data_1Y4M
#
_model_server_result.job_id            PcFsEBN0A3qp4ZUfQs0QUA 
_model_server_result.datetime_utc      '2024-10-12 14:26:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1y4m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":136}' 
#
_entry.id    1Y4M 
#
_exptl.entry_id    1Y4M 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              35.453 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CHLORIDE ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1Y4M 
_cell.length_a            90.404 
_cell.length_b            90.404 
_cell.length_c            38.654 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1Y4M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        79 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 4' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA dodecameric 12 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G 1 1 
A,B,C,D,E,F,G 2 1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 90.404 90.404 0 
3 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 90.404 0 0 
4 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 90.404 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 41 A CYS 86 1_555 A SG CYS 48 A CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 B SG CYS 41 B CYS 86 1_555 B SG CYS 48 B CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 C SG CYS 41 C CYS 86 1_555 C SG CYS 48 C CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
#
_chem_comp.formula           'Cl -1' 
_chem_comp.formula_weight    35.453 
_chem_comp.id                CL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CHLORIDE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1Y4M 
_atom_sites.fract_transf_matrix[1][1]    0.011061 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011061 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.025871 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 CL A 1 136 36 CL CL . 
E 3 HOH A 1 137 9 HOH TIP . 
E 3 HOH A 2 138 13 HOH TIP . 
E 3 HOH A 3 139 17 HOH TIP . 
E 3 HOH A 4 140 24 HOH TIP . 
E 3 HOH A 5 141 25 HOH TIP . 
E 3 HOH A 6 142 30 HOH TIP . 
E 3 HOH A 7 143 32 HOH TIP . 
E 3 HOH A 8 144 33 HOH TIP . 
E 3 HOH A 9 145 35 HOH TIP . 
E 3 HOH A 10 146 37 HOH TIP . 
E 3 HOH A 11 147 40 HOH TIP . 
E 3 HOH A 12 148 43 HOH TIP . 
E 3 HOH A 13 149 47 HOH TIP . 
E 3 HOH A 14 150 50 HOH TIP . 
E 3 HOH A 15 151 53 HOH TIP . 
E 3 HOH A 16 152 54 HOH TIP . 
E 3 HOH A 17 153 57 HOH TIP . 
E 3 HOH A 18 154 58 HOH TIP . 
E 3 HOH A 19 155 64 HOH TIP . 
E 3 HOH A 20 156 70 HOH TIP . 
E 3 HOH A 21 157 74 HOH TIP . 
E 3 HOH A 22 158 97 HOH TIP . 
E 3 HOH A 23 159 100 HOH TIP . 
E 3 HOH A 24 160 101 HOH TIP . 
F 3 HOH B 1 99 2 HOH TIP . 
F 3 HOH B 2 100 3 HOH TIP . 
F 3 HOH B 3 101 6 HOH TIP . 
F 3 HOH B 4 102 7 HOH TIP . 
F 3 HOH B 5 103 10 HOH TIP . 
F 3 HOH B 6 104 11 HOH TIP . 
F 3 HOH B 7 105 12 HOH TIP . 
F 3 HOH B 8 106 14 HOH TIP . 
F 3 HOH B 9 107 16 HOH TIP . 
F 3 HOH B 10 108 18 HOH TIP . 
F 3 HOH B 11 109 19 HOH TIP . 
F 3 HOH B 12 110 20 HOH TIP . 
F 3 HOH B 13 111 26 HOH TIP . 
F 3 HOH B 14 112 27 HOH TIP . 
F 3 HOH B 15 113 28 HOH TIP . 
F 3 HOH B 16 114 31 HOH TIP . 
F 3 HOH B 17 115 38 HOH TIP . 
F 3 HOH B 18 116 42 HOH TIP . 
F 3 HOH B 19 117 44 HOH TIP . 
F 3 HOH B 20 118 46 HOH TIP . 
F 3 HOH B 21 119 48 HOH TIP . 
F 3 HOH B 22 120 51 HOH TIP . 
F 3 HOH B 23 121 55 HOH TIP . 
F 3 HOH B 24 122 56 HOH TIP . 
F 3 HOH B 25 123 59 HOH TIP . 
F 3 HOH B 26 124 61 HOH TIP . 
F 3 HOH B 27 125 62 HOH TIP . 
F 3 HOH B 28 126 67 HOH TIP . 
F 3 HOH B 29 127 68 HOH TIP . 
F 3 HOH B 30 128 69 HOH TIP . 
F 3 HOH B 31 129 72 HOH TIP . 
F 3 HOH B 32 130 75 HOH TIP . 
F 3 HOH B 33 131 77 HOH TIP . 
F 3 HOH B 34 132 79 HOH TIP . 
F 3 HOH B 35 133 81 HOH TIP . 
F 3 HOH B 36 134 83 HOH TIP . 
F 3 HOH B 37 135 86 HOH TIP . 
F 3 HOH B 38 136 88 HOH TIP . 
F 3 HOH B 39 137 89 HOH TIP . 
F 3 HOH B 40 138 91 HOH TIP . 
F 3 HOH B 41 139 92 HOH TIP . 
F 3 HOH B 42 140 96 HOH TIP . 
F 3 HOH B 43 141 99 HOH TIP . 
G 3 HOH C 1 99 1 HOH TIP . 
G 3 HOH C 2 100 4 HOH TIP . 
G 3 HOH C 3 101 5 HOH TIP . 
G 3 HOH C 4 102 8 HOH TIP . 
G 3 HOH C 5 103 15 HOH TIP . 
G 3 HOH C 6 104 21 HOH TIP . 
G 3 HOH C 7 105 22 HOH TIP . 
G 3 HOH C 8 106 23 HOH TIP . 
G 3 HOH C 9 107 29 HOH TIP . 
G 3 HOH C 10 108 34 HOH TIP . 
G 3 HOH C 11 109 36 HOH TIP . 
G 3 HOH C 12 110 39 HOH TIP . 
G 3 HOH C 13 111 41 HOH TIP . 
G 3 HOH C 14 112 45 HOH TIP . 
G 3 HOH C 15 113 49 HOH TIP . 
G 3 HOH C 16 114 52 HOH TIP . 
G 3 HOH C 17 115 60 HOH TIP . 
G 3 HOH C 18 116 63 HOH TIP . 
G 3 HOH C 19 117 65 HOH TIP . 
G 3 HOH C 20 118 66 HOH TIP . 
G 3 HOH C 21 119 71 HOH TIP . 
G 3 HOH C 22 120 73 HOH TIP . 
G 3 HOH C 23 121 76 HOH TIP . 
G 3 HOH C 24 122 78 HOH TIP . 
G 3 HOH C 25 123 80 HOH TIP . 
G 3 HOH C 26 124 82 HOH TIP . 
G 3 HOH C 27 125 84 HOH TIP . 
G 3 HOH C 28 126 85 HOH TIP . 
G 3 HOH C 29 127 87 HOH TIP . 
G 3 HOH C 30 128 90 HOH TIP . 
G 3 HOH C 31 129 93 HOH TIP . 
G 3 HOH C 32 130 94 HOH TIP . 
G 3 HOH C 33 131 95 HOH TIP . 
G 3 HOH C 34 132 98 HOH TIP . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CL 
_atom_site.label_atom_id         CL 
_atom_site.label_comp_id         CL 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               30.402 
_atom_site.Cartn_y               60.916 
_atom_site.Cartn_z               25.261 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        18.22 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CL 
_atom_site.auth_comp_id          CL 
_atom_site.auth_seq_id           136 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              51 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#