data_1Y2F # _model_server_result.job_id xHqay5BGB1-S_Dc7U_jAlw _model_server_result.datetime_utc '2024-11-22 20:19:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1y2f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 1Y2F # _exptl.entry_id 1Y2F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 423.942 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-{2-[4-(2-AMINOETHYL)PIPERAZIN-1-YL]PYRIDIN-4-YL}-N-(3-CHLORO-4-METHYLPHENYL)PYRIMIDIN-2-AMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1Y2F _cell.length_a 44.973 _cell.length_b 50.614 _cell.length_c 84.399 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Y2F _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H26 Cl N7' _chem_comp.formula_weight 423.942 _chem_comp.id WAI _chem_comp.mon_nstd_flag . _chem_comp.name 4-{2-[4-(2-AMINOETHYL)PIPERAZIN-1-YL]PYRIDIN-4-YL}-N-(3-CHLORO-4-METHYLPHENYL)PYRIMIDIN-2-AMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 WAI doub 335 n y C1 C6 WAI sing 336 n y C1 C7 WAI sing 337 n y C2 C3 WAI sing 338 n y C2 H2 WAI sing 339 n n C3 N4 WAI doub 340 n y C3 N34 WAI sing 341 n n N4 C5 WAI sing 342 n y C5 C6 WAI doub 343 n y C5 H5 WAI sing 344 n n C6 H6 WAI sing 345 n n C7 C8 WAI doub 346 n y C7 N12 WAI sing 347 n y C8 C9 WAI sing 348 n y C8 H8 WAI sing 349 n n C9 N10 WAI doub 350 n y C9 H9 WAI sing 351 n n N10 C11 WAI sing 352 n y C11 N12 WAI doub 353 n y C11 N13 WAI sing 354 n n N13 C14 WAI sing 355 n n N13 H13 WAI sing 356 n n C14 C15 WAI doub 357 n y C14 C19 WAI sing 358 n y C15 C16 WAI sing 359 n y C15 H15 WAI sing 360 n n C16 C17 WAI doub 361 n y C16 CL24 WAI sing 362 n n C17 C18 WAI sing 363 n y C17 C20 WAI sing 364 n n C18 C19 WAI doub 365 n y C18 H18 WAI sing 366 n n C19 H19 WAI sing 367 n n C20 H201 WAI sing 368 n n C20 H202 WAI sing 369 n n C20 H203 WAI sing 370 n n N34 C35 WAI sing 371 n n N34 C39 WAI sing 372 n n C35 C36 WAI sing 373 n n C35 H351 WAI sing 374 n n C35 H352 WAI sing 375 n n C36 N37 WAI sing 376 n n C36 H361 WAI sing 377 n n C36 H362 WAI sing 378 n n N37 C38 WAI sing 379 n n N37 C48 WAI sing 380 n n C38 C39 WAI sing 381 n n C38 H381 WAI sing 382 n n C38 H382 WAI sing 383 n n C39 H391 WAI sing 384 n n C39 H392 WAI sing 385 n n C48 C49 WAI sing 386 n n C48 H481 WAI sing 387 n n C48 H482 WAI sing 388 n n C49 N52 WAI sing 389 n n C49 H491 WAI sing 390 n n C49 H492 WAI sing 391 n n N52 H521 WAI sing 392 n n N52 H522 WAI sing 393 n n # _atom_sites.entry_id 1Y2F _atom_sites.fract_transf_matrix[1][1] 0.022236 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019757 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011848 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 WAI A 1 300 300 WAI WAI . C 3 HOH A 1 301 1 HOH HOH . C 3 HOH A 2 302 2 HOH HOH . C 3 HOH A 3 303 3 HOH HOH . C 3 HOH A 4 304 4 HOH HOH . C 3 HOH A 5 305 5 HOH HOH . C 3 HOH A 6 306 6 HOH HOH . C 3 HOH A 7 307 7 HOH HOH . C 3 HOH A 8 308 8 HOH HOH . C 3 HOH A 9 309 9 HOH HOH . C 3 HOH A 10 310 10 HOH HOH . C 3 HOH A 11 311 11 HOH HOH . C 3 HOH A 12 312 12 HOH HOH . C 3 HOH A 13 313 13 HOH HOH . C 3 HOH A 14 314 14 HOH HOH . C 3 HOH A 15 315 15 HOH HOH . C 3 HOH A 16 316 16 HOH HOH . C 3 HOH A 17 317 17 HOH HOH . C 3 HOH A 18 318 18 HOH HOH . C 3 HOH A 19 319 19 HOH HOH . C 3 HOH A 20 320 20 HOH HOH . C 3 HOH A 21 321 21 HOH HOH . C 3 HOH A 22 322 22 HOH HOH . C 3 HOH A 23 323 23 HOH HOH . C 3 HOH A 24 324 24 HOH HOH . C 3 HOH A 25 325 25 HOH HOH . C 3 HOH A 26 326 26 HOH HOH . C 3 HOH A 27 327 27 HOH HOH . C 3 HOH A 28 328 28 HOH HOH . C 3 HOH A 29 329 29 HOH HOH . C 3 HOH A 30 330 30 HOH HOH . C 3 HOH A 31 331 31 HOH HOH . C 3 HOH A 32 332 32 HOH HOH . C 3 HOH A 33 333 33 HOH HOH . C 3 HOH A 34 334 34 HOH HOH . C 3 HOH A 35 335 35 HOH HOH . C 3 HOH A 36 336 36 HOH HOH . C 3 HOH A 37 337 37 HOH HOH . C 3 HOH A 38 338 38 HOH HOH . C 3 HOH A 39 339 39 HOH HOH . C 3 HOH A 40 340 40 HOH HOH . C 3 HOH A 41 341 41 HOH HOH . C 3 HOH A 42 342 42 HOH HOH . C 3 HOH A 43 343 43 HOH HOH . C 3 HOH A 44 344 44 HOH HOH . C 3 HOH A 45 345 45 HOH HOH . C 3 HOH A 46 346 46 HOH HOH . C 3 HOH A 47 347 47 HOH HOH . C 3 HOH A 48 348 48 HOH HOH . C 3 HOH A 49 349 49 HOH HOH . C 3 HOH A 50 350 50 HOH HOH . C 3 HOH A 51 351 51 HOH HOH . C 3 HOH A 52 352 52 HOH HOH . C 3 HOH A 53 353 53 HOH HOH . C 3 HOH A 54 354 54 HOH HOH . C 3 HOH A 55 355 55 HOH HOH . C 3 HOH A 56 356 56 HOH HOH . C 3 HOH A 57 357 57 HOH HOH . C 3 HOH A 58 358 58 HOH HOH . C 3 HOH A 59 359 59 HOH HOH . C 3 HOH A 60 360 60 HOH HOH . C 3 HOH A 61 361 61 HOH HOH . C 3 HOH A 62 362 63 HOH HOH . C 3 HOH A 63 363 64 HOH HOH . C 3 HOH A 64 364 65 HOH HOH . C 3 HOH A 65 365 66 HOH HOH . C 3 HOH A 66 366 67 HOH HOH . C 3 HOH A 67 367 68 HOH HOH . C 3 HOH A 68 368 69 HOH HOH . C 3 HOH A 69 369 70 HOH HOH . C 3 HOH A 70 370 71 HOH HOH . C 3 HOH A 71 371 72 HOH HOH . C 3 HOH A 72 372 73 HOH HOH . C 3 HOH A 73 373 74 HOH HOH . C 3 HOH A 74 374 75 HOH HOH . C 3 HOH A 75 375 76 HOH HOH . C 3 HOH A 76 376 77 HOH HOH . C 3 HOH A 77 377 78 HOH HOH . C 3 HOH A 78 378 79 HOH HOH . C 3 HOH A 79 379 80 HOH HOH . C 3 HOH A 80 380 81 HOH HOH . C 3 HOH A 81 381 82 HOH HOH . C 3 HOH A 82 382 83 HOH HOH . C 3 HOH A 83 383 84 HOH HOH . C 3 HOH A 84 384 85 HOH HOH . C 3 HOH A 85 385 86 HOH HOH . C 3 HOH A 86 386 87 HOH HOH . C 3 HOH A 87 387 88 HOH HOH . C 3 HOH A 88 388 89 HOH HOH . C 3 HOH A 89 389 90 HOH HOH . C 3 HOH A 90 390 91 HOH HOH . C 3 HOH A 91 391 92 HOH HOH . C 3 HOH A 92 392 93 HOH HOH . C 3 HOH A 93 393 94 HOH HOH . C 3 HOH A 94 394 95 HOH HOH . C 3 HOH A 95 395 96 HOH HOH . C 3 HOH A 96 396 97 HOH HOH . C 3 HOH A 97 397 98 HOH HOH . C 3 HOH A 98 398 99 HOH HOH . C 3 HOH A 99 399 100 HOH HOH . C 3 HOH A 100 400 101 HOH HOH . C 3 HOH A 101 401 102 HOH HOH . C 3 HOH A 102 402 103 HOH HOH . C 3 HOH A 103 403 104 HOH HOH . C 3 HOH A 104 404 105 HOH HOH . C 3 HOH A 105 405 106 HOH HOH . C 3 HOH A 106 406 107 HOH HOH . C 3 HOH A 107 407 108 HOH HOH . C 3 HOH A 108 408 109 HOH HOH . C 3 HOH A 109 409 110 HOH HOH . C 3 HOH A 110 410 111 HOH HOH . C 3 HOH A 111 411 112 HOH HOH . C 3 HOH A 112 412 113 HOH HOH . C 3 HOH A 113 413 114 HOH HOH . C 3 HOH A 114 414 115 HOH HOH . C 3 HOH A 115 415 116 HOH HOH . C 3 HOH A 116 416 117 HOH HOH . C 3 HOH A 117 417 118 HOH HOH . C 3 HOH A 118 418 119 HOH HOH . C 3 HOH A 119 419 120 HOH HOH . C 3 HOH A 120 420 121 HOH HOH . C 3 HOH A 121 421 122 HOH HOH . C 3 HOH A 122 422 123 HOH HOH . C 3 HOH A 123 423 124 HOH HOH . C 3 HOH A 124 424 126 HOH HOH . C 3 HOH A 125 425 127 HOH HOH . C 3 HOH A 126 426 128 HOH HOH . C 3 HOH A 127 427 129 HOH HOH . C 3 HOH A 128 428 130 HOH HOH . C 3 HOH A 129 429 131 HOH HOH . C 3 HOH A 130 430 132 HOH HOH . C 3 HOH A 131 431 133 HOH HOH . C 3 HOH A 132 432 134 HOH HOH . C 3 HOH A 133 433 135 HOH HOH . C 3 HOH A 134 434 136 HOH HOH . C 3 HOH A 135 435 137 HOH HOH . C 3 HOH A 136 436 138 HOH HOH . C 3 HOH A 137 437 139 HOH HOH . C 3 HOH A 138 438 140 HOH HOH . C 3 HOH A 139 439 141 HOH HOH . C 3 HOH A 140 440 142 HOH HOH . C 3 HOH A 141 441 143 HOH HOH . C 3 HOH A 142 442 144 HOH HOH . C 3 HOH A 143 443 145 HOH HOH . C 3 HOH A 144 444 146 HOH HOH . C 3 HOH A 145 445 147 HOH HOH . C 3 HOH A 146 446 148 HOH HOH . C 3 HOH A 147 447 149 HOH HOH . C 3 HOH A 148 448 151 HOH HOH . C 3 HOH A 149 449 152 HOH HOH . C 3 HOH A 150 450 153 HOH HOH . C 3 HOH A 151 451 154 HOH HOH . C 3 HOH A 152 452 155 HOH HOH . C 3 HOH A 153 453 156 HOH HOH . C 3 HOH A 154 454 158 HOH HOH . C 3 HOH A 155 455 159 HOH HOH . C 3 HOH A 156 456 160 HOH HOH . C 3 HOH A 157 457 161 HOH HOH . C 3 HOH A 158 458 162 HOH HOH . C 3 HOH A 159 459 163 HOH HOH . C 3 HOH A 160 460 164 HOH HOH . C 3 HOH A 161 461 165 HOH HOH . C 3 HOH A 162 462 166 HOH HOH . C 3 HOH A 163 463 167 HOH HOH . C 3 HOH A 164 464 168 HOH HOH . C 3 HOH A 165 465 169 HOH HOH . C 3 HOH A 166 466 170 HOH HOH . C 3 HOH A 167 467 171 HOH HOH . C 3 HOH A 168 468 172 HOH HOH . C 3 HOH A 169 469 173 HOH HOH . C 3 HOH A 170 470 174 HOH HOH . C 3 HOH A 171 471 175 HOH HOH . C 3 HOH A 172 472 176 HOH HOH . C 3 HOH A 173 473 177 HOH HOH . C 3 HOH A 174 474 178 HOH HOH . C 3 HOH A 175 475 179 HOH HOH . C 3 HOH A 176 476 180 HOH HOH . C 3 HOH A 177 477 181 HOH HOH . C 3 HOH A 178 478 182 HOH HOH . C 3 HOH A 179 479 183 HOH HOH . C 3 HOH A 180 480 184 HOH HOH . C 3 HOH A 181 481 185 HOH HOH . C 3 HOH A 182 482 186 HOH HOH . C 3 HOH A 183 483 187 HOH HOH . C 3 HOH A 184 484 188 HOH HOH . C 3 HOH A 185 485 189 HOH HOH . C 3 HOH A 186 486 190 HOH HOH . C 3 HOH A 187 487 191 HOH HOH . C 3 HOH A 188 488 192 HOH HOH . C 3 HOH A 189 489 193 HOH HOH . C 3 HOH A 190 490 194 HOH HOH . C 3 HOH A 191 491 195 HOH HOH . C 3 HOH A 192 492 196 HOH HOH . C 3 HOH A 193 493 197 HOH HOH . C 3 HOH A 194 494 198 HOH HOH . C 3 HOH A 195 495 199 HOH HOH . C 3 HOH A 196 496 201 HOH HOH . C 3 HOH A 197 497 202 HOH HOH . C 3 HOH A 198 498 203 HOH HOH . C 3 HOH A 199 499 204 HOH HOH . C 3 HOH A 200 500 205 HOH HOH . C 3 HOH A 201 501 206 HOH HOH . C 3 HOH A 202 502 207 HOH HOH . C 3 HOH A 203 503 208 HOH HOH . C 3 HOH A 204 504 209 HOH HOH . C 3 HOH A 205 505 210 HOH HOH . C 3 HOH A 206 506 211 HOH HOH . C 3 HOH A 207 507 212 HOH HOH . C 3 HOH A 208 508 213 HOH HOH . C 3 HOH A 209 509 214 HOH HOH . C 3 HOH A 210 510 215 HOH HOH . C 3 HOH A 211 511 216 HOH HOH . C 3 HOH A 212 512 217 HOH HOH . C 3 HOH A 213 513 218 HOH HOH . C 3 HOH A 214 514 219 HOH HOH . C 3 HOH A 215 515 220 HOH HOH . C 3 HOH A 216 516 221 HOH HOH . C 3 HOH A 217 517 222 HOH HOH . C 3 HOH A 218 518 223 HOH HOH . C 3 HOH A 219 519 224 HOH HOH . C 3 HOH A 220 520 225 HOH HOH . C 3 HOH A 221 521 226 HOH HOH . C 3 HOH A 222 522 227 HOH HOH . C 3 HOH A 223 523 228 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 WAI . . . B 2 19.659 10.831 41.464 1 11.57 ? C1 WAI 300 A 1 HETATM 2 C C2 WAI . . . B 2 19.372 11.939 42.232 1 14.35 ? C2 WAI 300 A 1 HETATM 3 C C3 WAI . . . B 2 18.71 11.773 43.457 1 18.94 ? C3 WAI 300 A 1 HETATM 4 N N4 WAI . . . B 2 18.309 10.568 43.916 1 18.28 ? N4 WAI 300 A 1 HETATM 5 C C5 WAI . . . B 2 18.574 9.524 43.157 1 15.3 ? C5 WAI 300 A 1 HETATM 6 C C6 WAI . . . B 2 19.253 9.582 41.938 1 13.66 ? C6 WAI 300 A 1 HETATM 7 C C7 WAI . . . B 2 20.379 10.919 40.157 1 10.98 ? C7 WAI 300 A 1 HETATM 8 C C8 WAI . . . B 2 20.731 9.813 39.391 1 12.96 ? C8 WAI 300 A 1 HETATM 9 C C9 WAI . . . B 2 21.414 10.058 38.201 1 12.49 ? C9 WAI 300 A 1 HETATM 10 N N10 WAI . . . B 2 21.715 11.28 37.748 1 13.34 ? N10 WAI 300 A 1 HETATM 11 C C11 WAI . . . B 2 21.338 12.291 38.511 1 11.39 ? C11 WAI 300 A 1 HETATM 12 N N12 WAI . . . B 2 20.701 12.143 39.679 1 10.88 ? N12 WAI 300 A 1 HETATM 13 N N13 WAI . . . B 2 21.597 13.568 38.15 1 10.78 ? N13 WAI 300 A 1 HETATM 14 C C14 WAI . . . B 2 21.211 14.685 38.826 1 11.71 ? C14 WAI 300 A 1 HETATM 15 C C15 WAI . . . B 2 20.183 14.91 39.753 1 10.22 ? C15 WAI 300 A 1 HETATM 16 C C16 WAI . . . B 2 20.011 16.188 40.327 1 9.04 ? C16 WAI 300 A 1 HETATM 17 C C17 WAI . . . B 2 20.852 17.244 39.955 1 9.96 ? C17 WAI 300 A 1 HETATM 18 C C18 WAI . . . B 2 21.852 17.014 39.009 1 12.51 ? C18 WAI 300 A 1 HETATM 19 C C19 WAI . . . B 2 22.023 15.744 38.46 1 12.66 ? C19 WAI 300 A 1 HETATM 20 C C20 WAI . . . B 2 20.726 18.655 40.497 1 11.42 ? C20 WAI 300 A 1 HETATM 21 CL CL24 WAI . . . B 2 18.747 16.406 41.469 1 1.88 ? CL24 WAI 300 A 1 HETATM 22 N N34 WAI . . . B 2 18.393 12.896 44.212 1 20.7 ? N34 WAI 300 A 1 HETATM 23 C C35 WAI . . . B 2 18.678 14.288 43.894 1 23.35 ? C35 WAI 300 A 1 HETATM 24 C C36 WAI . . . B 2 19.113 15.023 45.176 1 26.04 ? C36 WAI 300 A 1 HETATM 25 N N37 WAI . . . B 2 18.164 14.816 46.291 1 26.83 ? N37 WAI 300 A 1 HETATM 26 C C38 WAI . . . B 2 17.981 13.379 46.582 1 25.13 ? C38 WAI 300 A 1 HETATM 27 C C39 WAI . . . B 2 17.547 12.594 45.345 1 22.38 ? C39 WAI 300 A 1 HETATM 28 C C48 WAI . . . B 2 18.599 15.558 47.498 1 26.54 ? C48 WAI 300 A 1 HETATM 29 C C49 WAI . . . B 2 17.472 15.796 48.516 1 31.5 ? C49 WAI 300 A 1 HETATM 30 N N52 WAI . . . B 2 16.22 16.125 47.833 1 31.96 ? N52 WAI 300 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #