215 100 HOH HOH . K 4 HOH B 41 216 104 HOH HOH . K 4 HOH B 42 217 106 HOH HOH . K 4 HOH B 43 218 110 HOH HOH . K 4 HOH B 44 219 113 HOH HOH . K 4 HOH B 45 220 118 HOH HOH . K 4 HOH B 46 221 122 HOH HOH . K 4 HOH B 47 222 123 HOH HOH . K 4 HOH B 48 223 124 HOH HOH . K 4 HOH B 49 224 126 HOH HOH . K 4 HOH B 50 225 127 HOH HOH . L 4 HOH C 1 176 9 HOH HOH . L 4 HOH C 2 177 16 HOH HOH . L 4 HOH C 3 178 25 HOH HOH . L 4 HOH C 4 179 45 HOH HOH . L 4 HOH C 5 180 47 HOH HOH . L 4 HOH C 6 181 66 HOH HOH . L 4 HOH C 7 182 74 HOH HOH . L 4 HOH C 8 183 75 HOH HOH . L 4 HOH C 9 184 76 HOH HOH . L 4 HOH C 10 185 90 HOH HOH . L 4 HOH C 11 186 93 HOH HOH . L 4 HOH C 12 187 94 HOH HOH . L 4 HOH C 13 188 97 HOH HOH . L 4 HOH C 14 189 99 HOH HOH . L 4 HOH C 15 190 101 HOH HOH . L 4 HOH C 16 191 102 HOH HOH . L 4 HOH C 17 192 105 HOH HOH . L 4 HOH C 18 193 108 HOH HOH . L 4 HOH C 19 194 120 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x 89.418 _atom_site.Cartn_y 35.407 _atom_site.Cartn_z 25.636 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 64.68 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 174 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #