data_1Y17
#
_model_server_result.job_id            BBp3PMc2y3Qsyn-TTeIw3A 
_model_server_result.datetime_utc      '2024-12-26 23:52:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1y17 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1001}' 
#
_entry.id    1Y17 
#
_exptl.entry_id    1Y17 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.39 
_cell.angle_gamma         90 
_cell.entry_id            1Y17 
_cell.length_a            34.944 
_cell.length_b            53.894 
_cell.length_c            68.087 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1Y17 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 2 A CYS 2 1_555 A SG CYS 13 A CYS 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf3 A SG CYS 79 A CYS 79 1_555 B SG CYS 75 B CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf4 A SG CYS 102 A CYS 102 1_555 A SG CYS 119 A CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf5 B SG CYS 2 B CYS 2 1_555 B SG CYS 13 B CYS 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf6 B SG CYS 30 B CYS 30 1_555 B SG CYS 119 B CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf7 B SG CYS 96 B CYS 96 1_555 B SG CYS 111 B CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
metalc ? metalc1 A OG SER 41 A SER 41 1_555 C CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? 
metalc ? metalc2 A O SER 41 A SER 41 1_555 C CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? 
metalc ? metalc3 A OE2 GLU 43 A GLU 43 1_555 C CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.201 ? 
metalc ? metalc4 A OE1 GLU 47 A GLU 47 1_555 C CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.301 ? 
metalc ? metalc5 A OE2 GLU 47 A GLU 47 1_555 C CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? 
metalc ? metalc6 A OE2 GLU 128 A GLU 128 1_555 C CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? 
metalc ? metalc7 A OE1 GLU 128 A GLU 128 1_555 C CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.826 ? 
metalc ? metalc8 B O SER 41 B SER 41 1_555 D CA CA . B CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? 
metalc ? metalc9 B OG SER 41 B SER 41 1_555 D CA CA . B CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.707 ? 
metalc ? metalc10 B OE1 GLN 43 B GLN 43 1_555 D CA CA . B CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.098 ? 
metalc ? metalc11 B OE2 GLU 47 B GLU 47 1_555 D CA CA . B CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? 
metalc ? metalc12 B OE1 GLU 120 B GLU 120 1_555 D CA CA . B CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.024 ? 
metalc ? metalc13 B OE2 GLU 120 B GLU 120 1_555 D CA CA . B CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1Y17 
_atom_sites.fract_transf_matrix[1][1]    0.028617 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004221 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018555 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014846 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 CA A 1 1001 1 CA CA . 
D 3 CA B 1 1002 2 CA CA . 
E 4 HOH A 1 1002 1 HOH TIP . 
E 4 HOH A 2 1003 2 HOH TIP . 
E 4 HOH A 3 1004 3 HOH TIP . 
E 4 HOH A 4 1005 4 HOH TIP . 
E 4 HOH A 5 1006 6 HOH TIP . 
E 4 HOH A 6 1007 7 HOH TIP . 
E 4 HOH A 7 1008 8 HOH TIP . 
E 4 HOH A 8 1009 9 HOH TIP . 
E 4 HOH A 9 1010 12 HOH TIP . 
E 4 HOH A 10 1011 13 HOH TIP . 
E 4 HOH A 11 1012 15 HOH TIP . 
E 4 HOH A 12 1013 16 HOH TIP . 
E 4 HOH A 13 1014 17 HOH TIP . 
E 4 HOH A 14 1015 19 HOH TIP . 
E 4 HOH A 15 1016 21 HOH TIP . 
E 4 HOH A 16 1017 22 HOH TIP . 
E 4 HOH A 17 1018 23 HOH TIP . 
E 4 HOH A 18 1019 24 HOH TIP . 
E 4 HOH A 19 1020 25 HOH TIP . 
E 4 HOH A 20 1021 27 HOH TIP . 
E 4 HOH A 21 1022 28 HOH TIP . 
E 4 HOH A 22 1023 37 HOH TIP . 
E 4 HOH A 23 1024 39 HOH TIP . 
E 4 HOH A 24 1025 40 HOH TIP . 
E 4 HOH A 25 1026 42 HOH TIP . 
E 4 HOH A 26 1027 43 HOH TIP . 
E 4 HOH A 27 1028 44 HOH TIP . 
E 4 HOH A 28 1029 50 HOH TIP . 
E 4 HOH A 29 1030 51 HOH TIP . 
E 4 HOH A 30 1031 52 HOH TIP . 
E 4 HOH A 31 1032 56 HOH TIP . 
E 4 HOH A 32 1033 57 HOH TIP . 
E 4 HOH A 33 1034 61 HOH TIP . 
E 4 HOH A 34 1035 62 HOH TIP . 
E 4 HOH A 35 1036 63 HOH TIP . 
E 4 HOH A 36 1037 65 HOH TIP . 
E 4 HOH A 37 1038 69 HOH TIP . 
E 4 HOH A 38 1039 70 HOH TIP . 
E 4 HOH A 39 1040 73 HOH TIP . 
E 4 HOH A 40 1041 74 HOH TIP . 
F 4 HOH B 1 1003 5 HOH TIP . 
F 4 HOH B 2 1004 10 HOH TIP . 
F 4 HOH B 3 1005 11 HOH TIP . 
F 4 HOH B 4 1006 14 HOH TIP . 
F 4 HOH B 5 1007 18 HOH TIP . 
F 4 HOH B 6 1008 20 HOH TIP . 
F 4 HOH B 7 1009 26 HOH TIP . 
F 4 HOH B 8 1010 29 HOH TIP . 
F 4 HOH B 9 1011 30 HOH TIP . 
F 4 HOH B 10 1012 31 HOH TIP . 
F 4 HOH B 11 1013 32 HOH TIP . 
F 4 HOH B 12 1014 33 HOH TIP . 
F 4 HOH B 13 1015 34 HOH TIP . 
F 4 HOH B 14 1016 35 HOH TIP . 
F 4 HOH B 15 1017 36 HOH TIP . 
F 4 HOH B 16 1018 38 HOH TIP . 
F 4 HOH B 17 1019 41 HOH TIP . 
F 4 HOH B 18 1020 45 HOH TIP . 
F 4 HOH B 19 1021 46 HOH TIP . 
F 4 HOH B 20 1022 47 HOH TIP . 
F 4 HOH B 21 1023 48 HOH TIP . 
F 4 HOH B 22 1024 49 HOH TIP . 
F 4 HOH B 23 1025 53 HOH TIP . 
F 4 HOH B 24 1026 54 HOH TIP . 
F 4 HOH B 25 1027 55 HOH TIP . 
F 4 HOH B 26 1028 58 HOH TIP . 
F 4 HOH B 27 1029 59 HOH TIP . 
F 4 HOH B 28 1030 60 HOH TIP . 
F 4 HOH B 29 1031 68 HOH TIP . 
F 4 HOH B 30 1032 71 HOH TIP . 
F 4 HOH B 31 1033 72 HOH TIP . 
F 4 HOH B 32 1034 75 HOH TIP . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -10.168 
_atom_site.Cartn_y               -2.641 
_atom_site.Cartn_z               26.861 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        39.27 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           1001 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           1 
#