data_1Y7M # _model_server_result.job_id XLlTFgNy6lM3s9o88s9QqQ _model_server_result.datetime_utc '2024-12-08 03:40:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1y7m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 1Y7M # _exptl.entry_id 1Y7M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1Y7M _cell.length_a 56.276 _cell.length_b 63.91 _cell.length_c 93.679 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Y7M _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 1 A MSE 1 1_555 A N LEU 2 A LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale2 A C VAL 75 A VAL 75 1_555 A N MSE 76 A MSE 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 A C MSE 76 A MSE 76 1_555 A N LYS 77 A LYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C ARG 141 A ARG 141 1_555 A N MSE 142 A MSE 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale5 A C MSE 142 A MSE 142 1_555 A N HIS 143 A HIS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale6 B C MSE 1 B MSE 1 1_555 B N LEU 2 B LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale7 B C VAL 75 B VAL 75 1_555 B N MSE 76 B MSE 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale8 B C MSE 76 B MSE 76 1_555 B N LYS 77 B LYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale9 B C ARG 141 B ARG 141 1_555 B N MSE 142 B MSE 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale10 B C MSE 142 B MSE 142 1_555 B N HIS 143 B HIS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 A NE2 HIS 119 A HIS 119 4_455 E CD CD . B CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc2 A SG CYS 139 A CYS 139 1_555 C CD CD . A CD 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc3 C CD CD . A CD 201 1_555 D O4 SO4 . A SO4 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? metalc ? metalc4 C CD CD . A CD 201 1_555 D O2 SO4 . A SO4 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? metalc ? metalc5 C CD CD . A CD 201 1_555 D S SO4 . A SO4 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.141 ? metalc ? metalc6 C CD CD . A CD 201 1_555 I O HOH . A HOH 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? metalc ? metalc7 C CD CD . A CD 201 1_555 B NE2 HIS 119 B HIS 119 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc8 B SG CYS 139 B CYS 139 1_555 E CD CD . B CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc9 E CD CD . B CD 202 1_555 F S SO4 . B SO4 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.115 ? metalc ? metalc10 E CD CD . B CD 202 1_555 F O3 SO4 . B SO4 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc11 E CD CD . B CD 202 1_555 F O1 SO4 . B SO4 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? metalc ? metalc12 E CD CD . B CD 202 1_555 J O HOH . B HOH 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 309 n n S O2 SO4 doub 310 n n S O3 SO4 sing 311 n n S O4 SO4 sing 312 n n # _atom_sites.entry_id 1Y7M _atom_sites.fract_transf_matrix[1][1] 0.01777 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015647 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010675 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CD A 1 201 1 CD CD . D 3 SO4 A 1 203 3 SO4 SO4 . E 2 CD B 1 202 2 CD CD . F 3 SO4 B 1 204 4 SO4 SO4 . G 3 SO4 B 1 205 5 SO4 SO4 . H 3 SO4 B 1 206 6 SO4 SO4 . I 4 HOH A 1 204 2 HOH HOH . I 4 HOH A 2 205 4 HOH HOH . I 4 HOH A 3 206 5 HOH HOH . I 4 HOH A 4 207 6 HOH HOH . I 4 HOH A 5 208 7 HOH HOH . I 4 HOH A 6 209 9 HOH HOH . I 4 HOH A 7 210 11 HOH HOH . I 4 HOH A 8 211 17 HOH HOH . I 4 HOH A 9 212 21 HOH HOH . I 4 HOH A 10 213 23 HOH HOH . I 4 HOH A 11 214 27 HOH HOH . I 4 HOH A 12 215 29 HOH HOH . I 4 HOH A 13 216 30 HOH HOH . I 4 HOH A 14 217 32 HOH HOH . I 4 HOH A 15 218 33 HOH HOH . I 4 HOH A 16 219 37 HOH HOH . I 4 HOH A 17 220 38 HOH HOH . I 4 HOH A 18 221 40 HOH HOH . I 4 HOH A 19 222 43 HOH HOH . I 4 HOH A 20 223 45 HOH HOH . I 4 HOH A 21 224 51 HOH HOH . I 4 HOH A 22 225 52 HOH HOH . I 4 HOH A 23 226 55 HOH HOH . I 4 HOH A 24 227 57 HOH HOH . I 4 HOH A 25 228 58 HOH HOH . I 4 HOH A 26 229 60 HOH HOH . I 4 HOH A 27 230 62 HOH HOH . I 4 HOH A 28 231 63 HOH HOH . I 4 HOH A 29 232 64 HOH HOH . I 4 HOH A 30 233 65 HOH HOH . I 4 HOH A 31 234 68 HOH HOH . I 4 HOH A 32 235 70 HOH HOH . I 4 HOH A 33 236 74 HOH HOH . I 4 HOH A 34 237 75 HOH HOH . I 4 HOH A 35 238 76 HOH HOH . I 4 HOH A 36 239 78 HOH HOH . I 4 HOH A 37 240 79 HOH HOH . I 4 HOH A 38 241 86 HOH HOH . I 4 HOH A 39 242 90 HOH HOH . I 4 HOH A 40 243 98 HOH HOH . I 4 HOH A 41 244 99 HOH HOH . I 4 HOH A 42 245 102 HOH HOH . I 4 HOH A 43 246 103 HOH HOH . I 4 HOH A 44 247 105 HOH HOH . I 4 HOH A 45 248 107 HOH HOH . I 4 HOH A 46 249 109 HOH HOH . I 4 HOH A 47 250 111 HOH HOH . I 4 HOH A 48 251 114 HOH HOH . I 4 HOH A 49 252 115 HOH HOH . I 4 HOH A 50 253 117 HOH HOH . I 4 HOH A 51 254 118 HOH HOH . I 4 HOH A 52 255 122 HOH HOH . I 4 HOH A 53 256 125 HOH HOH . I 4 HOH A 54 257 128 HOH HOH . I 4 HOH A 55 258 131 HOH HOH . I 4 HOH A 56 259 134 HOH HOH . I 4 HOH A 57 260 137 HOH HOH . I 4 HOH A 58 261 140 HOH HOH . I 4 HOH A 59 262 141 HOH HOH . I 4 HOH A 60 263 143 HOH HOH . I 4 HOH A 61 264 144 HOH HOH . I 4 HOH A 62 265 146 HOH HOH . I 4 HOH A 63 266 148 HOH HOH . I 4 HOH A 64 267 159 HOH HOH . I 4 HOH A 65 268 160 HOH HOH . I 4 HOH A 66 269 163 HOH HOH . I 4 HOH A 67 270 165 HOH HOH . I 4 HOH A 68 271 169 HOH HOH . J 4 HOH B 1 207 1 HOH HOH . J 4 HOH B 2 208 3 HOH HOH . J 4 HOH B 3 209 8 HOH HOH . J 4 HOH B 4 210 10 HOH HOH . J 4 HOH B 5 211 12 HOH HOH . J 4 HOH B 6 212 13 HOH HOH . J 4 HOH B 7 213 14 HOH HOH . J 4 HOH B 8 214 15 HOH HOH . J 4 HOH B 9 215 16 HOH HOH . J 4 HOH B 10 216 18 HOH HOH . J 4 HOH B 11 217 19 HOH HOH . J 4 HOH B 12 218 20 HOH HOH . J 4 HOH B 13 219 22 HOH HOH . J 4 HOH B 14 220 24 HOH HOH . J 4 HOH B 15 221 25 HOH HOH . J 4 HOH B 16 222 26 HOH HOH . J 4 HOH B 17 223 28 HOH HOH . J 4 HOH B 18 224 31 HOH HOH . J 4 HOH B 19 225 34 HOH HOH . J 4 HOH B 20 226 35 HOH HOH . J 4 HOH B 21 227 36 HOH HOH . J 4 HOH B 22 228 39 HOH HOH . J 4 HOH B 23 229 41 HOH HOH . J 4 HOH B 24 230 42 HOH HOH . J 4 HOH B 25 231 44 HOH HOH . J 4 HOH B 26 232 46 HOH HOH . J 4 HOH B 27 233 47 HOH HOH . J 4 HOH B 28 234 48 HOH HOH . J 4 HOH B 29 235 49 HOH HOH . J 4 HOH B 30 236 50 HOH HOH . J 4 HOH B 31 237 53 HOH HOH . J 4 HOH B 32 238 54 HOH HOH . J 4 HOH B 33 239 56 HOH HOH . J 4 HOH B 34 240 59 HOH HOH . J 4 HOH B 35 241 61 HOH HOH . J 4 HOH B 36 242 66 HOH HOH . J 4 HOH B 37 243 67 HOH HOH . J 4 HOH B 38 244 69 HOH HOH . J 4 HOH B 39 245 71 HOH HOH . J 4 HOH B 40 246 72 HOH HOH . J 4 HOH B 41 247 73 HOH HOH . J 4 HOH B 42 248 77 HOH HOH . J 4 HOH B 43 249 81 HOH HOH . J 4 HOH B 44 250 82 HOH HOH . J 4 HOH B 45 251 83 HOH HOH . J 4 HOH B 46 252 84 HOH HOH . J 4 HOH B 47 253 85 HOH HOH . J 4 HOH B 48 254 87 HOH HOH . J 4 HOH B 49 255 88 HOH HOH . J 4 HOH B 50 256 89 HOH HOH . J 4 HOH B 51 257 91 HOH HOH . J 4 HOH B 52 258 92 HOH HOH . J 4 HOH B 53 259 93 HOH HOH . J 4 HOH B 54 260 94 HOH HOH . J 4 HOH B 55 261 95 HOH HOH . J 4 HOH B 56 262 96 HOH HOH . J 4 HOH B 57 263 97 HOH HOH . J 4 HOH B 58 264 100 HOH HOH . J 4 HOH B 59 265 101 HOH HOH . J 4 HOH B 60 266 104 HOH HOH . J 4 HOH B 61 267 106 HOH HOH . J 4 HOH B 62 268 108 HOH HOH . J 4 HOH B 63 269 110 HOH HOH . J 4 HOH B 64 270 112 HOH HOH . J 4 HOH B 65 271 113 HOH HOH . J 4 HOH B 66 272 116 HOH HOH . J 4 HOH B 67 273 119 HOH HOH . J 4 HOH B 68 274 120 HOH HOH . J 4 HOH B 69 275 121 HOH HOH . J 4 HOH B 70 276 123 HOH HOH . J 4 HOH B 71 277 124 HOH HOH . J 4 HOH B 72 278 126 HOH HOH . J 4 HOH B 73 279 129 HOH HOH . J 4 HOH B 74 280 130 HOH HOH . J 4 HOH B 75 281 133 HOH HOH . J 4 HOH B 76 282 136 HOH HOH . J 4 HOH B 77 283 138 HOH HOH . J 4 HOH B 78 284 139 HOH HOH . J 4 HOH B 79 285 142 HOH HOH . J 4 HOH B 80 286 145 HOH HOH . J 4 HOH B 81 287 147 HOH HOH . J 4 HOH B 82 288 150 HOH HOH . J 4 HOH B 83 289 151 HOH HOH . J 4 HOH B 84 290 153 HOH HOH . J 4 HOH B 85 291 157 HOH HOH . J 4 HOH B 86 292 161 HOH HOH . J 4 HOH B 87 293 166 HOH HOH . J 4 HOH B 88 294 167 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . D 3 66.77 35.562 -1.028 1 27.19 ? S SO4 203 A 1 HETATM 2 O O1 SO4 . . . D 3 66.597 36.226 -2.305 1 27.65 ? O1 SO4 203 A 1 HETATM 3 O O2 SO4 . . . D 3 66.662 34.125 -1.34 1 25.05 ? O2 SO4 203 A 1 HETATM 4 O O3 SO4 . . . D 3 65.716 36.017 -0.121 1 29.8 ? O3 SO4 203 A 1 HETATM 5 O O4 SO4 . . . D 3 68.058 35.886 -0.427 1 32.58 ? O4 SO4 203 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #