data_1Y2J # _model_server_result.job_id EveVG9_yYp0Cq1TBavfmDg _model_server_result.datetime_utc '2024-11-27 15:09:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1y2j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":101}' # _entry.id 1Y2J # _exptl.entry_id 1Y2J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 289.287 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3,5-DIMETHYL-1-(3-NITROPHENYL)-1H-PYRAZOLE-4-CARBOXYLIC ACID ETHYL ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1Y2J _cell.length_a 89.484 _cell.length_b 94.235 _cell.length_c 106.843 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Y2J _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 63 A THR 193 1_555 A N CME 64 A CME 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale2 A C CME 64 A CME 194 1_555 A N ILE 65 A ILE 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale3 B C THR 63 B THR 193 1_555 B N CME 64 B CME 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 B C CME 64 B CME 194 1_555 B N ILE 65 B ILE 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? metalc ? metalc1 A NE2 HIS 144 A HIS 274 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc2 A OD2 ASP 145 A ASP 275 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc3 A OD1 ASP 145 A ASP 275 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc4 A OD2 ASP 262 A ASP 392 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc5 C ZN ZN . A ZN 1001 1_555 I O HOH . A HOH 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc6 D MG MG . A MG 1002 1_555 I O HOH . A HOH 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.784 ? metalc ? metalc7 D MG MG . A MG 1002 1_555 I O HOH . A HOH 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc8 D MG MG . A MG 1002 1_555 I O HOH . A HOH 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? metalc ? metalc9 D MG MG . A MG 1002 1_555 I O HOH . A HOH 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc10 D MG MG . A MG 1002 1_555 I O HOH . A HOH 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc11 B NE2 HIS 108 B HIS 238 1_555 F ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc12 B OD2 ASP 145 B ASP 275 1_555 F ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc13 B OD1 ASP 145 B ASP 275 1_555 G MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.906 ? metalc ? metalc14 B OD2 ASP 262 B ASP 392 1_555 F ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc15 F ZN ZN . B ZN 1001 1_555 J O HOH . B HOH 2007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? metalc ? metalc16 G MG MG . B MG 1002 1_555 J O HOH . B HOH 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc17 G MG MG . B MG 1002 1_555 J O HOH . B HOH 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc18 G MG MG . B MG 1002 1_555 J O HOH . B HOH 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.801 ? metalc ? metalc19 G MG MG . B MG 1002 1_555 J O HOH . B HOH 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc20 G MG MG . B MG 1002 1_555 J O HOH . B HOH 2007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? # _chem_comp.formula 'C14 H15 N3 O4' _chem_comp.formula_weight 289.287 _chem_comp.id 7DE _chem_comp.mon_nstd_flag . _chem_comp.name '3,5-DIMETHYL-1-(3-NITROPHENYL)-1H-PYRAZOLE-4-CARBOXYLIC ACID ETHYL ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O21 N19 7DE doub 1 n n N19 O20 7DE sing 2 n n N19 C12 7DE sing 3 n n C12 C13 7DE doub 4 n y C12 C11 7DE sing 5 n y C13 C1 7DE sing 6 n y C13 H13 7DE sing 7 n n C11 C3 7DE doub 8 n y C11 H11 7DE sing 9 n n C3 C2 7DE sing 10 n y C3 N4 7DE sing 11 n y C2 C1 7DE doub 12 n y C2 H2 7DE sing 13 n n C1 H1 7DE sing 14 n n N4 C5 7DE sing 15 n y N4 N10 7DE sing 16 n y C5 C6 7DE sing 17 n n C5 C7 7DE doub 18 n y C6 H61 7DE sing 19 n n C6 H62 7DE sing 20 n n C6 H63 7DE sing 21 n n C7 C8 7DE sing 22 n y C7 C14 7DE sing 23 n n C8 N10 7DE doub 24 n y C8 C9 7DE sing 25 n n C9 H91 7DE sing 26 n n C9 H92 7DE sing 27 n n C9 H93 7DE sing 28 n n C14 O18 7DE doub 29 n n C14 O15 7DE sing 30 n n O15 C16 7DE sing 31 n n C16 C17 7DE sing 32 n n C16 H161 7DE sing 33 n n C16 H162 7DE sing 34 n n C17 H171 7DE sing 35 n n C17 H172 7DE sing 36 n n C17 H173 7DE sing 37 n n # _atom_sites.entry_id 1Y2J _atom_sites.fract_transf_matrix[1][1] 0.011175 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010612 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00936 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 1001 1001 ZN ZN . D 3 MG A 1 1002 1002 MG MG . E 4 7DE A 1 101 101 7DE 7DE . F 2 ZN B 1 1001 1001 ZN ZN . G 3 MG B 1 1002 1002 MG MG . H 4 7DE B 1 102 102 7DE 7DE . I 5 HOH A 1 3 3 HOH HOH . I 5 HOH A 2 4 4 HOH HOH . I 5 HOH A 3 6 6 HOH HOH . I 5 HOH A 4 10 10 HOH HOH . I 5 HOH A 5 12 12 HOH HOH . I 5 HOH A 6 14 14 HOH HOH . I 5 HOH A 7 17 17 HOH HOH . I 5 HOH A 8 18 18 HOH HOH . I 5 HOH A 9 21 21 HOH HOH . I 5 HOH A 10 22 22 HOH HOH . I 5 HOH A 11 23 23 HOH HOH . I 5 HOH A 12 25 25 HOH HOH . I 5 HOH A 13 26 26 HOH HOH . I 5 HOH A 14 27 27 HOH HOH . I 5 HOH A 15 30 30 HOH HOH . I 5 HOH A 16 33 33 HOH HOH . I 5 HOH A 17 34 34 HOH HOH . I 5 HOH A 18 35 35 HOH HOH . I 5 HOH A 19 37 37 HOH HOH . I 5 HOH A 20 38 38 HOH HOH . I 5 HOH A 21 40 40 HOH HOH . I 5 HOH A 22 44 44 HOH HOH . I 5 HOH A 23 1003 1003 HOH HOH . I 5 HOH A 24 1004 1004 HOH HOH . I 5 HOH A 25 1005 1005 HOH HOH . I 5 HOH A 26 1006 1006 HOH HOH . I 5 HOH A 27 1007 1007 HOH HOH . I 5 HOH A 28 1008 1008 HOH HOH . J 5 HOH B 1 1 1 HOH HOH . J 5 HOH B 2 2 2 HOH HOH . J 5 HOH B 3 5 5 HOH HOH . J 5 HOH B 4 7 7 HOH HOH . J 5 HOH B 5 8 8 HOH HOH . J 5 HOH B 6 9 9 HOH HOH . J 5 HOH B 7 11 11 HOH HOH . J 5 HOH B 8 13 13 HOH HOH . J 5 HOH B 9 15 15 HOH HOH . J 5 HOH B 10 16 16 HOH HOH . J 5 HOH B 11 19 19 HOH HOH . J 5 HOH B 12 20 20 HOH HOH . J 5 HOH B 13 24 24 HOH HOH . J 5 HOH B 14 28 28 HOH HOH . J 5 HOH B 15 29 29 HOH HOH . J 5 HOH B 16 31 31 HOH HOH . J 5 HOH B 17 32 32 HOH HOH . J 5 HOH B 18 36 36 HOH HOH . J 5 HOH B 19 39 39 HOH HOH . J 5 HOH B 20 41 41 HOH HOH . J 5 HOH B 21 42 42 HOH HOH . J 5 HOH B 22 43 43 HOH HOH . J 5 HOH B 23 2003 2003 HOH HOH . J 5 HOH B 24 2004 2004 HOH HOH . J 5 HOH B 25 2005 2005 HOH HOH . J 5 HOH B 26 2006 2006 HOH HOH . J 5 HOH B 27 2007 2007 HOH HOH . J 5 HOH B 28 2008 2008 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O21 7DE . . . E 4 40.51 1.573 58.017 1 49.15 ? O21 7DE 101 A 1 HETATM 2 N N19 7DE . . . E 4 39.469 1.435 58.687 1 54.37 ? N19 7DE 101 A 1 HETATM 3 O O20 7DE . . . E 4 38.331 1.529 58.213 1 54.2 ? O20 7DE 101 A 1 HETATM 4 C C12 7DE . . . E 4 39.581 1.941 59.96 1 54.64 ? C12 7DE 101 A 1 HETATM 5 C C13 7DE . . . E 4 38.771 3.04 60.314 1 53.59 ? C13 7DE 101 A 1 HETATM 6 C C11 7DE . . . E 4 40.523 1.415 60.871 1 53.34 ? C11 7DE 101 A 1 HETATM 7 C C3 7DE . . . E 4 40.619 2.007 62.112 1 54.23 ? C3 7DE 101 A 1 HETATM 8 C C2 7DE . . . E 4 39.807 3.093 62.433 1 54.13 ? C2 7DE 101 A 1 HETATM 9 C C1 7DE . . . E 4 38.903 3.628 61.547 1 52.63 ? C1 7DE 101 A 1 HETATM 10 N N4 7DE . . . E 4 41.421 1.608 63.129 1 53.59 ? N4 7DE 101 A 1 HETATM 11 C C5 7DE . . . E 4 42.715 1.797 63.296 1 52.65 ? C5 7DE 101 A 1 HETATM 12 C C6 7DE . . . E 4 43.657 2.476 62.29 1 51.4 ? C6 7DE 101 A 1 HETATM 13 C C7 7DE . . . E 4 43.061 1.283 64.492 1 52.6 ? C7 7DE 101 A 1 HETATM 14 C C8 7DE . . . E 4 41.813 0.751 65.061 1 52.78 ? C8 7DE 101 A 1 HETATM 15 N N10 7DE . . . E 4 40.901 0.99 64.209 1 52.63 ? N10 7DE 101 A 1 HETATM 16 C C9 7DE . . . E 4 41.533 0.057 66.361 1 51.2 ? C9 7DE 101 A 1 HETATM 17 C C14 7DE . . . E 4 44.398 1.246 65.092 1 54.56 ? C14 7DE 101 A 1 HETATM 18 O O18 7DE . . . E 4 44.49 0.822 66.233 1 58.02 ? O18 7DE 101 A 1 HETATM 19 O O15 7DE . . . E 4 45.447 1.268 64.247 1 54.72 ? O15 7DE 101 A 1 HETATM 20 C C16 7DE . . . E 4 46.772 1.296 64.809 1 51.9 ? C16 7DE 101 A 1 HETATM 21 C C17 7DE . . . E 4 47.782 1.795 63.744 1 51.94 ? C17 7DE 101 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 21 #