data_1Y7F
#
_model_server_result.job_id            34FdZ9vQrtwLAkWSTlSRHQ 
_model_server_result.datetime_utc      '2024-12-26 22:26:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1y7f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":100}' 
#
_entry.id    1Y7F 
#
_exptl.entry_id    1Y7F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              137.327 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'BARIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1Y7F 
_cell.length_a            24.989 
_cell.length_b            44.57 
_cell.length_c            45.115 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1Y7F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A O3' DA 5 A DA 5 1_555 A P 2NT 6 A 2NT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.594 ? 
covale ? covale2 A O3' 2NT 6 A 2NT 6 1_555 A P DA 7 A DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.602 ? 
covale ? covale3 B O3' DA 5 B DA 15 1_555 B P 2NT 6 B 2NT 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.596 ? 
covale ? covale4 B O3' 2NT 6 B 2NT 16 1_555 B P DA 7 B DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.605 ? 
hydrog WATSON-CRICK hydrog1 A N1 DG 1 A DG 1 1_555 B N3 DC 10 B DC 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 A N2 DG 1 A DG 1 1_555 B O2 DC 10 B DC 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 A O6 DG 1 A DG 1 1_555 B N4 DC 10 B DC 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 A N3 DC 2 A DC 2 1_555 B N1 DG 9 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 A N4 DC 2 A DC 2 1_555 B O6 DG 9 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 A O2 DC 2 A DC 2 1_555 B N2 DG 9 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 A N1 DG 3 A DG 3 1_555 B N3 DC 8 B DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 A N2 DG 3 A DG 3 1_555 B O2 DC 8 B DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 A O6 DG 3 A DG 3 1_555 B N4 DC 8 B DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 A N3 DT 4 A DT 4 1_555 B N1 DA 7 B DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 A O4 DT 4 A DT 4 1_555 B N6 DA 7 B DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 A N1 DA 5 A DA 5 1_555 B N3 2NT 6 B 2NT 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 A N6 DA 5 A DA 5 1_555 B O4 2NT 6 B 2NT 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 A N3 2NT 6 A 2NT 6 1_555 B N1 DA 5 B DA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 A O4 2NT 6 A 2NT 6 1_555 B N6 DA 5 B DA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 A N1 DA 7 A DA 7 1_555 B N3 DT 4 B DT 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 A N6 DA 7 A DA 7 1_555 B O4 DT 4 B DT 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog18 A N3 DC 8 A DC 8 1_555 B N1 DG 3 B DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog19 A N4 DC 8 A DC 8 1_555 B O6 DG 3 B DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog20 A O2 DC 8 A DC 8 1_555 B N2 DG 3 B DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog21 A N1 DG 9 A DG 9 1_555 B N3 DC 2 B DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog22 A N2 DG 9 A DG 9 1_555 B O2 DC 2 B DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog23 A O6 DG 9 A DG 9 1_555 B N4 DC 2 B DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog24 A N3 DC 10 A DC 10 1_555 B N1 DG 1 B DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog25 A N4 DC 10 A DC 10 1_555 B O6 DG 1 B DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog26 A O2 DC 10 A DC 10 1_555 B N2 DG 1 B DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'Ba 2' 
_chem_comp.formula_weight    137.327 
_chem_comp.id                BA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'BARIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1Y7F 
_atom_sites.fract_transf_matrix[1][1]    0.040018 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.022437 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.022166 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 BA A 1 100 100 BA BA . 
D 3 HOH A 1 102 102 HOH HOH . 
D 3 HOH A 2 103 103 HOH HOH . 
D 3 HOH A 3 104 104 HOH HOH . 
D 3 HOH A 4 106 106 HOH HOH . 
D 3 HOH A 5 108 108 HOH HOH . 
D 3 HOH A 6 110 110 HOH HOH . 
D 3 HOH A 7 111 111 HOH HOH . 
D 3 HOH A 8 112 112 HOH HOH . 
D 3 HOH A 9 114 114 HOH HOH . 
D 3 HOH A 10 115 115 HOH HOH . 
D 3 HOH A 11 118 118 HOH HOH . 
D 3 HOH A 12 120 120 HOH HOH . 
D 3 HOH A 13 122 122 HOH HOH . 
D 3 HOH A 14 123 123 HOH HOH . 
D 3 HOH A 15 124 124 HOH HOH . 
D 3 HOH A 16 125 125 HOH HOH . 
D 3 HOH A 17 127 127 HOH HOH . 
D 3 HOH A 18 128 128 HOH HOH . 
D 3 HOH A 19 129 129 HOH HOH . 
D 3 HOH A 20 130 130 HOH HOH . 
D 3 HOH A 21 135 135 HOH HOH . 
D 3 HOH A 22 136 136 HOH HOH . 
D 3 HOH A 23 137 137 HOH HOH . 
D 3 HOH A 24 138 138 HOH HOH . 
D 3 HOH A 25 145 145 HOH HOH . 
D 3 HOH A 26 146 146 HOH HOH . 
D 3 HOH A 27 148 148 HOH HOH . 
D 3 HOH A 28 149 149 HOH HOH . 
D 3 HOH A 29 154 154 HOH HOH . 
D 3 HOH A 30 156 156 HOH HOH . 
D 3 HOH A 31 158 158 HOH HOH . 
D 3 HOH A 32 162 162 HOH HOH . 
D 3 HOH A 33 163 163 HOH HOH . 
D 3 HOH A 34 167 167 HOH HOH . 
D 3 HOH A 35 171 171 HOH HOH . 
D 3 HOH A 36 172 172 HOH HOH . 
D 3 HOH A 37 173 173 HOH HOH . 
D 3 HOH A 38 174 174 HOH HOH . 
D 3 HOH A 39 175 175 HOH HOH . 
D 3 HOH A 40 176 176 HOH HOH . 
D 3 HOH A 41 177 177 HOH HOH . 
D 3 HOH A 42 178 178 HOH HOH . 
D 3 HOH A 43 180 180 HOH HOH . 
D 3 HOH A 44 181 181 HOH HOH . 
D 3 HOH A 45 182 182 HOH HOH . 
D 3 HOH A 46 183 183 HOH HOH . 
D 3 HOH A 47 187 187 HOH HOH . 
D 3 HOH A 48 188 188 HOH HOH . 
D 3 HOH A 49 190 190 HOH HOH . 
D 3 HOH A 50 192 192 HOH HOH . 
D 3 HOH A 51 193 193 HOH HOH . 
D 3 HOH A 52 198 198 HOH HOH . 
D 3 HOH A 53 200 200 HOH HOH . 
D 3 HOH A 54 201 201 HOH HOH . 
D 3 HOH A 55 202 202 HOH HOH . 
D 3 HOH A 56 203 203 HOH HOH . 
D 3 HOH A 57 208 208 HOH HOH . 
D 3 HOH A 58 209 209 HOH HOH . 
D 3 HOH A 59 210 210 HOH HOH . 
D 3 HOH A 60 211 211 HOH HOH . 
D 3 HOH A 61 212 212 HOH HOH . 
D 3 HOH A 62 213 213 HOH HOH . 
E 3 HOH B 1 101 101 HOH HOH . 
E 3 HOH B 2 105 105 HOH HOH . 
E 3 HOH B 3 107 107 HOH HOH . 
E 3 HOH B 4 109 109 HOH HOH . 
E 3 HOH B 5 113 113 HOH HOH . 
E 3 HOH B 6 116 116 HOH HOH . 
E 3 HOH B 7 117 117 HOH HOH . 
E 3 HOH B 8 119 119 HOH HOH . 
E 3 HOH B 9 121 121 HOH HOH . 
E 3 HOH B 10 126 126 HOH HOH . 
E 3 HOH B 11 131 131 HOH HOH . 
E 3 HOH B 12 132 132 HOH HOH . 
E 3 HOH B 13 133 133 HOH HOH . 
E 3 HOH B 14 134 134 HOH HOH . 
E 3 HOH B 15 139 139 HOH HOH . 
E 3 HOH B 16 140 140 HOH HOH . 
E 3 HOH B 17 141 141 HOH HOH . 
E 3 HOH B 18 142 142 HOH HOH . 
E 3 HOH B 19 143 143 HOH HOH . 
E 3 HOH B 20 144 144 HOH HOH . 
E 3 HOH B 21 147 147 HOH HOH . 
E 3 HOH B 22 150 150 HOH HOH . 
E 3 HOH B 23 151 151 HOH HOH . 
E 3 HOH B 24 152 152 HOH HOH . 
E 3 HOH B 25 153 153 HOH HOH . 
E 3 HOH B 26 155 155 HOH HOH . 
E 3 HOH B 27 157 157 HOH HOH . 
E 3 HOH B 28 159 159 HOH HOH . 
E 3 HOH B 29 160 160 HOH HOH . 
E 3 HOH B 30 161 161 HOH HOH . 
E 3 HOH B 31 164 164 HOH HOH . 
E 3 HOH B 32 165 165 HOH HOH . 
E 3 HOH B 33 166 166 HOH HOH . 
E 3 HOH B 34 168 168 HOH HOH . 
E 3 HOH B 35 169 169 HOH HOH . 
E 3 HOH B 36 170 170 HOH HOH . 
E 3 HOH B 37 179 179 HOH HOH . 
E 3 HOH B 38 184 184 HOH HOH . 
E 3 HOH B 39 185 185 HOH HOH . 
E 3 HOH B 40 186 186 HOH HOH . 
E 3 HOH B 41 189 189 HOH HOH . 
E 3 HOH B 42 191 191 HOH HOH . 
E 3 HOH B 43 194 194 HOH HOH . 
E 3 HOH B 44 195 195 HOH HOH . 
E 3 HOH B 45 196 196 HOH HOH . 
E 3 HOH B 46 197 197 HOH HOH . 
E 3 HOH B 47 199 199 HOH HOH . 
E 3 HOH B 48 204 204 HOH HOH . 
E 3 HOH B 49 205 205 HOH HOH . 
E 3 HOH B 50 206 206 HOH HOH . 
E 3 HOH B 51 207 207 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           BA 
_atom_site.label_atom_id         BA 
_atom_site.label_comp_id         BA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -0.767 
_atom_site.Cartn_y               -0.98 
_atom_site.Cartn_z               10.839 
_atom_site.occupancy             0.6 
_atom_site.B_iso_or_equiv        23.86 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          BA 
_atom_site.auth_comp_id          BA 
_atom_site.auth_seq_id           100 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              57 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#