data_1Y5R # _model_server_result.job_id Neb0z61CsMfsEGGsQk4ZXQ _model_server_result.datetime_utc '2024-11-22 00:25:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1y5r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":12}' # _entry.id 1Y5R # _exptl.entry_id 1Y5R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 346.461 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CORTICOSTERONE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1Y5R _cell.length_a 96.051 _cell.length_b 96.051 _cell.length_c 218.522 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Y5R _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/4 0 -1 0 -1 0 0 0 0 -1 96.051 96.051 54.6305 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C21 H30 O4' _chem_comp.formula_weight 346.461 _chem_comp.id C0R _chem_comp.mon_nstd_flag . _chem_comp.name CORTICOSTERONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (11-BETA)-11,21-DIHYDROXY-PREGN-4-ENE-3,20-DIONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 C0R sing 70 n n C1 C10 C0R sing 71 n n C1 H11A C0R sing 72 n n C1 H12 C0R sing 73 n n C2 C3 C0R sing 74 n n C2 H21 C0R sing 75 n n C2 H22 C0R sing 76 n n C3 C4 C0R sing 77 n n C3 O1 C0R doub 78 n n C4 C5 C0R doub 79 n n C4 H4 C0R sing 80 n n C5 C6 C0R sing 81 n n C5 C10 C0R sing 82 n n C6 C7 C0R sing 83 n n C6 H61 C0R sing 84 n n C6 H62 C0R sing 85 n n C7 C8 C0R sing 86 n n C7 H71 C0R sing 87 n n C7 H72 C0R sing 88 n n C8 C9 C0R sing 89 n n C8 C14 C0R sing 90 n n C8 H8 C0R sing 91 n n C9 C10 C0R sing 92 n n C9 C11 C0R sing 93 n n C9 H9 C0R sing 94 n n C10 C19 C0R sing 95 n n C11 C12 C0R sing 96 n n C11 O2 C0R sing 97 n n C11 H11 C0R sing 98 n n C12 C13 C0R sing 99 n n C12 H121 C0R sing 100 n n C12 H122 C0R sing 101 n n C13 C14 C0R sing 102 n n C13 C17 C0R sing 103 n n C13 C18 C0R sing 104 n n C14 C15 C0R sing 105 n n C14 H14 C0R sing 106 n n C15 C16 C0R sing 107 n n C15 H151 C0R sing 108 n n C15 H152 C0R sing 109 n n C16 C17 C0R sing 110 n n C16 H161 C0R sing 111 n n C16 H162 C0R sing 112 n n C17 C20 C0R sing 113 n n C17 H17 C0R sing 114 n n C18 H181 C0R sing 115 n n C18 H182 C0R sing 116 n n C18 H183 C0R sing 117 n n C19 H191 C0R sing 118 n n C19 H192 C0R sing 119 n n C19 H193 C0R sing 120 n n C20 C21 C0R sing 121 n n C20 O3 C0R doub 122 n n C21 O4 C0R sing 123 n n C21 H211 C0R sing 124 n n C21 H212 C0R sing 125 n n O2 HO2 C0R sing 126 n n O4 HO4 C0R sing 127 n n # _atom_sites.entry_id 1Y5R _atom_sites.fract_transf_matrix[1][1] 0.010411 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010411 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004576 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 1 1 NDP NDP . D 3 C0R A 1 11 11 C0R C0R . E 2 NDP B 1 2 2 NDP NDP . F 3 C0R B 1 12 12 C0R C0R . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 C0R . . . F 3 61.977 55.55 14.58 1 32.23 ? C1 C0R 12 B 1 HETATM 2 C C2 C0R . . . F 3 61.452 54.149 14.81 1 32.08 ? C2 C0R 12 B 1 HETATM 3 C C3 C0R . . . F 3 61.28 53.503 13.444 1 30.83 ? C3 C0R 12 B 1 HETATM 4 C C4 C0R . . . F 3 62.388 53.507 12.504 1 30.68 ? C4 C0R 12 B 1 HETATM 5 C C5 C0R . . . F 3 63.472 54.445 12.765 1 31.63 ? C5 C0R 12 B 1 HETATM 6 C C6 C0R . . . F 3 64.673 54.506 11.844 1 32.7 ? C6 C0R 12 B 1 HETATM 7 C C7 C0R . . . F 3 64.944 55.942 11.433 1 31.7 ? C7 C0R 12 B 1 HETATM 8 C C8 C0R . . . F 3 65.039 56.895 12.62 1 33.05 ? C8 C0R 12 B 1 HETATM 9 C C9 C0R . . . F 3 63.702 56.894 13.402 1 33.04 ? C9 C0R 12 B 1 HETATM 10 C C10 C0R . . . F 3 63.364 55.441 13.917 1 32.41 ? C10 C0R 12 B 1 HETATM 11 C C11 C0R . . . F 3 63.6 57.997 14.495 1 33.3 ? C11 C0R 12 B 1 HETATM 12 C C12 C0R . . . F 3 63.899 59.373 13.875 1 32.92 ? C12 C0R 12 B 1 HETATM 13 C C13 C0R . . . F 3 65.283 59.475 13.217 1 33 ? C13 C0R 12 B 1 HETATM 14 C C14 C0R . . . F 3 65.158 58.352 12.136 1 33.44 ? C14 C0R 12 B 1 HETATM 15 C C15 C0R . . . F 3 66.398 58.604 11.291 1 34.77 ? C15 C0R 12 B 1 HETATM 16 C C16 C0R . . . F 3 66.713 60.054 11.432 1 34.88 ? C16 C0R 12 B 1 HETATM 17 C C17 C0R . . . F 3 65.609 60.693 12.283 1 35.02 ? C17 C0R 12 B 1 HETATM 18 C C18 C0R . . . F 3 66.488 59.311 14.2 1 30.48 ? C18 C0R 12 B 1 HETATM 19 C C19 C0R . . . F 3 64.325 54.901 14.979 1 30.65 ? C19 C0R 12 B 1 HETATM 20 C C20 C0R . . . F 3 66.092 61.994 12.94 1 37.03 ? C20 C0R 12 B 1 HETATM 21 C C21 C0R . . . F 3 65.011 62.811 13.645 1 38.24 ? C21 C0R 12 B 1 HETATM 22 O O1 C0R . . . F 3 60.227 52.965 13.125 1 31.01 ? O1 C0R 12 B 1 HETATM 23 O O2 C0R . . . F 3 64.38 57.777 15.545 1 31.15 ? O2 C0R 12 B 1 HETATM 24 O O3 C0R . . . F 3 67.241 62.146 13.227 1 37.72 ? O3 C0R 12 B 1 HETATM 25 O O4 C0R . . . F 3 63.807 62.794 13.092 1 36.71 ? O4 C0R 12 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 25 #