data_1Y4I # _model_server_result.job_id J_hvJCx0jpENRgFnOZcDhw _model_server_result.datetime_utc '2024-11-13 03:56:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1y4i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":399}' # _entry.id 1Y4I # _exptl.entry_id 1Y4I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1Y4I _cell.length_a 56.35 _cell.length_b 121.83 _cell.length_c 127.16 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Y4I _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 209 A THR 209 1_555 A N LLP 210 A LLP 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C LLP 210 A LLP 210 1_555 A N TYR 211 A TYR 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.358 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 337 n n S O2 SO4 doub 338 n n S O3 SO4 sing 339 n n S O4 SO4 sing 340 n n # _atom_sites.entry_id 1Y4I _atom_sites.fract_transf_matrix[1][1] 0.017747 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008208 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007864 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 399 1 SO4 SO4 . C 3 HOH A 1 400 1 HOH HOH . C 3 HOH A 2 401 2 HOH HOH . C 3 HOH A 3 402 3 HOH HOH . C 3 HOH A 4 403 4 HOH HOH . C 3 HOH A 5 404 5 HOH HOH . C 3 HOH A 6 405 6 HOH HOH . C 3 HOH A 7 406 7 HOH HOH . C 3 HOH A 8 407 8 HOH HOH . C 3 HOH A 9 408 9 HOH HOH . C 3 HOH A 10 409 10 HOH HOH . C 3 HOH A 11 410 11 HOH HOH . C 3 HOH A 12 411 12 HOH HOH . C 3 HOH A 13 412 13 HOH HOH . C 3 HOH A 14 413 14 HOH HOH . C 3 HOH A 15 414 15 HOH HOH . C 3 HOH A 16 415 16 HOH HOH . C 3 HOH A 17 416 17 HOH HOH . C 3 HOH A 18 417 18 HOH HOH . C 3 HOH A 19 418 19 HOH HOH . C 3 HOH A 20 419 20 HOH HOH . C 3 HOH A 21 420 21 HOH HOH . C 3 HOH A 22 421 22 HOH HOH . C 3 HOH A 23 422 23 HOH HOH . C 3 HOH A 24 423 24 HOH HOH . C 3 HOH A 25 424 25 HOH HOH . C 3 HOH A 26 425 26 HOH HOH . C 3 HOH A 27 426 27 HOH HOH . C 3 HOH A 28 427 28 HOH HOH . C 3 HOH A 29 428 29 HOH HOH . C 3 HOH A 30 429 30 HOH HOH . C 3 HOH A 31 430 31 HOH HOH . C 3 HOH A 32 431 32 HOH HOH . C 3 HOH A 33 432 33 HOH HOH . C 3 HOH A 34 433 34 HOH HOH . C 3 HOH A 35 434 35 HOH HOH . C 3 HOH A 36 435 36 HOH HOH . C 3 HOH A 37 436 37 HOH HOH . C 3 HOH A 38 437 38 HOH HOH . C 3 HOH A 39 438 39 HOH HOH . C 3 HOH A 40 439 40 HOH HOH . C 3 HOH A 41 440 41 HOH HOH . C 3 HOH A 42 441 42 HOH HOH . C 3 HOH A 43 442 43 HOH HOH . C 3 HOH A 44 443 44 HOH HOH . C 3 HOH A 45 444 45 HOH HOH . C 3 HOH A 46 445 46 HOH HOH . C 3 HOH A 47 446 47 HOH HOH . C 3 HOH A 48 447 48 HOH HOH . C 3 HOH A 49 448 49 HOH HOH . C 3 HOH A 50 449 50 HOH HOH . C 3 HOH A 51 450 51 HOH HOH . C 3 HOH A 52 451 52 HOH HOH . C 3 HOH A 53 452 53 HOH HOH . C 3 HOH A 54 453 54 HOH HOH . C 3 HOH A 55 454 55 HOH HOH . C 3 HOH A 56 455 56 HOH HOH . C 3 HOH A 57 456 57 HOH HOH . C 3 HOH A 58 457 58 HOH HOH . C 3 HOH A 59 458 59 HOH HOH . C 3 HOH A 60 459 60 HOH HOH . C 3 HOH A 61 460 61 HOH HOH . C 3 HOH A 62 461 62 HOH HOH . C 3 HOH A 63 462 63 HOH HOH . C 3 HOH A 64 463 64 HOH HOH . C 3 HOH A 65 464 65 HOH HOH . C 3 HOH A 66 465 66 HOH HOH . C 3 HOH A 67 466 67 HOH HOH . C 3 HOH A 68 467 68 HOH HOH . C 3 HOH A 69 468 69 HOH HOH . C 3 HOH A 70 469 70 HOH HOH . C 3 HOH A 71 470 71 HOH HOH . C 3 HOH A 72 471 72 HOH HOH . C 3 HOH A 73 472 73 HOH HOH . C 3 HOH A 74 473 74 HOH HOH . C 3 HOH A 75 474 75 HOH HOH . C 3 HOH A 76 475 76 HOH HOH . C 3 HOH A 77 476 77 HOH HOH . C 3 HOH A 78 477 78 HOH HOH . C 3 HOH A 79 478 79 HOH HOH . C 3 HOH A 80 479 80 HOH HOH . C 3 HOH A 81 480 81 HOH HOH . C 3 HOH A 82 481 82 HOH HOH . C 3 HOH A 83 482 83 HOH HOH . C 3 HOH A 84 483 84 HOH HOH . C 3 HOH A 85 484 85 HOH HOH . C 3 HOH A 86 485 86 HOH HOH . C 3 HOH A 87 486 87 HOH HOH . C 3 HOH A 88 487 88 HOH HOH . C 3 HOH A 89 488 89 HOH HOH . C 3 HOH A 90 489 90 HOH HOH . C 3 HOH A 91 490 91 HOH HOH . C 3 HOH A 92 491 92 HOH HOH . C 3 HOH A 93 492 93 HOH HOH . C 3 HOH A 94 493 94 HOH HOH . C 3 HOH A 95 494 95 HOH HOH . C 3 HOH A 96 495 96 HOH HOH . C 3 HOH A 97 496 97 HOH HOH . C 3 HOH A 98 497 98 HOH HOH . C 3 HOH A 99 498 99 HOH HOH . C 3 HOH A 100 499 100 HOH HOH . C 3 HOH A 101 500 101 HOH HOH . C 3 HOH A 102 501 102 HOH HOH . C 3 HOH A 103 502 103 HOH HOH . C 3 HOH A 104 503 104 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . B 2 39.401 15.714 26.274 1 50.48 ? S SO4 399 A 1 HETATM 2 O O1 SO4 . . . B 2 38.354 14.99 27 1 49 ? O1 SO4 399 A 1 HETATM 3 O O2 SO4 . . . B 2 39.473 17.117 26.713 1 50.16 ? O2 SO4 399 A 1 HETATM 4 O O3 SO4 . . . B 2 40.677 15.064 26.545 1 51.13 ? O3 SO4 399 A 1 HETATM 5 O O4 SO4 . . . B 2 39.101 15.711 24.826 1 49.72 ? O4 SO4 399 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 202 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #