data_1Y3X # _model_server_result.job_id JcOnr3zlg5rIvY2RCCZcIw _model_server_result.datetime_utc '2024-11-01 03:42:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1y3x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":3394}' # _entry.id 1Y3X # _exptl.entry_id 1Y3X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1Y3X _cell.length_a 63.25 _cell.length_b 69.3 _cell.length_c 63.91 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Y3X _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc1 A OE1 GLU 52 A GLU 70 1_555 B CA CA . A CA 3394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc2 A O ASN 54 A ASN 72 1_555 B CA CA . A CA 3394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc3 A O VAL 57 A VAL 75 1_555 B CA CA . A CA 3394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc4 A OE2 GLU 62 A GLU 80 1_555 B CA CA . A CA 3394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc5 B CA CA . A CA 3394 1_555 D O HOH . A HOH 3415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc6 B CA CA . A CA 3394 1_555 D O HOH . A HOH 3424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1Y3X _atom_sites.fract_transf_matrix[1][1] 0.01581 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01443 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015647 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 3394 3394 CA CA . C 3 UIB A 1 1994 1994 UIB UIB . D 4 HOH A 1 3395 1 HOH HOH . D 4 HOH A 2 3396 2 HOH HOH . D 4 HOH A 3 3397 3 HOH HOH . D 4 HOH A 4 3398 4 HOH HOH . D 4 HOH A 5 3399 5 HOH HOH . D 4 HOH A 6 3400 6 HOH HOH . D 4 HOH A 7 3401 7 HOH HOH . D 4 HOH A 8 3402 8 HOH HOH . D 4 HOH A 9 3403 9 HOH HOH . D 4 HOH A 10 3404 10 HOH HOH . D 4 HOH A 11 3405 11 HOH HOH . D 4 HOH A 12 3406 12 HOH HOH . D 4 HOH A 13 3407 13 HOH HOH . D 4 HOH A 14 3408 14 HOH HOH . D 4 HOH A 15 3409 15 HOH HOH . D 4 HOH A 16 3410 16 HOH HOH . D 4 HOH A 17 3411 17 HOH HOH . D 4 HOH A 18 3412 18 HOH HOH . D 4 HOH A 19 3413 19 HOH HOH . D 4 HOH A 20 3414 20 HOH HOH . D 4 HOH A 21 3415 21 HOH HOH . D 4 HOH A 22 3416 22 HOH HOH . D 4 HOH A 23 3417 23 HOH HOH . D 4 HOH A 24 3418 24 HOH HOH . D 4 HOH A 25 3419 25 HOH HOH . D 4 HOH A 26 3420 26 HOH HOH . D 4 HOH A 27 3421 27 HOH HOH . D 4 HOH A 28 3422 28 HOH HOH . D 4 HOH A 29 3423 29 HOH HOH . D 4 HOH A 30 3424 30 HOH HOH . D 4 HOH A 31 3425 31 HOH HOH . D 4 HOH A 32 3426 32 HOH HOH . D 4 HOH A 33 3427 33 HOH HOH . D 4 HOH A 34 3428 34 HOH HOH . D 4 HOH A 35 3429 35 HOH HOH . D 4 HOH A 36 3430 36 HOH HOH . D 4 HOH A 37 3431 37 HOH HOH . D 4 HOH A 38 3432 38 HOH HOH . D 4 HOH A 39 3433 39 HOH HOH . D 4 HOH A 40 3434 40 HOH HOH . D 4 HOH A 41 3435 41 HOH HOH . D 4 HOH A 42 3436 42 HOH HOH . D 4 HOH A 43 3437 43 HOH HOH . D 4 HOH A 44 3438 44 HOH HOH . D 4 HOH A 45 3439 45 HOH HOH . D 4 HOH A 46 3440 46 HOH HOH . D 4 HOH A 47 3441 47 HOH HOH . D 4 HOH A 48 3442 48 HOH HOH . D 4 HOH A 49 3443 49 HOH HOH . D 4 HOH A 50 3444 50 HOH HOH . D 4 HOH A 51 3445 51 HOH HOH . D 4 HOH A 52 3446 52 HOH HOH . D 4 HOH A 53 3447 53 HOH HOH . D 4 HOH A 54 3448 54 HOH HOH . D 4 HOH A 55 3449 55 HOH HOH . D 4 HOH A 56 3450 56 HOH HOH . D 4 HOH A 57 3451 57 HOH HOH . D 4 HOH A 58 3452 58 HOH HOH . D 4 HOH A 59 3453 59 HOH HOH . D 4 HOH A 60 3454 60 HOH HOH . D 4 HOH A 61 3455 61 HOH HOH . D 4 HOH A 62 3456 62 HOH HOH . D 4 HOH A 63 3457 63 HOH HOH . D 4 HOH A 64 3458 64 HOH HOH . D 4 HOH A 65 3459 65 HOH HOH . D 4 HOH A 66 3460 66 HOH HOH . D 4 HOH A 67 3461 67 HOH HOH . D 4 HOH A 68 3462 68 HOH HOH . D 4 HOH A 69 3463 69 HOH HOH . D 4 HOH A 70 3464 70 HOH HOH . D 4 HOH A 71 3465 71 HOH HOH . D 4 HOH A 72 3466 72 HOH HOH . D 4 HOH A 73 3467 73 HOH HOH . D 4 HOH A 74 3468 74 HOH HOH . D 4 HOH A 75 3469 75 HOH HOH . D 4 HOH A 76 3470 76 HOH HOH . D 4 HOH A 77 3471 77 HOH HOH . D 4 HOH A 78 3472 78 HOH HOH . D 4 HOH A 79 3473 79 HOH HOH . D 4 HOH A 80 3474 80 HOH HOH . D 4 HOH A 81 3475 81 HOH HOH . D 4 HOH A 82 3476 82 HOH HOH . D 4 HOH A 83 3477 83 HOH HOH . D 4 HOH A 84 3478 84 HOH HOH . D 4 HOH A 85 3479 85 HOH HOH . D 4 HOH A 86 3480 86 HOH HOH . D 4 HOH A 87 3481 87 HOH HOH . D 4 HOH A 88 3482 88 HOH HOH . D 4 HOH A 89 3483 89 HOH HOH . D 4 HOH A 90 3484 90 HOH HOH . D 4 HOH A 91 3485 91 HOH HOH . D 4 HOH A 92 3486 92 HOH HOH . D 4 HOH A 93 3487 93 HOH HOH . D 4 HOH A 94 3488 94 HOH HOH . D 4 HOH A 95 3489 95 HOH HOH . D 4 HOH A 96 3490 96 HOH HOH . D 4 HOH A 97 3491 97 HOH HOH . D 4 HOH A 98 3492 98 HOH HOH . D 4 HOH A 99 3493 99 HOH HOH . D 4 HOH A 100 3494 100 HOH HOH . D 4 HOH A 101 3495 101 HOH HOH . D 4 HOH A 102 3496 102 HOH HOH . D 4 HOH A 103 3497 103 HOH HOH . D 4 HOH A 104 3498 104 HOH HOH . D 4 HOH A 105 3499 105 HOH HOH . D 4 HOH A 106 3500 106 HOH HOH . D 4 HOH A 107 3501 107 HOH HOH . D 4 HOH A 108 3502 108 HOH HOH . D 4 HOH A 109 3503 109 HOH HOH . D 4 HOH A 110 3504 110 HOH HOH . D 4 HOH A 111 3505 111 HOH HOH . D 4 HOH A 112 3506 112 HOH HOH . D 4 HOH A 113 3507 113 HOH HOH . D 4 HOH A 114 3508 114 HOH HOH . D 4 HOH A 115 3509 115 HOH HOH . D 4 HOH A 116 3510 116 HOH HOH . D 4 HOH A 117 3511 117 HOH HOH . D 4 HOH A 118 3512 118 HOH HOH . D 4 HOH A 119 3513 119 HOH HOH . D 4 HOH A 120 3514 120 HOH HOH . D 4 HOH A 121 3515 121 HOH HOH . D 4 HOH A 122 3516 122 HOH HOH . D 4 HOH A 123 3517 123 HOH HOH . D 4 HOH A 124 3518 124 HOH HOH . D 4 HOH A 125 3519 125 HOH HOH . D 4 HOH A 126 3520 126 HOH HOH . D 4 HOH A 127 3521 127 HOH HOH . D 4 HOH A 128 3522 128 HOH HOH . D 4 HOH A 129 3523 129 HOH HOH . D 4 HOH A 130 3524 130 HOH HOH . D 4 HOH A 131 3525 131 HOH HOH . D 4 HOH A 132 3526 132 HOH HOH . D 4 HOH A 133 3527 133 HOH HOH . D 4 HOH A 134 3528 134 HOH HOH . D 4 HOH A 135 3529 135 HOH HOH . D 4 HOH A 136 3530 136 HOH HOH . D 4 HOH A 137 3531 137 HOH HOH . D 4 HOH A 138 3532 138 HOH HOH . D 4 HOH A 139 3533 139 HOH HOH . D 4 HOH A 140 3534 140 HOH HOH . D 4 HOH A 141 3535 141 HOH HOH . D 4 HOH A 142 3536 142 HOH HOH . D 4 HOH A 143 3537 143 HOH HOH . D 4 HOH A 144 3538 144 HOH HOH . D 4 HOH A 145 3539 145 HOH HOH . D 4 HOH A 146 3540 146 HOH HOH . D 4 HOH A 147 3541 147 HOH HOH . D 4 HOH A 148 3542 148 HOH HOH . D 4 HOH A 149 3543 149 HOH HOH . D 4 HOH A 150 3544 150 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 7.132 _atom_site.Cartn_y -0.422 _atom_site.Cartn_z -0.331 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 15.98 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 3394 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #