data_1Y5R # _model_server_result.job_id KzBGDxd3tRlMQ2vCy6PAWw _model_server_result.datetime_utc '2024-11-21 23:42:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1y5r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":11}' # _entry.id 1Y5R # _exptl.entry_id 1Y5R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 346.461 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CORTICOSTERONE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1Y5R _cell.length_a 96.051 _cell.length_b 96.051 _cell.length_c 218.522 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Y5R _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/4 0 -1 0 -1 0 0 0 0 -1 96.051 96.051 54.6305 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C21 H30 O4' _chem_comp.formula_weight 346.461 _chem_comp.id C0R _chem_comp.mon_nstd_flag . _chem_comp.name CORTICOSTERONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (11-BETA)-11,21-DIHYDROXY-PREGN-4-ENE-3,20-DIONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 C0R sing 70 n n C1 C10 C0R sing 71 n n C1 H11A C0R sing 72 n n C1 H12 C0R sing 73 n n C2 C3 C0R sing 74 n n C2 H21 C0R sing 75 n n C2 H22 C0R sing 76 n n C3 C4 C0R sing 77 n n C3 O1 C0R doub 78 n n C4 C5 C0R doub 79 n n C4 H4 C0R sing 80 n n C5 C6 C0R sing 81 n n C5 C10 C0R sing 82 n n C6 C7 C0R sing 83 n n C6 H61 C0R sing 84 n n C6 H62 C0R sing 85 n n C7 C8 C0R sing 86 n n C7 H71 C0R sing 87 n n C7 H72 C0R sing 88 n n C8 C9 C0R sing 89 n n C8 C14 C0R sing 90 n n C8 H8 C0R sing 91 n n C9 C10 C0R sing 92 n n C9 C11 C0R sing 93 n n C9 H9 C0R sing 94 n n C10 C19 C0R sing 95 n n C11 C12 C0R sing 96 n n C11 O2 C0R sing 97 n n C11 H11 C0R sing 98 n n C12 C13 C0R sing 99 n n C12 H121 C0R sing 100 n n C12 H122 C0R sing 101 n n C13 C14 C0R sing 102 n n C13 C17 C0R sing 103 n n C13 C18 C0R sing 104 n n C14 C15 C0R sing 105 n n C14 H14 C0R sing 106 n n C15 C16 C0R sing 107 n n C15 H151 C0R sing 108 n n C15 H152 C0R sing 109 n n C16 C17 C0R sing 110 n n C16 H161 C0R sing 111 n n C16 H162 C0R sing 112 n n C17 C20 C0R sing 113 n n C17 H17 C0R sing 114 n n C18 H181 C0R sing 115 n n C18 H182 C0R sing 116 n n C18 H183 C0R sing 117 n n C19 H191 C0R sing 118 n n C19 H192 C0R sing 119 n n C19 H193 C0R sing 120 n n C20 C21 C0R sing 121 n n C20 O3 C0R doub 122 n n C21 O4 C0R sing 123 n n C21 H211 C0R sing 124 n n C21 H212 C0R sing 125 n n O2 HO2 C0R sing 126 n n O4 HO4 C0R sing 127 n n # _atom_sites.entry_id 1Y5R _atom_sites.fract_transf_matrix[1][1] 0.010411 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010411 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004576 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 1 1 NDP NDP . D 3 C0R A 1 11 11 C0R C0R . E 2 NDP B 1 2 2 NDP NDP . F 3 C0R B 1 12 12 C0R C0R . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 C0R . . . D 3 73.283 46.769 41.882 1 16.26 ? C1 C0R 11 A 1 HETATM 2 C C2 C0R . . . D 3 71.892 46.17 41.789 1 17.38 ? C2 C0R 11 A 1 HETATM 3 C C3 C0R . . . D 3 71.294 46.263 43.19 1 19.53 ? C3 C0R 11 A 1 HETATM 4 C C4 C0R . . . D 3 71.394 47.515 44.006 1 16.68 ? C4 C0R 11 A 1 HETATM 5 C C5 C0R . . . D 3 72.232 48.563 43.466 1 16.01 ? C5 C0R 11 A 1 HETATM 6 C C6 C0R . . . D 3 72.264 49.923 44.073 1 16.55 ? C6 C0R 11 A 1 HETATM 7 C C7 C0R . . . D 3 73.725 50.255 44.384 1 18.63 ? C7 C0R 11 A 1 HETATM 8 C C8 C0R . . . D 3 74.643 50.142 43.17 1 19.24 ? C8 C0R 11 A 1 HETATM 9 C C9 C0R . . . D 3 74.651 48.678 42.659 1 18.96 ? C9 C0R 11 A 1 HETATM 10 C C10 C0R . . . D 3 73.178 48.251 42.297 1 17.83 ? C10 C0R 11 A 1 HETATM 11 C C11 C0R . . . D 3 75.698 48.389 41.552 1 19.33 ? C11 C0R 11 A 1 HETATM 12 C C12 C0R . . . D 3 77.091 48.827 42.022 1 21.56 ? C12 C0R 11 A 1 HETATM 13 C C13 C0R . . . D 3 77.216 50.291 42.458 1 22.47 ? C13 C0R 11 A 1 HETATM 14 C C14 C0R . . . D 3 76.113 50.305 43.571 1 21.61 ? C14 C0R 11 A 1 HETATM 15 C C15 C0R . . . D 3 76.416 51.628 44.256 1 23.68 ? C15 C0R 11 A 1 HETATM 16 C C16 C0R . . . D 3 77.892 51.851 44.131 1 24.85 ? C16 C0R 11 A 1 HETATM 17 C C17 C0R . . . D 3 78.49 50.696 43.314 1 24.54 ? C17 C0R 11 A 1 HETATM 18 C C18 C0R . . . D 3 76.983 51.354 41.364 1 20.64 ? C18 C0R 11 A 1 HETATM 19 C C19 C0R . . . D 3 72.571 49.061 41.13 1 15.63 ? C19 C0R 11 A 1 HETATM 20 C C20 C0R . . . D 3 79.762 51.138 42.559 1 26.62 ? C20 C0R 11 A 1 HETATM 21 C C21 C0R . . . D 3 80.417 50.032 41.757 1 27.2 ? C21 C0R 11 A 1 HETATM 22 O O1 C0R . . . D 3 70.689 45.313 43.679 1 22.56 ? O1 C0R 11 A 1 HETATM 23 O O2 C0R . . . D 3 75.459 48.969 40.399 1 16.73 ? O2 C0R 11 A 1 HETATM 24 O O3 C0R . . . D 3 80.006 52.284 42.295 1 28.97 ? O3 C0R 11 A 1 HETATM 25 O O4 C0R . . . D 3 80.339 48.864 42.349 1 28.14 ? O4 C0R 11 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #