data_1Y2J # _model_server_result.job_id '_fRrihwcm8BFUr77HZCERA' _model_server_result.datetime_utc '2024-11-13 11:52:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1y2j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1002}' # _entry.id 1Y2J # _exptl.entry_id 1Y2J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1Y2J _cell.length_a 89.484 _cell.length_b 94.235 _cell.length_c 106.843 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Y2J _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 63 A THR 193 1_555 A N CME 64 A CME 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale2 A C CME 64 A CME 194 1_555 A N ILE 65 A ILE 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale3 B C THR 63 B THR 193 1_555 B N CME 64 B CME 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 B C CME 64 B CME 194 1_555 B N ILE 65 B ILE 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? metalc ? metalc1 A NE2 HIS 144 A HIS 274 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc2 A OD2 ASP 145 A ASP 275 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc3 A OD1 ASP 145 A ASP 275 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc4 A OD2 ASP 262 A ASP 392 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc5 C ZN ZN . A ZN 1001 1_555 I O HOH . A HOH 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc6 D MG MG . A MG 1002 1_555 I O HOH . A HOH 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.784 ? metalc ? metalc7 D MG MG . A MG 1002 1_555 I O HOH . A HOH 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc8 D MG MG . A MG 1002 1_555 I O HOH . A HOH 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? metalc ? metalc9 D MG MG . A MG 1002 1_555 I O HOH . A HOH 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc10 D MG MG . A MG 1002 1_555 I O HOH . A HOH 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc11 B NE2 HIS 108 B HIS 238 1_555 F ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc12 B OD2 ASP 145 B ASP 275 1_555 F ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc13 B OD1 ASP 145 B ASP 275 1_555 G MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.906 ? metalc ? metalc14 B OD2 ASP 262 B ASP 392 1_555 F ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc15 F ZN ZN . B ZN 1001 1_555 J O HOH . B HOH 2007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? metalc ? metalc16 G MG MG . B MG 1002 1_555 J O HOH . B HOH 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc17 G MG MG . B MG 1002 1_555 J O HOH . B HOH 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc18 G MG MG . B MG 1002 1_555 J O HOH . B HOH 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.801 ? metalc ? metalc19 G MG MG . B MG 1002 1_555 J O HOH . B HOH 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc20 G MG MG . B MG 1002 1_555 J O HOH . B HOH 2007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1Y2J _atom_sites.fract_transf_matrix[1][1] 0.011175 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010612 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00936 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 1001 1001 ZN ZN . D 3 MG A 1 1002 1002 MG MG . E 4 7DE A 1 101 101 7DE 7DE . F 2 ZN B 1 1001 1001 ZN ZN . G 3 MG B 1 1002 1002 MG MG . H 4 7DE B 1 102 102 7DE 7DE . I 5 HOH A 1 3 3 HOH HOH . I 5 HOH A 2 4 4 HOH HOH . I 5 HOH A 3 6 6 HOH HOH . I 5 HOH A 4 10 10 HOH HOH . I 5 HOH A 5 12 12 HOH HOH . I 5 HOH A 6 14 14 HOH HOH . I 5 HOH A 7 17 17 HOH HOH . I 5 HOH A 8 18 18 HOH HOH . I 5 HOH A 9 21 21 HOH HOH . I 5 HOH A 10 22 22 HOH HOH . I 5 HOH A 11 23 23 HOH HOH . I 5 HOH A 12 25 25 HOH HOH . I 5 HOH A 13 26 26 HOH HOH . I 5 HOH A 14 27 27 HOH HOH . I 5 HOH A 15 30 30 HOH HOH . I 5 HOH A 16 33 33 HOH HOH . I 5 HOH A 17 34 34 HOH HOH . I 5 HOH A 18 35 35 HOH HOH . I 5 HOH A 19 37 37 HOH HOH . I 5 HOH A 20 38 38 HOH HOH . I 5 HOH A 21 40 40 HOH HOH . I 5 HOH A 22 44 44 HOH HOH . I 5 HOH A 23 1003 1003 HOH HOH . I 5 HOH A 24 1004 1004 HOH HOH . I 5 HOH A 25 1005 1005 HOH HOH . I 5 HOH A 26 1006 1006 HOH HOH . I 5 HOH A 27 1007 1007 HOH HOH . I 5 HOH A 28 1008 1008 HOH HOH . J 5 HOH B 1 1 1 HOH HOH . J 5 HOH B 2 2 2 HOH HOH . J 5 HOH B 3 5 5 HOH HOH . J 5 HOH B 4 7 7 HOH HOH . J 5 HOH B 5 8 8 HOH HOH . J 5 HOH B 6 9 9 HOH HOH . J 5 HOH B 7 11 11 HOH HOH . J 5 HOH B 8 13 13 HOH HOH . J 5 HOH B 9 15 15 HOH HOH . J 5 HOH B 10 16 16 HOH HOH . J 5 HOH B 11 19 19 HOH HOH . J 5 HOH B 12 20 20 HOH HOH . J 5 HOH B 13 24 24 HOH HOH . J 5 HOH B 14 28 28 HOH HOH . J 5 HOH B 15 29 29 HOH HOH . J 5 HOH B 16 31 31 HOH HOH . J 5 HOH B 17 32 32 HOH HOH . J 5 HOH B 18 36 36 HOH HOH . J 5 HOH B 19 39 39 HOH HOH . J 5 HOH B 20 41 41 HOH HOH . J 5 HOH B 21 42 42 HOH HOH . J 5 HOH B 22 43 43 HOH HOH . J 5 HOH B 23 2003 2003 HOH HOH . J 5 HOH B 24 2004 2004 HOH HOH . J 5 HOH B 25 2005 2005 HOH HOH . J 5 HOH B 26 2006 2006 HOH HOH . J 5 HOH B 27 2007 2007 HOH HOH . J 5 HOH B 28 2008 2008 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 36.833 _atom_site.Cartn_y 4.939 _atom_site.Cartn_z 56.434 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 25.48 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1002 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 233 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #