data_1Y8O # _model_server_result.job_id JD_wolaM0qCKHzZICj3lVg _model_server_result.datetime_utc '2024-11-05 16:23:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1y8o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":503}' # _entry.id 1Y8O # _exptl.entry_id 1Y8O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 39.098 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'POTASSIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1Y8O _cell.length_a 120.752 _cell.length_b 120.752 _cell.length_c 239.153 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Y8O _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_455 -x+y-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -120.752 0 119.5765 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 33 A SER 20 1_555 E K K . A K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc2 A O PHE 35 A PHE 22 1_555 E K K . A K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc3 A OD1 ASN 72 A ASN 59 1_555 E K K . A K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? metalc ? metalc4 A OD1 ASN 264 A ASN 251 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? metalc ? metalc5 A O LEU 313 A LEU 300 1_555 D K K . A K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? metalc ? metalc6 A O ASN 315 A ASN 302 1_555 D K K . A K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.325 ? metalc ? metalc7 A O SER 319 A SER 306 1_555 D K K . A K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.323 ? metalc ? metalc8 A O GLY 338 A GLY 325 1_555 D K K . A K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.813 ? metalc ? metalc9 A O PHE 385 A PHE 372 1_555 E K K . A K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc10 C MG MG . A MG 501 1_555 F O2A ADP . A ADP 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc11 C MG MG . A MG 501 1_555 F O3B ADP . A ADP 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc12 C MG MG . A MG 501 1_555 H O HOH . A HOH 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc13 D K K . A K 502 1_555 F O1A ADP . A ADP 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.799 ? # _chem_comp.formula 'K 1' _chem_comp.formula_weight 39.098 _chem_comp.id K _chem_comp.mon_nstd_flag . _chem_comp.name 'POTASSIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1Y8O _atom_sites.fract_transf_matrix[1][1] 0.008281 _atom_sites.fract_transf_matrix[1][2] 0.004781 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009563 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004181 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 501 1 MG MG . D 4 K A 1 502 2 K K . E 4 K A 1 503 3 K K . F 5 ADP A 1 504 1 ADP ADP . G 6 RED B 1 373 173 RED LPA . H 7 HOH A 1 505 1 HOH WAT . H 7 HOH A 2 506 2 HOH WAT . H 7 HOH A 3 507 3 HOH WAT . H 7 HOH A 4 508 4 HOH WAT . H 7 HOH A 5 509 5 HOH WAT . H 7 HOH A 6 510 6 HOH WAT . H 7 HOH A 7 511 7 HOH WAT . H 7 HOH A 8 512 8 HOH WAT . H 7 HOH A 9 513 9 HOH WAT . H 7 HOH A 10 514 10 HOH WAT . H 7 HOH A 11 515 11 HOH WAT . H 7 HOH A 12 516 12 HOH WAT . H 7 HOH A 13 517 13 HOH WAT . H 7 HOH A 14 518 14 HOH WAT . H 7 HOH A 15 519 15 HOH WAT . H 7 HOH A 16 520 16 HOH WAT . H 7 HOH A 17 521 17 HOH WAT . H 7 HOH A 18 522 18 HOH WAT . H 7 HOH A 19 523 19 HOH WAT . H 7 HOH A 20 524 20 HOH WAT . H 7 HOH A 21 525 21 HOH WAT . H 7 HOH A 22 526 22 HOH WAT . H 7 HOH A 23 527 23 HOH WAT . H 7 HOH A 24 528 24 HOH WAT . H 7 HOH A 25 529 25 HOH WAT . H 7 HOH A 26 530 26 HOH WAT . H 7 HOH A 27 531 27 HOH WAT . H 7 HOH A 28 532 28 HOH WAT . H 7 HOH A 29 533 29 HOH WAT . H 7 HOH A 30 534 30 HOH WAT . H 7 HOH A 31 535 31 HOH WAT . H 7 HOH A 32 536 32 HOH WAT . H 7 HOH A 33 537 33 HOH WAT . H 7 HOH A 34 538 34 HOH WAT . H 7 HOH A 35 539 35 HOH WAT . H 7 HOH A 36 540 36 HOH WAT . H 7 HOH A 37 541 37 HOH WAT . H 7 HOH A 38 542 38 HOH WAT . H 7 HOH A 39 543 39 HOH WAT . H 7 HOH A 40 544 40 HOH WAT . H 7 HOH A 41 545 41 HOH WAT . H 7 HOH A 42 546 42 HOH WAT . H 7 HOH A 43 547 43 HOH WAT . H 7 HOH A 44 548 44 HOH WAT . H 7 HOH A 45 549 45 HOH WAT . H 7 HOH A 46 550 46 HOH WAT . H 7 HOH A 47 551 47 HOH WAT . H 7 HOH A 48 552 48 HOH WAT . H 7 HOH A 49 553 49 HOH WAT . H 7 HOH A 50 554 50 HOH WAT . H 7 HOH A 51 555 51 HOH WAT . H 7 HOH A 52 556 52 HOH WAT . H 7 HOH A 53 557 53 HOH WAT . H 7 HOH A 54 558 54 HOH WAT . H 7 HOH A 55 559 55 HOH WAT . H 7 HOH A 56 560 56 HOH WAT . H 7 HOH A 57 561 58 HOH WAT . H 7 HOH A 58 562 59 HOH WAT . H 7 HOH A 59 563 62 HOH WAT . H 7 HOH A 60 564 63 HOH WAT . H 7 HOH A 61 565 64 HOH WAT . H 7 HOH A 62 566 65 HOH WAT . H 7 HOH A 63 567 68 HOH WAT . I 7 HOH B 1 57 57 HOH WAT . I 7 HOH B 2 60 60 HOH WAT . I 7 HOH B 3 61 61 HOH WAT . I 7 HOH B 4 67 67 HOH WAT . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol K _atom_site.label_atom_id K _atom_site.label_comp_id K _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x -67.658 _atom_site.Cartn_y -8.467 _atom_site.Cartn_z 77.458 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 65.79 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id K _atom_site.auth_comp_id K _atom_site.auth_seq_id 503 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #