data_1Y9H # _model_server_result.job_id -uai0dOWsEQMD4D-abjcxA _model_server_result.datetime_utc '2025-03-06 03:26:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1y9h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":23}' # _entry.id 1Y9H # _exptl.entry_id 1Y9H _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 304.339 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2,3-TRIHYDROXY-1,2,3,4-TETRAHYDROBENZO[A]PYRENE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' DT 4 A DT 4 1_555 A P 5CM 5 A 5CM 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.59 ? covale ? covale2 A O3' 5CM 5 A 5CM 5 1_555 A P DG 6 A DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.606 ? covale ? covale3 A N2 DG 6 A DG 6 1_555 C C4' BAP . A BAP 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.488 ? hydrog 'DC-DG PAIR' hydrog1 A N3 DC 1 A DC 1 1_555 B N1 DG 11 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N3 DC 2 A DC 2 1_555 B N1 DG 10 B DG 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N4 DC 2 A DC 2 1_555 B O6 DG 10 B DG 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A O2 DC 2 A DC 2 1_555 B N2 DG 10 B DG 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N1 DA 3 A DA 3 1_555 B N3 DT 9 B DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N6 DA 3 A DA 3 1_555 B O4 DT 9 B DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 DT 4 A DT 4 1_555 B N1 DA 8 B DA 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O4 DT 4 A DT 4 1_555 B N6 DA 8 B DA 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N3 5CM 5 A 5CM 5 1_555 B N1 DG 7 B DG 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N4 5CM 5 A 5CM 5 1_555 B O6 DG 7 B DG 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A O2 5CM 5 A 5CM 5 1_555 B N2 DG 7 B DG 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N3 DC 7 A DC 7 1_555 B N1 DG 5 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N4 DC 7 A DC 7 1_555 B O6 DG 5 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A O2 DC 7 A DC 7 1_555 B N2 DG 5 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N3 DT 8 A DT 8 1_555 B N1 DA 4 B DA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A O4 DT 8 A DT 8 1_555 B N6 DA 4 B DA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N1 DA 9 A DA 9 1_555 B N3 DT 3 B DT 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N6 DA 9 A DA 9 1_555 B O4 DT 3 B DT 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N3 DC 10 A DC 10 1_555 B N1 DG 2 B DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N4 DC 10 A DC 10 1_555 B O6 DG 2 B DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A O2 DC 10 A DC 10 1_555 B N2 DG 2 B DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N3 DC 11 A DC 11 1_555 B N1 DG 1 B DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N4 DC 11 A DC 11 1_555 B O6 DG 1 B DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A O2 DC 11 A DC 11 1_555 B N2 DG 1 B DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C20 H16 O3' _chem_comp.formula_weight 304.339 _chem_comp.id BAP _chem_comp.mon_nstd_flag . _chem_comp.name 1,2,3-TRIHYDROXY-1,2,3,4-TETRAHYDROBENZO[A]PYRENE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BAP doub 39 n y C1 C1A BAP sing 40 n y C1 H1 BAP sing 41 n n C2 C3 BAP sing 42 n y C2 H2 BAP sing 43 n n C3 C3A BAP doub 44 n y C3 H3 BAP sing 45 n n C3A C4 BAP sing 46 n y C3A C3B BAP sing 47 n y C4 C5 BAP doub 48 n y C4 H4 BAP sing 49 n n C5 C5A BAP sing 50 n y C5 H5 BAP sing 51 n n C5A C6 BAP doub 52 n y C5A C5B BAP sing 53 n y C6 C7 BAP sing 54 n y C6 C4' BAP sing 55 n n C7 C8 BAP doub 56 n y C7 C1' BAP sing 57 n n C8 C8A BAP sing 58 n y C8 H8 BAP sing 59 n n C8A C9 BAP doub 60 n y C8A C5B BAP sing 61 n y C9 C10 BAP sing 62 n y C9 H9 BAP sing 63 n n C10 C1A BAP doub 64 n y C10 H10 BAP sing 65 n n C1A C3B BAP sing 66 n y C3B C5B BAP doub 67 n y C1' O1' BAP sing 68 n n C1' C2' BAP sing 69 n n C1' H1' BAP sing 70 n n O1' HO1 BAP sing 71 n n C2' O2' BAP sing 72 n n C2' C3' BAP sing 73 n n C2' H2' BAP sing 74 n n O2' HO2 BAP sing 75 n n C3' O3' BAP sing 76 n n C3' C4' BAP sing 77 n n C3' H3' BAP sing 78 n n O3' HO3 BAP sing 79 n n C4' "H4'1" BAP sing 80 n n C4' "H4'2" BAP sing 81 n n # _atom_sites.entry_id 1Y9H _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id BAP _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 23 _pdbx_nonpoly_scheme.auth_seq_num 23 _pdbx_nonpoly_scheme.pdb_mon_id BAP _pdbx_nonpoly_scheme.auth_mon_id BP _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BAP . . . C 3 6.446 -1.368 -15.816 1 0 ? C1 BAP 23 A 1 HETATM 2 C C2 BAP . . . C 3 7.669 -2.073 -15.734 1 0 ? C2 BAP 23 A 1 HETATM 3 C C3 BAP . . . C 3 7.681 -3.446 -15.404 1 0 ? C3 BAP 23 A 1 HETATM 4 C C3A BAP . . . C 3 6.467 -4.116 -15.156 1 0 ? C3A BAP 23 A 1 HETATM 5 C C4 BAP . . . C 3 6.481 -5.482 -14.826 1 0 ? C4 BAP 23 A 1 HETATM 6 C C5 BAP . . . C 3 5.265 -6.149 -14.588 1 0 ? C5 BAP 23 A 1 HETATM 7 C C5A BAP . . . C 3 4.009 -5.491 -14.653 1 0 ? C5A BAP 23 A 1 HETATM 8 C C6 BAP . . . C 3 2.771 -6.16 -14.403 1 0 ? C6 BAP 23 A 1 HETATM 9 C C7 BAP . . . C 3 1.543 -5.424 -14.494 1 0 ? C7 BAP 23 A 1 HETATM 10 C C8 BAP . . . C 3 1.57 -4.054 -14.833 1 0 ? C8 BAP 23 A 1 HETATM 11 C C8A BAP . . . C 3 2.784 -3.387 -15.075 1 0 ? C8A BAP 23 A 1 HETATM 12 C C9 BAP . . . C 3 2.783 -2.015 -15.401 1 0 ? C9 BAP 23 A 1 HETATM 13 C C10 BAP . . . C 3 3.999 -1.341 -15.646 1 0 ? C10 BAP 23 A 1 HETATM 14 C C1A BAP . . . C 3 5.226 -2.034 -15.566 1 0 ? C1A BAP 23 A 1 HETATM 15 C C3B BAP . . . C 3 5.231 -3.418 -15.235 1 0 ? C3B BAP 23 A 1 HETATM 16 C C5B BAP . . . C 3 4.007 -4.104 -14.987 1 0 ? C5B BAP 23 A 1 HETATM 17 C C1' BAP . . . C 3 0.255 -6.044 -14.27 1 0 ? C1' BAP 23 A 1 HETATM 18 O O1' BAP . . . C 3 -0.718 -5.14 -13.678 1 0 ? O1' BAP 23 A 1 HETATM 19 C C2' BAP . . . C 3 0.326 -7.306 -13.37 1 0 ? C2' BAP 23 A 1 HETATM 20 O O2' BAP . . . C 3 -1.019 -7.831 -13.337 1 0 ? O2' BAP 23 A 1 HETATM 21 C C3' BAP . . . C 3 1.356 -8.254 -14.046 1 0 ? C3' BAP 23 A 1 HETATM 22 O O3' BAP . . . C 3 0.75 -8.538 -15.314 1 0 ? O3' BAP 23 A 1 HETATM 23 C C4' BAP . . . C 3 2.755 -7.57 -14.046 1 0 ? C4' BAP 23 A 1 HETATM 24 H H1 BAP . . . C 3 6.447 -0.318 -16.069 1 0 ? H1 BAP 23 A 1 HETATM 25 H H2 BAP . . . C 3 8.601 -1.561 -15.921 1 0 ? H2 BAP 23 A 1 HETATM 26 H H3 BAP . . . C 3 8.615 -3.986 -15.338 1 0 ? H3 BAP 23 A 1 HETATM 27 H H4 BAP . . . C 3 7.419 -6.013 -14.76 1 0 ? H4 BAP 23 A 1 HETATM 28 H H5 BAP . . . C 3 5.306 -7.2 -14.34 1 0 ? H5 BAP 23 A 1 HETATM 29 H H8 BAP . . . C 3 0.632 -3.523 -14.899 1 0 ? H8 BAP 23 A 1 HETATM 30 H H9 BAP . . . C 3 1.847 -1.479 -15.467 1 0 ? H9 BAP 23 A 1 HETATM 31 H H10 BAP . . . C 3 3.99 -0.29 -15.896 1 0 ? H10 BAP 23 A 1 HETATM 32 H H1' BAP . . . C 3 0.078 -6.495 -15.257 1 0 ? H1' BAP 23 A 1 HETATM 33 H HO1 BAP . . . C 3 -0.314 -4.614 -12.984 1 0 ? HO1 BAP 23 A 1 HETATM 34 H H2' BAP . . . C 3 0.748 -7.191 -12.36 1 0 ? H2' BAP 23 A 1 HETATM 35 H HO2 BAP . . . C 3 -1.184 -8.286 -14.165 1 0 ? HO2 BAP 23 A 1 HETATM 36 H H3' BAP . . . C 3 1.622 -9.146 -13.461 1 0 ? H3' BAP 23 A 1 HETATM 37 H HO3 BAP . . . C 3 1.381 -8.544 -16.038 1 0 ? HO3 BAP 23 A 1 HETATM 38 H "H4'2" BAP . . . C 3 3.494 -8.203 -14.56 1 0 ? "H4'2" BAP 23 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 2215 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 38 #