data_1Y5X # _model_server_result.job_id eLALVha1gYPtFZr2ukAWvg _model_server_result.datetime_utc '2024-11-29 07:17:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1y5x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":400}' # _entry.id 1Y5X # _exptl.entry_id 1Y5X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.11 _cell.angle_gamma 90 _cell.entry_id 1Y5X _cell.length_a 71.11 _cell.length_b 64.21 _cell.length_c 88.08 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Y5X _symmetry.cell_setting ? _symmetry.Int_Tables_number 3 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1,2 B,E,F,H 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -7.845122 0 87.729929 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 317 A CYS 318 1_555 C ZN ZN . A ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc2 A SG CYS 319 A CYS 320 1_555 C ZN ZN . A ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc3 A SG CYS 322 A CYS 323 1_555 C ZN ZN . A ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc4 A ND1 HIS 348 A HIS 349 1_555 C ZN ZN . A ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc5 B SG CYS 317 D CYS 1318 1_555 E ZN ZN . D ZN 1400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc6 B SG CYS 319 D CYS 1320 1_555 E ZN ZN . D ZN 1400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc7 B SG CYS 322 D CYS 1323 1_555 E ZN ZN . D ZN 1400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc8 B ND1 HIS 348 D HIS 1349 1_555 E ZN ZN . D ZN 1400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1Y5X _atom_sites.fract_transf_matrix[1][1] 0.014063 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001258 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015573 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011399 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 400 400 ZN ZN . D 3 E89 A 1 500 500 E89 E89 . E 2 ZN D 1 1400 1400 ZN ZN . F 3 E89 D 1 1500 1500 E89 E89 . G 4 HOH A 1 2003 2003 HOH HOH . G 4 HOH A 2 2007 2007 HOH HOH . G 4 HOH A 3 2008 2008 HOH HOH . G 4 HOH A 4 2009 2009 HOH HOH . G 4 HOH A 5 2010 2010 HOH HOH . G 4 HOH A 6 2012 2012 HOH HOH . G 4 HOH A 7 2014 2014 HOH HOH . G 4 HOH A 8 2020 2020 HOH HOH . G 4 HOH A 9 2023 2023 HOH HOH . G 4 HOH A 10 2024 2024 HOH HOH . G 4 HOH A 11 2028 2028 HOH HOH . G 4 HOH A 12 2029 2029 HOH HOH . G 4 HOH A 13 2030 2030 HOH HOH . G 4 HOH A 14 2033 2033 HOH HOH . G 4 HOH A 15 2034 2034 HOH HOH . G 4 HOH A 16 2035 2035 HOH HOH . G 4 HOH A 17 2037 2037 HOH HOH . G 4 HOH A 18 2038 2038 HOH HOH . G 4 HOH A 19 2040 2040 HOH HOH . G 4 HOH A 20 2044 2044 HOH HOH . G 4 HOH A 21 2045 2045 HOH HOH . G 4 HOH A 22 2047 2047 HOH HOH . G 4 HOH A 23 2050 2050 HOH HOH . G 4 HOH A 24 2051 2051 HOH HOH . G 4 HOH A 25 2053 2053 HOH HOH . G 4 HOH A 26 2055 2055 HOH HOH . G 4 HOH A 27 2056 2056 HOH HOH . G 4 HOH A 28 2060 2060 HOH HOH . G 4 HOH A 29 2062 2062 HOH HOH . G 4 HOH A 30 2064 2064 HOH HOH . G 4 HOH A 31 2065 2065 HOH HOH . G 4 HOH A 32 2066 2066 HOH HOH . G 4 HOH A 33 2069 2069 HOH HOH . G 4 HOH A 34 2070 2070 HOH HOH . G 4 HOH A 35 2073 2073 HOH HOH . G 4 HOH A 36 2074 2074 HOH HOH . G 4 HOH A 37 2079 2079 HOH HOH . G 4 HOH A 38 2082 2082 HOH HOH . G 4 HOH A 39 2083 2083 HOH HOH . G 4 HOH A 40 2085 2085 HOH HOH . G 4 HOH A 41 2086 2086 HOH HOH . G 4 HOH A 42 2087 2087 HOH HOH . G 4 HOH A 43 2088 2088 HOH HOH . G 4 HOH A 44 2089 2089 HOH HOH . G 4 HOH A 45 2090 2090 HOH HOH . G 4 HOH A 46 2091 2091 HOH HOH . G 4 HOH A 47 2092 2092 HOH HOH . G 4 HOH A 48 2093 2093 HOH HOH . G 4 HOH A 49 2095 2095 HOH HOH . G 4 HOH A 50 2097 2097 HOH HOH . G 4 HOH A 51 2098 2098 HOH HOH . G 4 HOH A 52 2099 2099 HOH HOH . G 4 HOH A 53 2100 2100 HOH HOH . G 4 HOH A 54 2101 2101 HOH HOH . G 4 HOH A 55 2102 2102 HOH HOH . G 4 HOH A 56 2103 2103 HOH HOH . G 4 HOH A 57 2104 2104 HOH HOH . G 4 HOH A 58 2106 2106 HOH HOH . G 4 HOH A 59 2111 2111 HOH HOH . G 4 HOH A 60 2112 2112 HOH HOH . G 4 HOH A 61 2114 2114 HOH HOH . G 4 HOH A 62 2117 2117 HOH HOH . G 4 HOH A 63 2122 2122 HOH HOH . G 4 HOH A 64 2124 2124 HOH HOH . G 4 HOH A 65 2125 2125 HOH HOH . G 4 HOH A 66 2126 2126 HOH HOH . G 4 HOH A 67 2127 2127 HOH HOH . G 4 HOH A 68 2128 2128 HOH HOH . G 4 HOH A 69 2131 2131 HOH HOH . G 4 HOH A 70 2132 2132 HOH HOH . G 4 HOH A 71 2133 2133 HOH HOH . G 4 HOH A 72 2134 2134 HOH HOH . G 4 HOH A 73 2135 2135 HOH HOH . G 4 HOH A 74 2137 2137 HOH HOH . G 4 HOH A 75 2138 2138 HOH HOH . G 4 HOH A 76 2141 2141 HOH HOH . G 4 HOH A 77 2142 2142 HOH HOH . G 4 HOH A 78 2144 2144 HOH HOH . G 4 HOH A 79 2146 2146 HOH HOH . G 4 HOH A 80 2147 2147 HOH HOH . G 4 HOH A 81 2148 2148 HOH HOH . G 4 HOH A 82 2149 2149 HOH HOH . G 4 HOH A 83 2150 2150 HOH HOH . G 4 HOH A 84 2151 2151 HOH HOH . G 4 HOH A 85 2152 2152 HOH HOH . G 4 HOH A 86 2153 2153 HOH HOH . G 4 HOH A 87 2154 2154 HOH HOH . G 4 HOH A 88 2156 2156 HOH HOH . G 4 HOH A 89 2159 2159 HOH HOH . G 4 HOH A 90 2161 2161 HOH HOH . G 4 HOH A 91 2162 2162 HOH HOH . G 4 HOH A 92 2164 2164 HOH HOH . G 4 HOH A 93 2165 2165 HOH HOH . G 4 HOH A 94 2168 2168 HOH HOH . G 4 HOH A 95 2169 2169 HOH HOH . G 4 HOH A 96 2171 2171 HOH HOH . G 4 HOH A 97 2173 2173 HOH HOH . G 4 HOH A 98 2177 2177 HOH HOH . G 4 HOH A 99 2179 2179 HOH HOH . G 4 HOH A 100 2180 2180 HOH HOH . G 4 HOH A 101 2184 2184 HOH HOH . G 4 HOH A 102 2185 2185 HOH HOH . G 4 HOH A 103 2186 2186 HOH HOH . G 4 HOH A 104 2187 2187 HOH HOH . G 4 HOH A 105 2188 2188 HOH HOH . G 4 HOH A 106 2189 2189 HOH HOH . G 4 HOH A 107 2190 2190 HOH HOH . G 4 HOH A 108 2192 2192 HOH HOH . G 4 HOH A 109 2193 2193 HOH HOH . G 4 HOH A 110 2194 2194 HOH HOH . G 4 HOH A 111 2195 2195 HOH HOH . G 4 HOH A 112 2198 2198 HOH HOH . G 4 HOH A 113 2201 2201 HOH HOH . G 4 HOH A 114 2202 2202 HOH HOH . G 4 HOH A 115 2203 2203 HOH HOH . G 4 HOH A 116 2204 2204 HOH HOH . G 4 HOH A 117 2205 2205 HOH HOH . G 4 HOH A 118 2206 2206 HOH HOH . G 4 HOH A 119 2213 2213 HOH HOH . G 4 HOH A 120 2214 2214 HOH HOH . G 4 HOH A 121 2215 2215 HOH HOH . G 4 HOH A 122 2217 2217 HOH HOH . G 4 HOH A 123 2218 2218 HOH HOH . G 4 HOH A 124 2219 2219 HOH HOH . G 4 HOH A 125 2223 2223 HOH HOH . G 4 HOH A 126 2226 2226 HOH HOH . G 4 HOH A 127 2228 2228 HOH HOH . G 4 HOH A 128 2229 2229 HOH HOH . G 4 HOH A 129 2231 2231 HOH HOH . G 4 HOH A 130 2232 2232 HOH HOH . G 4 HOH A 131 2234 2234 HOH HOH . G 4 HOH A 132 2235 2235 HOH HOH . G 4 HOH A 133 2237 2237 HOH HOH . G 4 HOH A 134 2239 2239 HOH HOH . G 4 HOH A 135 2240 2240 HOH HOH . G 4 HOH A 136 2242 2242 HOH HOH . H 4 HOH D 1 2001 2001 HOH HOH . H 4 HOH D 2 2002 2002 HOH HOH . H 4 HOH D 3 2004 2004 HOH HOH . H 4 HOH D 4 2005 2005 HOH HOH . H 4 HOH D 5 2006 2006 HOH HOH . H 4 HOH D 6 2011 2011 HOH HOH . H 4 HOH D 7 2013 2013 HOH HOH . H 4 HOH D 8 2015 2015 HOH HOH . H 4 HOH D 9 2016 2016 HOH HOH . H 4 HOH D 10 2017 2017 HOH HOH . H 4 HOH D 11 2018 2018 HOH HOH . H 4 HOH D 12 2019 2019 HOH HOH . H 4 HOH D 13 2021 2021 HOH HOH . H 4 HOH D 14 2022 2022 HOH HOH . H 4 HOH D 15 2025 2025 HOH HOH . H 4 HOH D 16 2026 2026 HOH HOH . H 4 HOH D 17 2027 2027 HOH HOH . H 4 HOH D 18 2031 2031 HOH HOH . H 4 HOH D 19 2032 2032 HOH HOH . H 4 HOH D 20 2036 2036 HOH HOH . H 4 HOH D 21 2039 2039 HOH HOH . H 4 HOH D 22 2041 2041 HOH HOH . H 4 HOH D 23 2042 2042 HOH HOH . H 4 HOH D 24 2043 2043 HOH HOH . H 4 HOH D 25 2046 2046 HOH HOH . H 4 HOH D 26 2048 2048 HOH HOH . H 4 HOH D 27 2049 2049 HOH HOH . H 4 HOH D 28 2052 2052 HOH HOH . H 4 HOH D 29 2054 2054 HOH HOH . H 4 HOH D 30 2057 2057 HOH HOH . H 4 HOH D 31 2058 2058 HOH HOH . H 4 HOH D 32 2059 2059 HOH HOH . H 4 HOH D 33 2061 2061 HOH HOH . H 4 HOH D 34 2063 2063 HOH HOH . H 4 HOH D 35 2067 2067 HOH HOH . H 4 HOH D 36 2068 2068 HOH HOH . H 4 HOH D 37 2071 2071 HOH HOH . H 4 HOH D 38 2072 2072 HOH HOH . H 4 HOH D 39 2075 2075 HOH HOH . H 4 HOH D 40 2076 2076 HOH HOH . H 4 HOH D 41 2077 2077 HOH HOH . H 4 HOH D 42 2078 2078 HOH HOH . H 4 HOH D 43 2080 2080 HOH HOH . H 4 HOH D 44 2081 2081 HOH HOH . H 4 HOH D 45 2084 2084 HOH HOH . H 4 HOH D 46 2094 2094 HOH HOH . H 4 HOH D 47 2096 2096 HOH HOH . H 4 HOH D 48 2105 2105 HOH HOH . H 4 HOH D 49 2107 2107 HOH HOH . H 4 HOH D 50 2108 2108 HOH HOH . H 4 HOH D 51 2109 2109 HOH HOH . H 4 HOH D 52 2110 2110 HOH HOH . H 4 HOH D 53 2113 2113 HOH HOH . H 4 HOH D 54 2115 2115 HOH HOH . H 4 HOH D 55 2116 2116 HOH HOH . H 4 HOH D 56 2118 2118 HOH HOH . H 4 HOH D 57 2119 2119 HOH HOH . H 4 HOH D 58 2120 2120 HOH HOH . H 4 HOH D 59 2121 2121 HOH HOH . H 4 HOH D 60 2123 2123 HOH HOH . H 4 HOH D 61 2129 2129 HOH HOH . H 4 HOH D 62 2130 2130 HOH HOH . H 4 HOH D 63 2136 2136 HOH HOH . H 4 HOH D 64 2139 2139 HOH HOH . H 4 HOH D 65 2140 2140 HOH HOH . H 4 HOH D 66 2143 2143 HOH HOH . H 4 HOH D 67 2145 2145 HOH HOH . H 4 HOH D 68 2155 2155 HOH HOH . H 4 HOH D 69 2157 2157 HOH HOH . H 4 HOH D 70 2158 2158 HOH HOH . H 4 HOH D 71 2160 2160 HOH HOH . H 4 HOH D 72 2163 2163 HOH HOH . H 4 HOH D 73 2166 2166 HOH HOH . H 4 HOH D 74 2167 2167 HOH HOH . H 4 HOH D 75 2170 2170 HOH HOH . H 4 HOH D 76 2172 2172 HOH HOH . H 4 HOH D 77 2174 2174 HOH HOH . H 4 HOH D 78 2175 2175 HOH HOH . H 4 HOH D 79 2176 2176 HOH HOH . H 4 HOH D 80 2178 2178 HOH HOH . H 4 HOH D 81 2181 2181 HOH HOH . H 4 HOH D 82 2182 2182 HOH HOH . H 4 HOH D 83 2183 2183 HOH HOH . H 4 HOH D 84 2191 2191 HOH HOH . H 4 HOH D 85 2196 2196 HOH HOH . H 4 HOH D 86 2197 2197 HOH HOH . H 4 HOH D 87 2199 2199 HOH HOH . H 4 HOH D 88 2200 2200 HOH HOH . H 4 HOH D 89 2207 2207 HOH HOH . H 4 HOH D 90 2208 2208 HOH HOH . H 4 HOH D 91 2209 2209 HOH HOH . H 4 HOH D 92 2210 2210 HOH HOH . H 4 HOH D 93 2211 2211 HOH HOH . H 4 HOH D 94 2212 2212 HOH HOH . H 4 HOH D 95 2216 2216 HOH HOH . H 4 HOH D 96 2220 2220 HOH HOH . H 4 HOH D 97 2221 2221 HOH HOH . H 4 HOH D 98 2222 2222 HOH HOH . H 4 HOH D 99 2224 2224 HOH HOH . H 4 HOH D 100 2225 2225 HOH HOH . H 4 HOH D 101 2227 2227 HOH HOH . H 4 HOH D 102 2230 2230 HOH HOH . H 4 HOH D 103 2233 2233 HOH HOH . H 4 HOH D 104 2236 2236 HOH HOH . H 4 HOH D 105 2238 2238 HOH HOH . H 4 HOH D 106 2241 2241 HOH HOH . H 4 HOH D 107 2243 2243 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x -4.97 _atom_site.Cartn_y 6.555 _atom_site.Cartn_z 13.679 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 27.28 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 400 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 424 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #