data_1Y54 # _model_server_result.job_id xT9ZyAmFQrbKPWRNUTMGOg _model_server_result.datetime_utc '2024-11-22 23:58:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1y54 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":400}' # _entry.id 1Y54 # _exptl.entry_id 1Y54 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 266.276 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(7R)-6-FORMYL-7-(1-METHYL-1H-1,2,3-TRIAZOL-4-YL)-4,7-DIHYDRO-1,4-THIAZEPINE-3-CARBOXYLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1Y54 _cell.length_a 44.365 _cell.length_b 82.221 _cell.length_c 96.156 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Y54 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 64 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 64 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C3 _struct_conn.ptnr2_label_comp_id FDT _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id FDT _struct_conn.ptnr2_auth_seq_id 400 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.365 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H10 N4 O3 S' _chem_comp.formula_weight 266.276 _chem_comp.id FDT _chem_comp.mon_nstd_flag . _chem_comp.name '(7R)-6-FORMYL-7-(1-METHYL-1H-1,2,3-TRIAZOL-4-YL)-4,7-DIHYDRO-1,4-THIAZEPINE-3-CARBOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '7-(1-METHYL-1,2,3-TRIAZOL-4-YL)-6-FORMYL-2,7-DIHYDRO-[1,4]THIAZEPINE-3-CARBOXYLIC ACID;BRL42715;C6-(N1-METHYL-1,2,3-TRIAZOLYLMETHYLENE)PENEM' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 FDT doub 70 n n C1 N8 FDT sing 71 n n C1 H1 FDT sing 72 n n C2 C3 FDT sing 73 n n C2 C5 FDT sing 74 n n C3 O7 FDT doub 75 n n C3 H3 FDT sing 76 n n C5 S6 FDT sing 77 n n C5 C10 FDT sing 78 n n C5 H5 FDT sing 79 n n S6 C11 FDT sing 80 n n N8 C9 FDT sing 81 n n N8 HN8 FDT sing 82 n n C9 C11 FDT doub 83 n n C9 C12 FDT sing 84 n n C10 C14 FDT doub 85 n y C10 N16 FDT sing 86 n y C11 H11 FDT sing 87 n n C12 O13 FDT sing 88 n n C12 O15 FDT doub 89 n n O13 H13 FDT sing 90 n n C14 N18 FDT sing 91 n y C14 H14 FDT sing 92 n n N16 N17 FDT doub 93 n y N17 N18 FDT sing 94 n y N18 C19 FDT sing 95 n n C19 H191 FDT sing 96 n n C19 H192 FDT sing 97 n n C19 H193 FDT sing 98 n n # _atom_sites.entry_id 1Y54 _atom_sites.fract_transf_matrix[1][1] 0.02254 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012162 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0104 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FDT A 1 400 400 FDT BRL . C 3 HOH A 1 401 401 HOH HOH . C 3 HOH A 2 402 402 HOH HOH . C 3 HOH A 3 403 403 HOH HOH . C 3 HOH A 4 404 404 HOH HOH . C 3 HOH A 5 405 405 HOH HOH . C 3 HOH A 6 406 406 HOH HOH . C 3 HOH A 7 407 407 HOH HOH . C 3 HOH A 8 408 408 HOH HOH . C 3 HOH A 9 409 409 HOH HOH . C 3 HOH A 10 410 410 HOH HOH . C 3 HOH A 11 411 411 HOH HOH . C 3 HOH A 12 412 412 HOH HOH . C 3 HOH A 13 413 413 HOH HOH . C 3 HOH A 14 414 414 HOH HOH . C 3 HOH A 15 415 415 HOH HOH . C 3 HOH A 16 416 416 HOH HOH . C 3 HOH A 17 417 417 HOH HOH . C 3 HOH A 18 418 418 HOH HOH . C 3 HOH A 19 419 419 HOH HOH . C 3 HOH A 20 420 420 HOH HOH . C 3 HOH A 21 421 421 HOH HOH . C 3 HOH A 22 422 422 HOH HOH . C 3 HOH A 23 423 423 HOH HOH . C 3 HOH A 24 424 424 HOH HOH . C 3 HOH A 25 425 425 HOH HOH . C 3 HOH A 26 426 426 HOH HOH . C 3 HOH A 27 427 427 HOH HOH . C 3 HOH A 28 428 428 HOH HOH . C 3 HOH A 29 429 429 HOH HOH . C 3 HOH A 30 430 430 HOH HOH . C 3 HOH A 31 431 431 HOH HOH . C 3 HOH A 32 432 432 HOH HOH . C 3 HOH A 33 433 433 HOH HOH . C 3 HOH A 34 434 434 HOH HOH . C 3 HOH A 35 435 435 HOH HOH . C 3 HOH A 36 436 436 HOH HOH . C 3 HOH A 37 437 437 HOH HOH . C 3 HOH A 38 438 438 HOH HOH . C 3 HOH A 39 439 439 HOH HOH . C 3 HOH A 40 440 440 HOH HOH . C 3 HOH A 41 441 441 HOH HOH . C 3 HOH A 42 442 442 HOH HOH . C 3 HOH A 43 443 443 HOH HOH . C 3 HOH A 44 444 444 HOH HOH . C 3 HOH A 45 445 445 HOH HOH . C 3 HOH A 46 446 446 HOH HOH . C 3 HOH A 47 447 447 HOH HOH . C 3 HOH A 48 448 448 HOH HOH . C 3 HOH A 49 449 449 HOH HOH . C 3 HOH A 50 450 450 HOH HOH . C 3 HOH A 51 451 451 HOH HOH . C 3 HOH A 52 452 452 HOH HOH . C 3 HOH A 53 453 453 HOH HOH . C 3 HOH A 54 454 454 HOH HOH . C 3 HOH A 55 455 455 HOH HOH . C 3 HOH A 56 456 456 HOH HOH . C 3 HOH A 57 457 457 HOH HOH . C 3 HOH A 58 458 458 HOH HOH . C 3 HOH A 59 459 459 HOH HOH . C 3 HOH A 60 460 460 HOH HOH . C 3 HOH A 61 461 461 HOH HOH . C 3 HOH A 62 462 462 HOH HOH . C 3 HOH A 63 463 463 HOH HOH . C 3 HOH A 64 464 464 HOH HOH . C 3 HOH A 65 465 465 HOH HOH . C 3 HOH A 66 466 466 HOH HOH . C 3 HOH A 67 467 467 HOH HOH . C 3 HOH A 68 468 468 HOH HOH . C 3 HOH A 69 469 469 HOH HOH . C 3 HOH A 70 470 470 HOH HOH . C 3 HOH A 71 471 471 HOH HOH . C 3 HOH A 72 472 472 HOH HOH . C 3 HOH A 73 473 473 HOH HOH . C 3 HOH A 74 474 474 HOH HOH . C 3 HOH A 75 475 475 HOH HOH . C 3 HOH A 76 476 476 HOH HOH . C 3 HOH A 77 477 477 HOH HOH . C 3 HOH A 78 478 478 HOH HOH . C 3 HOH A 79 479 479 HOH HOH . C 3 HOH A 80 480 480 HOH HOH . C 3 HOH A 81 481 481 HOH HOH . C 3 HOH A 82 482 482 HOH HOH . C 3 HOH A 83 483 483 HOH HOH . C 3 HOH A 84 484 484 HOH HOH . C 3 HOH A 85 485 485 HOH HOH . C 3 HOH A 86 486 486 HOH HOH . C 3 HOH A 87 487 487 HOH HOH . C 3 HOH A 88 488 488 HOH HOH . C 3 HOH A 89 489 489 HOH HOH . C 3 HOH A 90 490 490 HOH HOH . C 3 HOH A 91 491 491 HOH HOH . C 3 HOH A 92 492 492 HOH HOH . C 3 HOH A 93 493 493 HOH HOH . C 3 HOH A 94 494 494 HOH HOH . C 3 HOH A 95 495 495 HOH HOH . C 3 HOH A 96 496 496 HOH HOH . C 3 HOH A 97 497 497 HOH HOH . C 3 HOH A 98 498 498 HOH HOH . C 3 HOH A 99 499 499 HOH HOH . C 3 HOH A 100 500 500 HOH HOH . C 3 HOH A 101 501 501 HOH HOH . C 3 HOH A 102 502 502 HOH HOH . C 3 HOH A 103 503 503 HOH HOH . C 3 HOH A 104 504 504 HOH HOH . C 3 HOH A 105 505 505 HOH HOH . C 3 HOH A 106 506 506 HOH HOH . C 3 HOH A 107 507 507 HOH HOH . C 3 HOH A 108 508 508 HOH HOH . C 3 HOH A 109 509 509 HOH HOH . C 3 HOH A 110 510 510 HOH HOH . C 3 HOH A 111 511 511 HOH HOH . C 3 HOH A 112 512 512 HOH HOH . C 3 HOH A 113 513 513 HOH HOH . C 3 HOH A 114 514 514 HOH HOH . C 3 HOH A 115 515 515 HOH HOH . C 3 HOH A 116 516 516 HOH HOH . C 3 HOH A 117 517 517 HOH HOH . C 3 HOH A 118 518 518 HOH HOH . C 3 HOH A 119 519 519 HOH HOH . C 3 HOH A 120 520 520 HOH HOH . C 3 HOH A 121 521 521 HOH HOH . C 3 HOH A 122 522 522 HOH HOH . C 3 HOH A 123 523 523 HOH HOH . C 3 HOH A 124 524 524 HOH HOH . C 3 HOH A 125 525 525 HOH HOH . C 3 HOH A 126 526 526 HOH HOH . C 3 HOH A 127 527 527 HOH HOH . C 3 HOH A 128 528 528 HOH HOH . C 3 HOH A 129 529 529 HOH HOH . C 3 HOH A 130 530 530 HOH HOH . C 3 HOH A 131 531 531 HOH HOH . C 3 HOH A 132 532 532 HOH HOH . C 3 HOH A 133 533 533 HOH HOH . C 3 HOH A 134 534 534 HOH HOH . C 3 HOH A 135 535 535 HOH HOH . C 3 HOH A 136 536 536 HOH HOH . C 3 HOH A 137 537 537 HOH HOH . C 3 HOH A 138 538 538 HOH HOH . C 3 HOH A 139 539 539 HOH HOH . C 3 HOH A 140 540 540 HOH HOH . C 3 HOH A 141 541 541 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 FDT . . . B 2 14.026 28.103 22.492 1 40.54 ? C1 FDT 400 A 1 HETATM 2 C C2 FDT . . . B 2 14.115 27.652 23.786 1 36.83 ? C2 FDT 400 A 1 HETATM 3 C C3 FDT . . . B 2 12.978 26.753 23.982 1 32.49 ? C3 FDT 400 A 1 HETATM 4 C C5 FDT . . . B 2 14.908 28.089 24.906 1 39.29 ? C5 FDT 400 A 1 HETATM 5 S S6 FDT . . . B 2 14.66 29.713 25.718 1 46.81 ? S6 FDT 400 A 1 HETATM 6 O O7 FDT . . . B 2 12.228 26.595 23.012 1 25.42 ? O7 FDT 400 A 1 HETATM 7 N N8 FDT . . . B 2 14.971 29.426 22.3 1 45.18 ? N8 FDT 400 A 1 HETATM 8 C C9 FDT . . . B 2 14.604 30.34 23.269 1 48.82 ? C9 FDT 400 A 1 HETATM 9 C C10 FDT . . . B 2 16.429 27.978 24.67 1 40.68 ? C10 FDT 400 A 1 HETATM 10 C C11 FDT . . . B 2 15.369 30.828 24.361 1 48.44 ? C11 FDT 400 A 1 HETATM 11 C C12 FDT . . . B 2 13.212 30.787 23.317 1 52.56 ? C12 FDT 400 A 1 HETATM 12 O O13 FDT . . . B 2 12.409 30.387 22.424 1 65.65 ? O13 FDT 400 A 1 HETATM 13 C C14 FDT . . . B 2 17.12 27.461 23.609 1 42.57 ? C14 FDT 400 A 1 HETATM 14 O O15 FDT . . . B 2 12.855 31.549 24.178 1 58.28 ? O15 FDT 400 A 1 HETATM 15 N N16 FDT . . . B 2 17.271 28.485 25.699 1 41.84 ? N16 FDT 400 A 1 HETATM 16 N N17 FDT . . . B 2 18.489 28.243 25.197 1 42.79 ? N17 FDT 400 A 1 HETATM 17 N N18 FDT . . . B 2 18.497 27.654 23.995 1 42.95 ? N18 FDT 400 A 1 HETATM 18 C C19 FDT . . . B 2 19.623 27.252 23.165 1 42.66 ? C19 FDT 400 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 18 #