data_1Y59 # _model_server_result.job_id '_cmsqSW_G0hapOmU-bJlSQ' _model_server_result.datetime_utc '2024-11-29 21:24:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1y59 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2900}' # _entry.id 1Y59 # _exptl.entry_id 1Y59 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1Y59 _cell.length_a 54.65 _cell.length_b 54.65 _cell.length_c 107.99 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Y59 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 T CYS 22 1_555 A SG CYS 137 T CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf2 A SG CYS 25 T CYS 42 1_555 A SG CYS 41 T CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 A SG CYS 109 T CYS 128 1_555 A SG CYS 210 T CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf4 A SG CYS 116 T CYS 136 1_555 A SG CYS 183 T CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf5 A SG CYS 148 T CYS 168 1_555 A SG CYS 162 T CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf6 A SG CYS 173 T CYS 191 1_555 A SG CYS 197 T CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc1 A OE1 GLU 52 T GLU 70 1_555 B CA CA . T CA 2900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc2 A O ASN 54 T ASN 72 1_555 B CA CA . T CA 2900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc3 A O VAL 57 T VAL 75 1_555 B CA CA . T CA 2900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc4 A OE2 GLU 62 T GLU 80 1_555 B CA CA . T CA 2900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc5 B CA CA . T CA 2900 1_555 I O HOH . T HOH 9005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc6 B CA CA . T CA 2900 1_555 I O HOH . T HOH 9297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1Y59 _atom_sites.fract_transf_matrix[1][1] 0.018298 _atom_sites.fract_transf_matrix[1][2] 0.010565 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021129 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00926 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA T 1 2900 2900 CA CA . C 3 SO4 T 1 3001 3001 SO4 SO4 . D 4 TL1 T 1 350 350 TL1 TL1 . E 5 IMD T 1 5 5 IMD IMD . F 5 IMD T 1 8 8 IMD IMD . G 5 IMD T 1 9 9 IMD IMD . H 6 GOL T 1 1989 1989 GOL GOL . I 7 HOH T 1 9001 9001 HOH HOH . I 7 HOH T 2 9002 9002 HOH HOH . I 7 HOH T 3 9003 9003 HOH HOH . I 7 HOH T 4 9004 9004 HOH HOH . I 7 HOH T 5 9005 9005 HOH HOH . I 7 HOH T 6 9006 9006 HOH HOH . I 7 HOH T 7 9007 9007 HOH HOH . I 7 HOH T 8 9008 9008 HOH HOH . I 7 HOH T 9 9009 9009 HOH HOH . I 7 HOH T 10 9010 9010 HOH HOH . I 7 HOH T 11 9011 9011 HOH HOH . I 7 HOH T 12 9012 9012 HOH HOH . I 7 HOH T 13 9013 9013 HOH HOH . I 7 HOH T 14 9014 9014 HOH HOH . I 7 HOH T 15 9015 9015 HOH HOH . I 7 HOH T 16 9016 9016 HOH HOH . I 7 HOH T 17 9017 9017 HOH HOH . I 7 HOH T 18 9018 9018 HOH HOH . I 7 HOH T 19 9019 9019 HOH HOH . I 7 HOH T 20 9020 9020 HOH HOH . I 7 HOH T 21 9021 9021 HOH HOH . I 7 HOH T 22 9022 9022 HOH HOH . I 7 HOH T 23 9023 9023 HOH HOH . I 7 HOH T 24 9024 9024 HOH HOH . I 7 HOH T 25 9025 9025 HOH HOH . I 7 HOH T 26 9026 9026 HOH HOH . I 7 HOH T 27 9027 9027 HOH HOH . I 7 HOH T 28 9028 9028 HOH HOH . I 7 HOH T 29 9029 9029 HOH HOH . I 7 HOH T 30 9030 9030 HOH HOH . I 7 HOH T 31 9031 9031 HOH HOH . I 7 HOH T 32 9032 9032 HOH HOH . I 7 HOH T 33 9033 9033 HOH HOH . I 7 HOH T 34 9034 9034 HOH HOH . I 7 HOH T 35 9035 9035 HOH HOH . I 7 HOH T 36 9036 9036 HOH HOH . I 7 HOH T 37 9037 9037 HOH HOH . I 7 HOH T 38 9038 9038 HOH HOH . I 7 HOH T 39 9039 9039 HOH HOH . I 7 HOH T 40 9040 9040 HOH HOH . I 7 HOH T 41 9041 9041 HOH HOH . I 7 HOH T 42 9042 9042 HOH HOH . I 7 HOH T 43 9043 9043 HOH HOH . I 7 HOH T 44 9044 9044 HOH HOH . I 7 HOH T 45 9045 9045 HOH HOH . I 7 HOH T 46 9046 9046 HOH HOH . I 7 HOH T 47 9047 9047 HOH HOH . I 7 HOH T 48 9048 9048 HOH HOH . I 7 HOH T 49 9049 9049 HOH HOH . I 7 HOH T 50 9050 9050 HOH HOH . I 7 HOH T 51 9051 9051 HOH HOH . I 7 HOH T 52 9052 9052 HOH HOH . I 7 HOH T 53 9053 9053 HOH HOH . I 7 HOH T 54 9054 9054 HOH HOH . I 7 HOH T 55 9055 9055 HOH HOH . I 7 HOH T 56 9056 9056 HOH HOH . I 7 HOH T 57 9057 9057 HOH HOH . I 7 HOH T 58 9058 9058 HOH HOH . I 7 HOH T 59 9059 9059 HOH HOH . I 7 HOH T 60 9060 9060 HOH HOH . I 7 HOH T 61 9061 9061 HOH HOH . I 7 HOH T 62 9062 9062 HOH HOH . I 7 HOH T 63 9063 9063 HOH HOH . I 7 HOH T 64 9064 9064 HOH HOH . I 7 HOH T 65 9065 9065 HOH HOH . I 7 HOH T 66 9066 9066 HOH HOH . I 7 HOH T 67 9067 9067 HOH HOH . I 7 HOH T 68 9068 9068 HOH HOH . I 7 HOH T 69 9069 9069 HOH HOH . I 7 HOH T 70 9070 9070 HOH HOH . I 7 HOH T 71 9071 9071 HOH HOH . I 7 HOH T 72 9072 9072 HOH HOH . I 7 HOH T 73 9073 9073 HOH HOH . I 7 HOH T 74 9074 9074 HOH HOH . I 7 HOH T 75 9075 9075 HOH HOH . I 7 HOH T 76 9076 9076 HOH HOH . I 7 HOH T 77 9077 9077 HOH HOH . I 7 HOH T 78 9078 9078 HOH HOH . I 7 HOH T 79 9079 9079 HOH HOH . I 7 HOH T 80 9080 9080 HOH HOH . I 7 HOH T 81 9081 9081 HOH HOH . I 7 HOH T 82 9082 9082 HOH HOH . I 7 HOH T 83 9083 9083 HOH HOH . I 7 HOH T 84 9084 9084 HOH HOH . I 7 HOH T 85 9085 9085 HOH HOH . I 7 HOH T 86 9086 9086 HOH HOH . I 7 HOH T 87 9087 9087 HOH HOH . I 7 HOH T 88 9088 9088 HOH HOH . I 7 HOH T 89 9089 9089 HOH HOH . I 7 HOH T 90 9090 9090 HOH HOH . I 7 HOH T 91 9091 9091 HOH HOH . I 7 HOH T 92 9092 9092 HOH HOH . I 7 HOH T 93 9093 9093 HOH HOH . I 7 HOH T 94 9094 9094 HOH HOH . I 7 HOH T 95 9095 9095 HOH HOH . I 7 HOH T 96 9096 9096 HOH HOH . I 7 HOH T 97 9097 9097 HOH HOH . I 7 HOH T 98 9098 9098 HOH HOH . I 7 HOH T 99 9099 9099 HOH HOH . I 7 HOH T 100 9100 9100 HOH HOH . I 7 HOH T 101 9101 9101 HOH HOH . I 7 HOH T 102 9102 9102 HOH HOH . I 7 HOH T 103 9103 9103 HOH HOH . I 7 HOH T 104 9104 9104 HOH HOH . I 7 HOH T 105 9105 9105 HOH HOH . I 7 HOH T 106 9106 9106 HOH HOH . I 7 HOH T 107 9107 9107 HOH HOH . I 7 HOH T 108 9108 9108 HOH HOH . I 7 HOH T 109 9109 9109 HOH HOH . I 7 HOH T 110 9110 9110 HOH HOH . I 7 HOH T 111 9111 9111 HOH HOH . I 7 HOH T 112 9112 9112 HOH HOH . I 7 HOH T 113 9113 9113 HOH HOH . I 7 HOH T 114 9114 9114 HOH HOH . I 7 HOH T 115 9115 9115 HOH HOH . I 7 HOH T 116 9116 9116 HOH HOH . I 7 HOH T 117 9117 9117 HOH HOH . I 7 HOH T 118 9118 9118 HOH HOH . I 7 HOH T 119 9119 9119 HOH HOH . I 7 HOH T 120 9120 9120 HOH HOH . I 7 HOH T 121 9121 9121 HOH HOH . I 7 HOH T 122 9122 9122 HOH HOH . I 7 HOH T 123 9123 9123 HOH HOH . I 7 HOH T 124 9124 9124 HOH HOH . I 7 HOH T 125 9125 9125 HOH HOH . I 7 HOH T 126 9126 9126 HOH HOH . I 7 HOH T 127 9127 9127 HOH HOH . I 7 HOH T 128 9128 9128 HOH HOH . I 7 HOH T 129 9129 9129 HOH HOH . I 7 HOH T 130 9130 9130 HOH HOH . I 7 HOH T 131 9131 9131 HOH HOH . I 7 HOH T 132 9132 9132 HOH HOH . I 7 HOH T 133 9133 9133 HOH HOH . I 7 HOH T 134 9134 9134 HOH HOH . I 7 HOH T 135 9135 9135 HOH HOH . I 7 HOH T 136 9136 9136 HOH HOH . I 7 HOH T 137 9137 9137 HOH HOH . I 7 HOH T 138 9138 9138 HOH HOH . I 7 HOH T 139 9139 9139 HOH HOH . I 7 HOH T 140 9140 9140 HOH HOH . I 7 HOH T 141 9141 9141 HOH HOH . I 7 HOH T 142 9142 9142 HOH HOH . I 7 HOH T 143 9143 9143 HOH HOH . I 7 HOH T 144 9144 9144 HOH HOH . I 7 HOH T 145 9145 9145 HOH HOH . I 7 HOH T 146 9146 9146 HOH HOH . I 7 HOH T 147 9147 9147 HOH HOH . I 7 HOH T 148 9148 9148 HOH HOH . I 7 HOH T 149 9149 9149 HOH HOH . I 7 HOH T 150 9150 9150 HOH HOH . I 7 HOH T 151 9151 9151 HOH HOH . I 7 HOH T 152 9152 9152 HOH HOH . I 7 HOH T 153 9153 9153 HOH HOH . I 7 HOH T 154 9154 9154 HOH HOH . I 7 HOH T 155 9155 9155 HOH HOH . I 7 HOH T 156 9156 9156 HOH HOH . I 7 HOH T 157 9157 9157 HOH HOH . I 7 HOH T 158 9158 9158 HOH HOH . I 7 HOH T 159 9159 9159 HOH HOH . I 7 HOH T 160 9160 9160 HOH HOH . I 7 HOH T 161 9161 9161 HOH HOH . I 7 HOH T 162 9162 9162 HOH HOH . I 7 HOH T 163 9163 9163 HOH HOH . I 7 HOH T 164 9164 9164 HOH HOH . I 7 HOH T 165 9165 9165 HOH HOH . I 7 HOH T 166 9166 9166 HOH HOH . I 7 HOH T 167 9167 9167 HOH HOH . I 7 HOH T 168 9168 9168 HOH HOH . I 7 HOH T 169 9169 9169 HOH HOH . I 7 HOH T 170 9170 9170 HOH HOH . I 7 HOH T 171 9171 9171 HOH HOH . I 7 HOH T 172 9172 9172 HOH HOH . I 7 HOH T 173 9173 9173 HOH HOH . I 7 HOH T 174 9174 9174 HOH HOH . I 7 HOH T 175 9175 9175 HOH HOH . I 7 HOH T 176 9176 9176 HOH HOH . I 7 HOH T 177 9177 9177 HOH HOH . I 7 HOH T 178 9178 9178 HOH HOH . I 7 HOH T 179 9179 9179 HOH HOH . I 7 HOH T 180 9180 9180 HOH HOH . I 7 HOH T 181 9181 9181 HOH HOH . I 7 HOH T 182 9183 9183 HOH HOH . I 7 HOH T 183 9184 9184 HOH HOH . I 7 HOH T 184 9185 9185 HOH HOH . I 7 HOH T 185 9186 9186 HOH HOH . I 7 HOH T 186 9187 9187 HOH HOH . I 7 HOH T 187 9188 9188 HOH HOH . I 7 HOH T 188 9189 9189 HOH HOH . I 7 HOH T 189 9190 9190 HOH HOH . I 7 HOH T 190 9191 9191 HOH HOH . I 7 HOH T 191 9192 9192 HOH HOH . I 7 HOH T 192 9193 9193 HOH HOH . I 7 HOH T 193 9194 9194 HOH HOH . I 7 HOH T 194 9195 9195 HOH HOH . I 7 HOH T 195 9196 9196 HOH HOH . I 7 HOH T 196 9197 9197 HOH HOH . I 7 HOH T 197 9199 9199 HOH HOH . I 7 HOH T 198 9200 9200 HOH HOH . I 7 HOH T 199 9201 9201 HOH HOH . I 7 HOH T 200 9202 9202 HOH HOH . I 7 HOH T 201 9203 9203 HOH HOH . I 7 HOH T 202 9204 9204 HOH HOH . I 7 HOH T 203 9205 9205 HOH HOH . I 7 HOH T 204 9207 9207 HOH HOH . I 7 HOH T 205 9208 9208 HOH HOH . I 7 HOH T 206 9209 9209 HOH HOH . I 7 HOH T 207 9210 9210 HOH HOH . I 7 HOH T 208 9211 9211 HOH HOH . I 7 HOH T 209 9212 9212 HOH HOH . I 7 HOH T 210 9214 9214 HOH HOH . I 7 HOH T 211 9215 9215 HOH HOH . I 7 HOH T 212 9216 9216 HOH HOH . I 7 HOH T 213 9217 9217 HOH HOH . I 7 HOH T 214 9218 9218 HOH HOH . I 7 HOH T 215 9219 9219 HOH HOH . I 7 HOH T 216 9221 9221 HOH HOH . I 7 HOH T 217 9223 9223 HOH HOH . I 7 HOH T 218 9224 9224 HOH HOH . I 7 HOH T 219 9225 9225 HOH HOH . I 7 HOH T 220 9226 9226 HOH HOH . I 7 HOH T 221 9227 9227 HOH HOH . I 7 HOH T 222 9228 9228 HOH HOH . I 7 HOH T 223 9229 9229 HOH HOH . I 7 HOH T 224 9230 9230 HOH HOH . I 7 HOH T 225 9231 9231 HOH HOH . I 7 HOH T 226 9232 9232 HOH HOH . I 7 HOH T 227 9233 9233 HOH HOH . I 7 HOH T 228 9234 9234 HOH HOH . I 7 HOH T 229 9235 9235 HOH HOH . I 7 HOH T 230 9236 9236 HOH HOH . I 7 HOH T 231 9239 9239 HOH HOH . I 7 HOH T 232 9240 9240 HOH HOH . I 7 HOH T 233 9242 9242 HOH HOH . I 7 HOH T 234 9243 9243 HOH HOH . I 7 HOH T 235 9245 9245 HOH HOH . I 7 HOH T 236 9247 9247 HOH HOH . I 7 HOH T 237 9249 9249 HOH HOH . I 7 HOH T 238 9253 9253 HOH HOH . I 7 HOH T 239 9254 9254 HOH HOH . I 7 HOH T 240 9255 9255 HOH HOH . I 7 HOH T 241 9259 9259 HOH HOH . I 7 HOH T 242 9261 9261 HOH HOH . I 7 HOH T 243 9262 9262 HOH HOH . I 7 HOH T 244 9264 9264 HOH HOH . I 7 HOH T 245 9275 9275 HOH HOH . I 7 HOH T 246 9284 9284 HOH HOH . I 7 HOH T 247 9288 9288 HOH HOH . I 7 HOH T 248 9296 9296 HOH HOH . I 7 HOH T 249 9297 9297 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 53.675 _atom_site.Cartn_y 14.657 _atom_site.Cartn_z 30.303 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 10.15 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 2900 _atom_site.auth_asym_id T _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #