data_1Y81
#
_model_server_result.job_id            wGi5yf4P12CL0aZiDXlHjA 
_model_server_result.datetime_utc      '2025-02-23 02:24:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1y81 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    1Y81 
#
_exptl.entry_id    1Y81 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              767.534 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'COENZYME A' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1Y81 
_cell.length_a            79.146 
_cell.length_b            79.146 
_cell.length_c            36.402 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1Y81 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        171 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 62' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 124 A CYS 116 1_555 C S1P COA . A COA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
covale ? covale2 A C ILE 125 A ILE 117 1_555 A N MSE 126 A MSE 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? 
covale ? covale3 A C MSE 126 A MSE 118 1_555 A N VAL 127 A VAL 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
#
_chem_comp.formula           'C21 H36 N7 O16 P3 S' 
_chem_comp.formula_weight    767.534 
_chem_comp.id                COA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'COENZYME A' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1A C2A COA sing 70 n y 
N1A C6A COA doub 71 n y 
C2A N3A COA doub 72 n y 
C2A H2A COA sing 73 n n 
N3A C4A COA sing 74 n y 
C4A C5A COA doub 75 n y 
C4A N9A COA sing 76 n y 
C5A C6A COA sing 77 n y 
C5A N7A COA sing 78 n y 
C6A N6A COA sing 79 n n 
N6A H61A COA sing 80 n n 
N6A H62A COA sing 81 n n 
N7A C8A COA doub 82 n y 
C8A N9A COA sing 83 n y 
C8A H8A COA sing 84 n n 
N9A C1B COA sing 85 n n 
C1B C2B COA sing 86 n n 
C1B O4B COA sing 87 n n 
C1B H1B COA sing 88 n n 
C2B O2B COA sing 89 n n 
C2B C3B COA sing 90 n n 
C2B H2B COA sing 91 n n 
O2B HO2A COA sing 92 n n 
C3B O3B COA sing 93 n n 
C3B C4B COA sing 94 n n 
C3B H3B COA sing 95 n n 
O3B P3B COA sing 96 n n 
P3B O7A COA doub 97 n n 
P3B O8A COA sing 98 n n 
P3B O9A COA sing 99 n n 
O8A HOA8 COA sing 100 n n 
O9A HOA9 COA sing 101 n n 
C4B O4B COA sing 102 n n 
C4B C5B COA sing 103 n n 
C4B H4B COA sing 104 n n 
C5B O5B COA sing 105 n n 
C5B H51A COA sing 106 n n 
C5B H52A COA sing 107 n n 
O5B P1A COA sing 108 n n 
P1A O1A COA doub 109 n n 
P1A O2A COA sing 110 n n 
P1A O3A COA sing 111 n n 
O2A HOA2 COA sing 112 n n 
O3A P2A COA sing 113 n n 
P2A O4A COA doub 114 n n 
P2A O5A COA sing 115 n n 
P2A O6A COA sing 116 n n 
O5A HOA5 COA sing 117 n n 
O6A CCP COA sing 118 n n 
CBP CCP COA sing 119 n n 
CBP CDP COA sing 120 n n 
CBP CEP COA sing 121 n n 
CBP CAP COA sing 122 n n 
CCP H121 COA sing 123 n n 
CCP H122 COA sing 124 n n 
CDP H131 COA sing 125 n n 
CDP H132 COA sing 126 n n 
CDP H133 COA sing 127 n n 
CEP H141 COA sing 128 n n 
CEP H142 COA sing 129 n n 
CEP H143 COA sing 130 n n 
CAP OAP COA sing 131 n n 
CAP C9P COA sing 132 n n 
CAP H10 COA sing 133 n n 
OAP HO1 COA sing 134 n n 
C9P O9P COA doub 135 n n 
C9P N8P COA sing 136 n n 
N8P C7P COA sing 137 n n 
N8P HN8 COA sing 138 n n 
C7P C6P COA sing 139 n n 
C7P H71 COA sing 140 n n 
C7P H72 COA sing 141 n n 
C6P C5P COA sing 142 n n 
C6P H61 COA sing 143 n n 
C6P H62 COA sing 144 n n 
C5P O5P COA doub 145 n n 
C5P N4P COA sing 146 n n 
N4P C3P COA sing 147 n n 
N4P HN4 COA sing 148 n n 
C3P C2P COA sing 149 n n 
C3P H31 COA sing 150 n n 
C3P H32 COA sing 151 n n 
C2P S1P COA sing 152 n n 
C2P H21 COA sing 153 n n 
C2P H22 COA sing 154 n n 
S1P HS1 COA sing 155 n n 
#
_atom_sites.entry_id                     1Y81 
_atom_sites.fract_transf_matrix[1][1]    0.012635 
_atom_sites.fract_transf_matrix[1][2]    0.007295 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014589 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.027471 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SCN A 1 202 202 SCN SCN . 
C 3 COA A 1 201 201 COA COA . 
D 4 UNX A 1 401 401 UNX UNX . 
E 4 UNX A 1 402 402 UNX UNX . 
F 4 UNX A 1 403 403 UNX UNX . 
G 4 UNX A 1 404 404 UNX UNX . 
H 4 UNX A 1 405 405 UNX UNX . 
I 4 UNX A 1 406 406 UNX UNX . 
J 4 UNX A 1 407 407 UNX UNX . 
K 4 UNX A 1 408 408 UNX UNX . 
L 5 HOH A 1 301 301 HOH HOH . 
L 5 HOH A 2 302 302 HOH HOH . 
L 5 HOH A 3 303 303 HOH HOH . 
L 5 HOH A 4 304 304 HOH HOH . 
L 5 HOH A 5 305 305 HOH HOH . 
L 5 HOH A 6 306 306 HOH HOH . 
L 5 HOH A 7 307 307 HOH HOH . 
L 5 HOH A 8 308 308 HOH HOH . 
L 5 HOH A 9 309 309 HOH HOH . 
L 5 HOH A 10 310 310 HOH HOH . 
L 5 HOH A 11 311 311 HOH HOH . 
L 5 HOH A 12 312 312 HOH HOH . 
L 5 HOH A 13 313 313 HOH HOH . 
L 5 HOH A 14 314 314 HOH HOH . 
L 5 HOH A 15 315 315 HOH HOH . 
L 5 HOH A 16 316 316 HOH HOH . 
L 5 HOH A 17 317 317 HOH HOH . 
L 5 HOH A 18 318 318 HOH HOH . 
L 5 HOH A 19 319 319 HOH HOH . 
L 5 HOH A 20 320 320 HOH HOH . 
L 5 HOH A 21 321 321 HOH HOH . 
L 5 HOH A 22 322 322 HOH HOH . 
L 5 HOH A 23 323 323 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1A COA . . . C 3 47.263 13.125 18.727 1 18.32 ? N1A COA 201 A 1 
HETATM 2 C C2A COA . . . C 3 46.528 12.977 17.578 1 17.31 ? C2A COA 201 A 1 
HETATM 3 N N3A COA . . . C 3 45.676 13.973 17.169 1 14.96 ? N3A COA 201 A 1 
HETATM 4 C C4A COA . . . C 3 45.53 15.092 17.927 1 15.94 ? C4A COA 201 A 1 
HETATM 5 C C5A COA . . . C 3 46.258 15.27 19.101 1 17.29 ? C5A COA 201 A 1 
HETATM 6 C C6A COA . . . C 3 47.136 14.274 19.505 1 19.66 ? C6A COA 201 A 1 
HETATM 7 N N6A COA . . . C 3 47.834 14.413 20.622 1 19.49 ? N6A COA 201 A 1 
HETATM 8 N N7A COA . . . C 3 45.927 16.48 19.617 1 18.08 ? N7A COA 201 A 1 
HETATM 9 C C8A COA . . . C 3 45.019 17.059 18.792 1 17.54 ? C8A COA 201 A 1 
HETATM 10 N N9A COA . . . C 3 44.766 16.207 17.752 1 16.98 ? N9A COA 201 A 1 
HETATM 11 C C1B COA . . . C 3 43.82 16.382 16.628 1 16.79 ? C1B COA 201 A 1 
HETATM 12 C C2B COA . . . C 3 42.753 17.442 16.903 1 17.03 ? C2B COA 201 A 1 
HETATM 13 O O2B COA . . . C 3 41.794 17.058 17.92 1 18.72 ? O2B COA 201 A 1 
HETATM 14 C C3B COA . . . C 3 42.216 17.593 15.474 1 16.95 ? C3B COA 201 A 1 
HETATM 15 O O3B COA . . . C 3 41.277 16.593 15.126 1 18.74 ? O3B COA 201 A 1 
HETATM 16 P P3B COA . . . C 3 39.687 16.796 15.408 1 25.34 ? P3B COA 201 A 1 
HETATM 17 O O7A COA . . . C 3 39.111 15.556 16.026 1 29.01 ? O7A COA 201 A 1 
HETATM 18 O O8A COA . . . C 3 39.068 17.081 14.086 1 29.16 ? O8A COA 201 A 1 
HETATM 19 O O9A COA . . . C 3 39.529 17.879 16.431 1 31.38 ? O9A COA 201 A 1 
HETATM 20 C C4B COA . . . C 3 43.443 17.38 14.577 1 17.71 ? C4B COA 201 A 1 
HETATM 21 O O4B COA . . . C 3 44.431 16.743 15.403 1 18.31 ? O4B COA 201 A 1 
HETATM 22 C C5B COA . . . C 3 43.995 18.69 13.981 1 16.03 ? C5B COA 201 A 1 
HETATM 23 O O5B COA . . . C 3 44.286 19.564 15.052 1 18.5 ? O5B COA 201 A 1 
HETATM 24 P P1A COA . . . C 3 43.671 21.051 15.105 1 21.62 ? P1A COA 201 A 1 
HETATM 25 O O1A COA . . . C 3 43.976 21.679 16.443 1 21.13 ? O1A COA 201 A 1 
HETATM 26 O O2A COA . . . C 3 42.205 21.01 14.735 1 21.65 ? O2A COA 201 A 1 
HETATM 27 O O3A COA . . . C 3 44.572 21.757 13.973 1 21.33 ? O3A COA 201 A 1 
HETATM 28 P P2A COA . . . C 3 44.032 22.325 12.572 1 23.41 ? P2A COA 201 A 1 
HETATM 29 O O4A COA . . . C 3 43.123 23.503 12.814 1 26.8 ? O4A COA 201 A 1 
HETATM 30 O O5A COA . . . C 3 43.397 21.321 11.681 1 22.45 ? O5A COA 201 A 1 
HETATM 31 O O6A COA . . . C 3 45.383 22.811 11.871 1 22.76 ? O6A COA 201 A 1 
HETATM 32 C CBP COA . . . C 3 47.703 22.674 11.25 1 20.65 ? CBP COA 201 A 1 
HETATM 33 C CCP COA . . . C 3 46.4 21.889 11.522 1 21.85 ? CCP COA 201 A 1 
HETATM 34 C CDP COA . . . C 3 48.785 21.644 10.9 1 22.95 ? CDP COA 201 A 1 
HETATM 35 C CEP COA . . . C 3 48.136 23.407 12.517 1 23.8 ? CEP COA 201 A 1 
HETATM 36 C CAP COA . . . C 3 47.494 23.707 10.119 1 19.81 ? CAP COA 201 A 1 
HETATM 37 O OAP COA . . . C 3 48.655 24.502 9.948 1 18.61 ? OAP COA 201 A 1 
HETATM 38 C C9P COA . . . C 3 47.201 22.92 8.873 1 22.34 ? C9P COA 201 A 1 
HETATM 39 O O9P COA . . . C 3 45.871 22.664 8.546 1 22.58 ? O9P COA 201 A 1 
HETATM 40 N N8P COA . . . C 3 48.261 22.468 8.189 1 24.98 ? N8P COA 201 A 1 
HETATM 41 C C7P COA . . . C 3 48.208 21.606 7.016 1 22.28 ? C7P COA 201 A 1 
HETATM 42 C C6P COA . . . C 3 47.897 22.307 5.749 1 21.93 ? C6P COA 201 A 1 
HETATM 43 C C5P COA . . . C 3 47.969 21.298 4.638 1 21.76 ? C5P COA 201 A 1 
HETATM 44 O O5P COA . . . C 3 48.011 20.062 4.842 1 21.22 ? O5P COA 201 A 1 
HETATM 45 N N4P COA . . . C 3 47.962 21.887 3.471 1 20.58 ? N4P COA 201 A 1 
HETATM 46 C C3P COA . . . C 3 48.02 21.248 2.197 1 18.71 ? C3P COA 201 A 1 
HETATM 47 C C2P COA . . . C 3 49.18 21.816 1.379 1 20.15 ? C2P COA 201 A 1 
HETATM 48 S S1P COA . . . C 3 50.778 21.425 2.166 1 20.5 ? S1P COA 201 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           431 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           48 
#