data_1Y30 # _model_server_result.job_id '_fzZsGFjzY6nfbxRE7WqTA' _model_server_result.datetime_utc '2025-03-03 03:07:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1y30 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 1Y30 # _exptl.entry_id 1Y30 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.36 _cell.angle_gamma 90 _cell.entry_id 1Y30 _cell.length_a 46.851 _cell.length_b 55.238 _cell.length_c 54.829 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Y30 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 70 n n N1 C10 FMN doub 71 n n C2 O2 FMN doub 72 n n C2 N3 FMN sing 73 n n N3 C4 FMN sing 74 n n N3 HN3 FMN sing 75 n n C4 O4 FMN doub 76 n n C4 C4A FMN sing 77 n n C4A N5 FMN doub 78 n n C4A C10 FMN sing 79 n n N5 C5A FMN sing 80 n n C5A C6 FMN doub 81 n y C5A C9A FMN sing 82 n y C6 C7 FMN sing 83 n y C6 H6 FMN sing 84 n n C7 C7M FMN sing 85 n n C7 C8 FMN doub 86 n y C7M HM71 FMN sing 87 n n C7M HM72 FMN sing 88 n n C7M HM73 FMN sing 89 n n C8 C8M FMN sing 90 n n C8 C9 FMN sing 91 n y C8M HM81 FMN sing 92 n n C8M HM82 FMN sing 93 n n C8M HM83 FMN sing 94 n n C9 C9A FMN doub 95 n y C9 H9 FMN sing 96 n n C9A N10 FMN sing 97 n n N10 C10 FMN sing 98 n n N10 C1' FMN sing 99 n n C1' C2' FMN sing 100 n n C1' "H1'1" FMN sing 101 n n C1' "H1'2" FMN sing 102 n n C2' O2' FMN sing 103 n n C2' C3' FMN sing 104 n n C2' H2' FMN sing 105 n n O2' HO2' FMN sing 106 n n C3' O3' FMN sing 107 n n C3' C4' FMN sing 108 n n C3' H3' FMN sing 109 n n O3' HO3' FMN sing 110 n n C4' O4' FMN sing 111 n n C4' C5' FMN sing 112 n n C4' H4' FMN sing 113 n n O4' HO4' FMN sing 114 n n C5' O5' FMN sing 115 n n C5' "H5'1" FMN sing 116 n n C5' "H5'2" FMN sing 117 n n O5' P FMN sing 118 n n P O1P FMN doub 119 n n P O2P FMN sing 120 n n P O3P FMN sing 121 n n O2P HOP2 FMN sing 122 n n O3P HOP3 FMN sing 123 n n # _atom_sites.entry_id 1Y30 _atom_sites.fract_transf_matrix[1][1] 0.021344 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007084 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018103 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019217 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 301 301 FMN FMN . D 3 HOH A 1 302 18 HOH HOH . D 3 HOH A 2 303 19 HOH HOH . D 3 HOH A 3 304 20 HOH HOH . D 3 HOH A 4 305 21 HOH HOH . D 3 HOH A 5 306 37 HOH HOH . D 3 HOH A 6 307 38 HOH HOH . D 3 HOH A 7 308 39 HOH HOH . D 3 HOH A 8 309 40 HOH HOH . D 3 HOH A 9 310 41 HOH HOH . D 3 HOH A 10 311 42 HOH HOH . D 3 HOH A 11 312 43 HOH HOH . D 3 HOH A 12 313 44 HOH HOH . D 3 HOH A 13 314 47 HOH HOH . D 3 HOH A 14 315 48 HOH HOH . D 3 HOH A 15 316 49 HOH HOH . D 3 HOH A 16 317 50 HOH HOH . D 3 HOH A 17 318 51 HOH HOH . D 3 HOH A 18 319 52 HOH HOH . D 3 HOH A 19 320 55 HOH HOH . D 3 HOH A 20 321 56 HOH HOH . D 3 HOH A 21 322 57 HOH HOH . D 3 HOH A 22 323 58 HOH HOH . D 3 HOH A 23 324 59 HOH HOH . D 3 HOH A 24 325 60 HOH HOH . D 3 HOH A 25 326 61 HOH HOH . D 3 HOH A 26 327 62 HOH HOH . D 3 HOH A 27 328 63 HOH HOH . D 3 HOH A 28 329 64 HOH HOH . D 3 HOH A 29 330 65 HOH HOH . D 3 HOH A 30 331 66 HOH HOH . D 3 HOH A 31 332 72 HOH HOH . D 3 HOH A 32 333 73 HOH HOH . D 3 HOH A 33 334 74 HOH HOH . D 3 HOH A 34 335 75 HOH HOH . D 3 HOH A 35 336 76 HOH HOH . D 3 HOH A 36 337 77 HOH HOH . D 3 HOH A 37 338 78 HOH HOH . D 3 HOH A 38 339 79 HOH HOH . D 3 HOH A 39 340 80 HOH HOH . D 3 HOH A 40 341 82 HOH HOH . D 3 HOH A 41 342 83 HOH HOH . D 3 HOH A 42 343 84 HOH HOH . D 3 HOH A 43 344 85 HOH HOH . D 3 HOH A 44 345 90 HOH HOH . D 3 HOH A 45 346 92 HOH HOH . D 3 HOH A 46 347 93 HOH HOH . D 3 HOH A 47 348 94 HOH HOH . D 3 HOH A 48 349 95 HOH HOH . D 3 HOH A 49 350 96 HOH HOH . D 3 HOH A 50 351 97 HOH HOH . D 3 HOH A 51 352 115 HOH HOH . D 3 HOH A 52 353 116 HOH HOH . D 3 HOH A 53 354 120 HOH HOH . D 3 HOH A 54 355 121 HOH HOH . D 3 HOH A 55 356 123 HOH HOH . D 3 HOH A 56 357 124 HOH HOH . D 3 HOH A 57 358 125 HOH HOH . D 3 HOH A 58 359 126 HOH HOH . D 3 HOH A 59 360 127 HOH HOH . D 3 HOH A 60 361 128 HOH HOH . D 3 HOH A 61 362 129 HOH HOH . D 3 HOH A 62 363 130 HOH HOH . D 3 HOH A 63 364 131 HOH HOH . D 3 HOH A 64 365 133 HOH HOH . D 3 HOH A 65 366 137 HOH HOH . D 3 HOH A 66 367 138 HOH HOH . D 3 HOH A 67 368 139 HOH HOH . D 3 HOH A 68 369 142 HOH HOH . D 3 HOH A 69 370 143 HOH HOH . D 3 HOH A 70 371 144 HOH HOH . D 3 HOH A 71 372 146 HOH HOH . D 3 HOH A 72 373 147 HOH HOH . D 3 HOH A 73 374 150 HOH HOH . D 3 HOH A 74 375 151 HOH HOH . D 3 HOH A 75 376 152 HOH HOH . D 3 HOH A 76 377 153 HOH HOH . D 3 HOH A 77 378 154 HOH HOH . D 3 HOH A 78 379 155 HOH HOH . D 3 HOH A 79 380 157 HOH HOH . D 3 HOH A 80 381 158 HOH HOH . D 3 HOH A 81 382 159 HOH HOH . D 3 HOH A 82 383 160 HOH HOH . D 3 HOH A 83 384 163 HOH HOH . D 3 HOH A 84 385 167 HOH HOH . D 3 HOH A 85 386 168 HOH HOH . D 3 HOH A 86 387 176 HOH HOH . D 3 HOH A 87 388 177 HOH HOH . D 3 HOH A 88 389 179 HOH HOH . D 3 HOH A 89 390 180 HOH HOH . D 3 HOH A 90 391 181 HOH HOH . D 3 HOH A 91 392 182 HOH HOH . D 3 HOH A 92 393 190 HOH HOH . D 3 HOH A 93 394 191 HOH HOH . D 3 HOH A 94 395 192 HOH HOH . D 3 HOH A 95 396 194 HOH HOH . D 3 HOH A 96 397 195 HOH HOH . D 3 HOH A 97 398 196 HOH HOH . D 3 HOH A 98 399 201 HOH HOH . D 3 HOH A 99 400 205 HOH HOH . D 3 HOH A 100 401 206 HOH HOH . D 3 HOH A 101 402 209 HOH HOH . D 3 HOH A 102 403 210 HOH HOH . D 3 HOH A 103 404 212 HOH HOH . D 3 HOH A 104 405 213 HOH HOH . D 3 HOH A 105 406 214 HOH HOH . D 3 HOH A 106 407 218 HOH HOH . D 3 HOH A 107 408 219 HOH HOH . D 3 HOH A 108 409 220 HOH HOH . D 3 HOH A 109 410 224 HOH HOH . D 3 HOH A 110 411 225 HOH HOH . D 3 HOH A 111 412 226 HOH HOH . D 3 HOH A 112 413 227 HOH HOH . E 3 HOH B 1 148 1 HOH HOH . E 3 HOH B 2 149 2 HOH HOH . E 3 HOH B 3 150 3 HOH HOH . E 3 HOH B 4 151 4 HOH HOH . E 3 HOH B 5 152 5 HOH HOH . E 3 HOH B 6 153 6 HOH HOH . E 3 HOH B 7 154 7 HOH HOH . E 3 HOH B 8 155 8 HOH HOH . E 3 HOH B 9 156 9 HOH HOH . E 3 HOH B 10 157 10 HOH HOH . E 3 HOH B 11 158 11 HOH HOH . E 3 HOH B 12 159 12 HOH HOH . E 3 HOH B 13 160 13 HOH HOH . E 3 HOH B 14 161 14 HOH HOH . E 3 HOH B 15 162 15 HOH HOH . E 3 HOH B 16 163 16 HOH HOH . E 3 HOH B 17 164 17 HOH HOH . E 3 HOH B 18 165 22 HOH HOH . E 3 HOH B 19 166 23 HOH HOH . E 3 HOH B 20 167 24 HOH HOH . E 3 HOH B 21 168 25 HOH HOH . E 3 HOH B 22 169 26 HOH HOH . E 3 HOH B 23 170 27 HOH HOH . E 3 HOH B 24 171 28 HOH HOH . E 3 HOH B 25 172 29 HOH HOH . E 3 HOH B 26 173 30 HOH HOH . E 3 HOH B 27 174 31 HOH HOH . E 3 HOH B 28 175 32 HOH HOH . E 3 HOH B 29 176 33 HOH HOH . E 3 HOH B 30 177 34 HOH HOH . E 3 HOH B 31 178 35 HOH HOH . E 3 HOH B 32 179 36 HOH HOH . E 3 HOH B 33 180 45 HOH HOH . E 3 HOH B 34 181 46 HOH HOH . E 3 HOH B 35 182 53 HOH HOH . E 3 HOH B 36 183 54 HOH HOH . E 3 HOH B 37 184 67 HOH HOH . E 3 HOH B 38 185 68 HOH HOH . E 3 HOH B 39 186 69 HOH HOH . E 3 HOH B 40 187 70 HOH HOH . E 3 HOH B 41 188 71 HOH HOH . E 3 HOH B 42 189 81 HOH HOH . E 3 HOH B 43 190 86 HOH HOH . E 3 HOH B 44 191 87 HOH HOH . E 3 HOH B 45 192 88 HOH HOH . E 3 HOH B 46 193 89 HOH HOH . E 3 HOH B 47 194 91 HOH HOH . E 3 HOH B 48 195 98 HOH HOH . E 3 HOH B 49 196 99 HOH HOH . E 3 HOH B 50 197 100 HOH HOH . E 3 HOH B 51 198 101 HOH HOH . E 3 HOH B 52 199 102 HOH HOH . E 3 HOH B 53 200 103 HOH HOH . E 3 HOH B 54 201 104 HOH HOH . E 3 HOH B 55 202 105 HOH HOH . E 3 HOH B 56 203 106 HOH HOH . E 3 HOH B 57 204 107 HOH HOH . E 3 HOH B 58 205 108 HOH HOH . E 3 HOH B 59 206 109 HOH HOH . E 3 HOH B 60 207 110 HOH HOH . E 3 HOH B 61 208 111 HOH HOH . E 3 HOH B 62 209 112 HOH HOH . E 3 HOH B 63 210 113 HOH HOH . E 3 HOH B 64 211 114 HOH HOH . E 3 HOH B 65 212 117 HOH HOH . E 3 HOH B 66 213 118 HOH HOH . E 3 HOH B 67 214 119 HOH HOH . E 3 HOH B 68 215 122 HOH HOH . E 3 HOH B 69 216 132 HOH HOH . E 3 HOH B 70 217 134 HOH HOH . E 3 HOH B 71 218 135 HOH HOH . E 3 HOH B 72 219 136 HOH HOH . E 3 HOH B 73 220 140 HOH HOH . E 3 HOH B 74 221 141 HOH HOH . E 3 HOH B 75 222 145 HOH HOH . E 3 HOH B 76 223 148 HOH HOH . E 3 HOH B 77 224 149 HOH HOH . E 3 HOH B 78 225 156 HOH HOH . E 3 HOH B 79 226 161 HOH HOH . E 3 HOH B 80 227 162 HOH HOH . E 3 HOH B 81 228 164 HOH HOH . E 3 HOH B 82 229 165 HOH HOH . E 3 HOH B 83 230 166 HOH HOH . E 3 HOH B 84 231 169 HOH HOH . E 3 HOH B 85 232 170 HOH HOH . E 3 HOH B 86 233 171 HOH HOH . E 3 HOH B 87 234 172 HOH HOH . E 3 HOH B 88 235 173 HOH HOH . E 3 HOH B 89 236 174 HOH HOH . E 3 HOH B 90 237 175 HOH HOH . E 3 HOH B 91 238 178 HOH HOH . E 3 HOH B 92 239 183 HOH HOH . E 3 HOH B 93 240 184 HOH HOH . E 3 HOH B 94 241 185 HOH HOH . E 3 HOH B 95 242 186 HOH HOH . E 3 HOH B 96 243 187 HOH HOH . E 3 HOH B 97 244 188 HOH HOH . E 3 HOH B 98 245 189 HOH HOH . E 3 HOH B 99 246 193 HOH HOH . E 3 HOH B 100 247 197 HOH HOH . E 3 HOH B 101 248 198 HOH HOH . E 3 HOH B 102 249 199 HOH HOH . E 3 HOH B 103 250 200 HOH HOH . E 3 HOH B 104 251 202 HOH HOH . E 3 HOH B 105 252 203 HOH HOH . E 3 HOH B 106 253 204 HOH HOH . E 3 HOH B 107 254 207 HOH HOH . E 3 HOH B 108 255 208 HOH HOH . E 3 HOH B 109 256 211 HOH HOH . E 3 HOH B 110 257 215 HOH HOH . E 3 HOH B 111 258 216 HOH HOH . E 3 HOH B 112 259 217 HOH HOH . E 3 HOH B 113 260 221 HOH HOH . E 3 HOH B 114 261 222 HOH HOH . E 3 HOH B 115 262 223 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . C 2 12.341 27.052 44.566 1 54.56 ? N1 FMN 301 A 1 HETATM 2 C C2 FMN . . . C 2 12.286 27.896 43.47 1 54.43 ? C2 FMN 301 A 1 HETATM 3 O O2 FMN . . . C 2 12.47 29.094 43.549 1 54.78 ? O2 FMN 301 A 1 HETATM 4 N N3 FMN . . . C 2 11.998 27.278 42.231 1 54.25 ? N3 FMN 301 A 1 HETATM 5 C C4 FMN . . . C 2 11.759 25.885 41.996 1 54.26 ? C4 FMN 301 A 1 HETATM 6 O O4 FMN . . . C 2 11.52 25.478 40.86 1 53.99 ? O4 FMN 301 A 1 HETATM 7 C C4A FMN . . . C 2 11.825 25.078 43.145 1 54.11 ? C4A FMN 301 A 1 HETATM 8 N N5 FMN . . . C 2 11.63 23.729 43.158 1 53.58 ? N5 FMN 301 A 1 HETATM 9 C C5A FMN . . . C 2 11.66 22.805 44.178 1 53.27 ? C5A FMN 301 A 1 HETATM 10 C C6 FMN . . . C 2 11.408 21.382 43.9 1 52.66 ? C6 FMN 301 A 1 HETATM 11 C C7 FMN . . . C 2 11.449 20.426 45.013 1 52.87 ? C7 FMN 301 A 1 HETATM 12 C C7M FMN . . . C 2 11.173 18.96 44.656 1 52.43 ? C7M FMN 301 A 1 HETATM 13 C C8 FMN . . . C 2 11.747 20.921 46.397 1 52.07 ? C8 FMN 301 A 1 HETATM 14 C C8M FMN . . . C 2 11.825 20.026 47.678 1 52.22 ? C8M FMN 301 A 1 HETATM 15 C C9 FMN . . . C 2 11.987 22.348 46.594 1 52.14 ? C9 FMN 301 A 1 HETATM 16 C C9A FMN . . . C 2 11.944 23.311 45.479 1 53.42 ? C9A FMN 301 A 1 HETATM 17 N N10 FMN . . . C 2 12.164 24.734 45.561 1 54.19 ? N10 FMN 301 A 1 HETATM 18 C C10 FMN . . . C 2 12.123 25.694 44.441 1 53.83 ? C10 FMN 301 A 1 HETATM 19 C C1' FMN . . . C 2 12.475 25.244 47.002 1 52.52 ? C1' FMN 301 A 1 HETATM 20 C C2' FMN . . . C 2 11.701 26.45 47.603 1 52.96 ? C2' FMN 301 A 1 HETATM 21 O O2' FMN . . . C 2 11.869 27.649 46.846 1 52.01 ? O2' FMN 301 A 1 HETATM 22 C C3' FMN . . . C 2 12.204 26.703 49.033 1 53.29 ? C3' FMN 301 A 1 HETATM 23 O O3' FMN . . . C 2 12.058 25.546 49.852 1 54.5 ? O3' FMN 301 A 1 HETATM 24 C C4' FMN . . . C 2 11.492 27.944 49.647 1 52.7 ? C4' FMN 301 A 1 HETATM 25 O O4' FMN . . . C 2 12.431 29.02 49.548 1 54.57 ? O4' FMN 301 A 1 HETATM 26 C C5' FMN . . . C 2 10.633 28.277 50.969 1 52.02 ? C5' FMN 301 A 1 HETATM 27 O O5' FMN . . . C 2 10.573 29.683 51.168 1 51.32 ? O5' FMN 301 A 1 HETATM 28 P P FMN . . . C 2 9.836 30.424 52.345 1 51.77 ? P FMN 301 A 1 HETATM 29 O O1P FMN . . . C 2 8.415 29.991 52.347 1 54 ? O1P FMN 301 A 1 HETATM 30 O O2P FMN . . . C 2 10.564 30.001 53.558 1 52.7 ? O2P FMN 301 A 1 HETATM 31 O O3P FMN . . . C 2 10.099 31.842 52.055 1 50.05 ? O3P FMN 301 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #