data_1Y9Q
#
_model_server_result.job_id            p7M_deGO1lRW5SMBAX-tfg 
_model_server_result.datetime_utc      '2024-11-27 07:59:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1y9q 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    1Y9Q 
#
_exptl.entry_id    1Y9Q 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              149.211 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            D-METHIONINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1Y9Q 
_cell.length_a            79.226 
_cell.length_b            79.226 
_cell.length_c            49.849 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1Y9Q 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_765 -x+2,-x+y+1,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 118.839 68.611729 16.616333 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C VAL 6 A VAL 6 1_555 A N MSE 7 A MSE 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale2 A C MSE 7 A MSE 7 1_555 A N PHE 8 A PHE 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale3 A C ALA 39 A ALA 39 1_555 A N MSE 40 A MSE 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale4 A C MSE 40 A MSE 40 1_555 A N LEU 41 A LEU 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale5 A C ASN 89 A ASN 89 1_555 A N MSE 90 A MSE 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale6 A C MSE 90 A MSE 90 1_555 A N LYS 91 A LYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale7 A C GLN 117 A GLN 117 1_555 A N MSE 118 A MSE 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale8 A C MSE 118 A MSE 118 1_555 A N SER 119 A SER 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale9 A C ILE 136 A ILE 136 1_555 A N MSE 137 A MSE 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale10 A C MSE 137 A MSE 137 1_555 A N LYS 138 A LYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
metalc ? metalc1 A NE2 HIS 122 A HIS 122 1_555 B ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? 
metalc ? metalc2 A OE2 GLU 128 A GLU 128 1_555 B ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
metalc ? metalc3 A NE2 HIS 162 A HIS 162 1_555 B ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? 
metalc ? metalc4 A OH TYR 164 A TYR 164 1_555 B ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? 
metalc ? metalc5 C N MED . A MED 201 1_555 B ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? 
metalc ? metalc6 C O MED . A MED 201 1_555 B ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
#
_chem_comp.formula           'C5 H11 N O2 S' 
_chem_comp.formula_weight    149.211 
_chem_comp.id                MED 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              D-METHIONINE 
_chem_comp.type              'd-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA MED sing 205 n n 
N H MED sing 206 n n 
N H2 MED sing 207 n n 
CA C MED sing 208 n n 
CA CB MED sing 209 n n 
CA HA MED sing 210 n n 
C O MED doub 211 n n 
C OXT MED sing 212 n n 
CB CG MED sing 213 n n 
CB HB2 MED sing 214 n n 
CB HB3 MED sing 215 n n 
CG SD MED sing 216 n n 
CG HG2 MED sing 217 n n 
CG HG3 MED sing 218 n n 
SD CE MED sing 219 n n 
CE HE1 MED sing 220 n n 
CE HE2 MED sing 221 n n 
CE HE3 MED sing 222 n n 
OXT HXT MED sing 223 n n 
#
_atom_sites.entry_id                     1Y9Q 
_atom_sites.fract_transf_matrix[1][1]    0.012622 
_atom_sites.fract_transf_matrix[1][2]    0.007287 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014575 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020061 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 202 202 ZN ZN . 
C 3 MED A 1 201 201 MED MED . 
D 4 HOH A 1 203 1 HOH TIP . 
D 4 HOH A 2 204 2 HOH TIP . 
D 4 HOH A 3 205 3 HOH TIP . 
D 4 HOH A 4 206 4 HOH TIP . 
D 4 HOH A 5 207 5 HOH TIP . 
D 4 HOH A 6 208 6 HOH TIP . 
D 4 HOH A 7 209 7 HOH TIP . 
D 4 HOH A 8 210 8 HOH TIP . 
D 4 HOH A 9 211 9 HOH TIP . 
D 4 HOH A 10 212 10 HOH TIP . 
D 4 HOH A 11 213 11 HOH TIP . 
D 4 HOH A 12 214 12 HOH TIP . 
D 4 HOH A 13 215 13 HOH TIP . 
D 4 HOH A 14 216 14 HOH TIP . 
D 4 HOH A 15 217 15 HOH TIP . 
D 4 HOH A 16 218 16 HOH TIP . 
D 4 HOH A 17 219 17 HOH TIP . 
D 4 HOH A 18 220 18 HOH TIP . 
D 4 HOH A 19 221 19 HOH TIP . 
D 4 HOH A 20 222 20 HOH TIP . 
D 4 HOH A 21 223 21 HOH TIP . 
D 4 HOH A 22 224 22 HOH TIP . 
D 4 HOH A 23 225 23 HOH TIP . 
D 4 HOH A 24 226 24 HOH TIP . 
D 4 HOH A 25 227 25 HOH TIP . 
D 4 HOH A 26 228 26 HOH TIP . 
D 4 HOH A 27 229 27 HOH TIP . 
D 4 HOH A 28 230 28 HOH TIP . 
D 4 HOH A 29 231 29 HOH TIP . 
D 4 HOH A 30 232 30 HOH TIP . 
D 4 HOH A 31 233 31 HOH TIP . 
D 4 HOH A 32 234 32 HOH TIP . 
D 4 HOH A 33 235 33 HOH TIP . 
D 4 HOH A 34 236 34 HOH TIP . 
D 4 HOH A 35 237 35 HOH TIP . 
D 4 HOH A 36 238 36 HOH TIP . 
D 4 HOH A 37 239 37 HOH TIP . 
D 4 HOH A 38 240 38 HOH TIP . 
D 4 HOH A 39 241 39 HOH TIP . 
D 4 HOH A 40 242 40 HOH TIP . 
D 4 HOH A 41 243 41 HOH TIP . 
D 4 HOH A 42 244 42 HOH TIP . 
D 4 HOH A 43 245 43 HOH TIP . 
D 4 HOH A 44 246 44 HOH TIP . 
D 4 HOH A 45 247 45 HOH TIP . 
D 4 HOH A 46 248 46 HOH TIP . 
D 4 HOH A 47 249 47 HOH TIP . 
D 4 HOH A 48 250 48 HOH TIP . 
D 4 HOH A 49 251 49 HOH TIP . 
D 4 HOH A 50 252 50 HOH TIP . 
D 4 HOH A 51 253 51 HOH TIP . 
D 4 HOH A 52 254 52 HOH TIP . 
D 4 HOH A 53 255 53 HOH TIP . 
D 4 HOH A 54 256 54 HOH TIP . 
D 4 HOH A 55 257 55 HOH TIP . 
D 4 HOH A 56 258 56 HOH TIP . 
D 4 HOH A 57 259 57 HOH TIP . 
D 4 HOH A 58 260 58 HOH TIP . 
D 4 HOH A 59 261 59 HOH TIP . 
D 4 HOH A 60 262 60 HOH TIP . 
D 4 HOH A 61 263 61 HOH TIP . 
D 4 HOH A 62 264 62 HOH TIP . 
D 4 HOH A 63 265 63 HOH TIP . 
D 4 HOH A 64 266 64 HOH TIP . 
D 4 HOH A 65 267 65 HOH TIP . 
D 4 HOH A 66 268 66 HOH TIP . 
D 4 HOH A 67 269 67 HOH TIP . 
D 4 HOH A 68 270 68 HOH TIP . 
D 4 HOH A 69 271 69 HOH TIP . 
D 4 HOH A 70 272 70 HOH TIP . 
D 4 HOH A 71 273 71 HOH TIP . 
D 4 HOH A 72 274 72 HOH TIP . 
D 4 HOH A 73 275 73 HOH TIP . 
D 4 HOH A 74 276 74 HOH TIP . 
D 4 HOH A 75 277 75 HOH TIP . 
D 4 HOH A 76 278 76 HOH TIP . 
D 4 HOH A 77 279 77 HOH TIP . 
D 4 HOH A 78 280 78 HOH TIP . 
D 4 HOH A 79 281 79 HOH TIP . 
D 4 HOH A 80 282 80 HOH TIP . 
D 4 HOH A 81 283 81 HOH TIP . 
D 4 HOH A 82 284 82 HOH TIP . 
D 4 HOH A 83 285 83 HOH TIP . 
D 4 HOH A 84 286 84 HOH TIP . 
D 4 HOH A 85 287 85 HOH TIP . 
D 4 HOH A 86 288 86 HOH TIP . 
D 4 HOH A 87 289 87 HOH TIP . 
D 4 HOH A 88 290 88 HOH TIP . 
D 4 HOH A 89 291 89 HOH TIP . 
D 4 HOH A 90 292 90 HOH TIP . 
D 4 HOH A 91 293 91 HOH TIP . 
D 4 HOH A 92 294 92 HOH TIP . 
D 4 HOH A 93 295 93 HOH TIP . 
D 4 HOH A 94 296 94 HOH TIP . 
D 4 HOH A 95 297 95 HOH TIP . 
D 4 HOH A 96 298 96 HOH TIP . 
D 4 HOH A 97 299 97 HOH TIP . 
D 4 HOH A 98 300 98 HOH TIP . 
D 4 HOH A 99 301 99 HOH TIP . 
D 4 HOH A 100 302 100 HOH TIP . 
D 4 HOH A 101 303 101 HOH TIP . 
D 4 HOH A 102 304 102 HOH TIP . 
D 4 HOH A 103 305 103 HOH TIP . 
D 4 HOH A 104 306 104 HOH TIP . 
D 4 HOH A 105 307 105 HOH TIP . 
D 4 HOH A 106 308 106 HOH TIP . 
D 4 HOH A 107 309 107 HOH TIP . 
D 4 HOH A 108 310 108 HOH TIP . 
D 4 HOH A 109 311 109 HOH TIP . 
D 4 HOH A 110 312 110 HOH TIP . 
D 4 HOH A 111 313 111 HOH TIP . 
D 4 HOH A 112 314 112 HOH TIP . 
D 4 HOH A 113 315 113 HOH TIP . 
D 4 HOH A 114 316 114 HOH TIP . 
D 4 HOH A 115 317 115 HOH TIP . 
D 4 HOH A 116 318 116 HOH TIP . 
D 4 HOH A 117 319 117 HOH TIP . 
D 4 HOH A 118 320 118 HOH TIP . 
D 4 HOH A 119 321 119 HOH TIP . 
D 4 HOH A 120 322 120 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N MED . . . C 3 63.87 19.237 -4.093 1 18.96 ? N MED 201 A 1 
HETATM 2 C CA MED . . . C 3 62.541 19.423 -3.441 1 19.19 ? CA MED 201 A 1 
HETATM 3 C C MED . . . C 3 62.689 19.533 -1.918 1 18.93 ? C MED 201 A 1 
HETATM 4 O O MED . . . C 3 63.786 19.471 -1.345 1 18.39 ? O MED 201 A 1 
HETATM 5 C CB MED . . . C 3 61.859 20.676 -4.037 1 20.75 ? CB MED 201 A 1 
HETATM 6 C CG MED . . . C 3 60.478 21.084 -3.566 1 24 ? CG MED 201 A 1 
HETATM 7 S SD MED . . . C 3 59.354 19.784 -4.161 1 25.05 ? SD MED 201 A 1 
HETATM 8 C CE MED . . . C 3 59.466 19.934 -5.889 1 26.46 ? CE MED 201 A 1 
HETATM 9 O OXT MED . . . C 3 61.684 19.682 -1.224 1 18.12 ? OXT MED 201 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           436 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           9 
#