data_1YA3 # _model_server_result.job_id 70SZ-Z9nBC-xySjThhcJ0g _model_server_result.datetime_utc '2024-11-28 14:07:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ya3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1001}' # _entry.id 1YA3 # _exptl.entry_id 1YA3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 314.462 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PROGESTERONE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1YA3 _cell.length_a 120.7237 _cell.length_b 120.7237 _cell.length_c 42.5081 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YA3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G 1 1 B,E,H 2 1 C,F,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C21 H30 O2' _chem_comp.formula_weight 314.462 _chem_comp.id STR _chem_comp.mon_nstd_flag . _chem_comp.name PROGESTERONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 STR sing 290 n n C1 C10 STR sing 291 n n C1 H11 STR sing 292 n n C1 H12 STR sing 293 n n C2 C3 STR sing 294 n n C2 H21 STR sing 295 n n C2 H22 STR sing 296 n n C3 O3 STR doub 297 n n C3 C4 STR sing 298 n n C4 C5 STR doub 299 n n C4 H4 STR sing 300 n n C5 C6 STR sing 301 n n C5 C10 STR sing 302 n n C6 C7 STR sing 303 n n C6 H61 STR sing 304 n n C6 H62 STR sing 305 n n C7 C8 STR sing 306 n n C7 H71 STR sing 307 n n C7 H72 STR sing 308 n n C8 C9 STR sing 309 n n C8 C14 STR sing 310 n n C8 H8 STR sing 311 n n C9 C10 STR sing 312 n n C9 C11 STR sing 313 n n C9 H9 STR sing 314 n n C10 C19 STR sing 315 n n C11 C12 STR sing 316 n n C11 H111 STR sing 317 n n C11 H112 STR sing 318 n n C12 C13 STR sing 319 n n C12 H121 STR sing 320 n n C12 H122 STR sing 321 n n C13 C14 STR sing 322 n n C13 C17 STR sing 323 n n C13 C18 STR sing 324 n n C14 C15 STR sing 325 n n C14 H14 STR sing 326 n n C15 C16 STR sing 327 n n C15 H151 STR sing 328 n n C15 H152 STR sing 329 n n C16 C17 STR sing 330 n n C16 H161 STR sing 331 n n C16 H162 STR sing 332 n n C17 C20 STR sing 333 n n C17 H17 STR sing 334 n n C18 H181 STR sing 335 n n C18 H182 STR sing 336 n n C18 H183 STR sing 337 n n C19 H191 STR sing 338 n n C19 H192 STR sing 339 n n C19 H193 STR sing 340 n n C20 O20 STR doub 341 n n C20 C21 STR sing 342 n n C21 H211 STR sing 343 n n C21 H212 STR sing 344 n n C21 H213 STR sing 345 n n # _atom_sites.entry_id 1YA3 _atom_sites.fract_transf_matrix[1][1] 0.008283 _atom_sites.fract_transf_matrix[1][2] 0.004782 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009565 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023525 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 STR A 1 1001 1001 STR PRG . E 2 STR B 1 2001 2001 STR PRG . F 2 STR C 1 3001 3001 STR PRG . G 3 HOH A 1 4002 4002 HOH HOH . G 3 HOH A 2 4007 4007 HOH HOH . G 3 HOH A 3 4008 4008 HOH HOH . G 3 HOH A 4 4010 4010 HOH HOH . G 3 HOH A 5 4011 4011 HOH HOH . G 3 HOH A 6 4014 4014 HOH HOH . G 3 HOH A 7 4015 4015 HOH HOH . G 3 HOH A 8 4017 4017 HOH HOH . G 3 HOH A 9 4018 4018 HOH HOH . G 3 HOH A 10 4020 4020 HOH HOH . G 3 HOH A 11 4022 4022 HOH HOH . G 3 HOH A 12 4025 4025 HOH HOH . G 3 HOH A 13 4026 4026 HOH HOH . G 3 HOH A 14 4028 4028 HOH HOH . G 3 HOH A 15 4031 4031 HOH HOH . G 3 HOH A 16 4033 4033 HOH HOH . G 3 HOH A 17 4049 4049 HOH HOH . G 3 HOH A 18 4050 4050 HOH HOH . G 3 HOH A 19 4051 4051 HOH HOH . G 3 HOH A 20 4052 4052 HOH HOH . G 3 HOH A 21 4053 4053 HOH HOH . G 3 HOH A 22 4056 4056 HOH HOH . H 3 HOH B 1 4006 4006 HOH HOH . H 3 HOH B 2 4009 4009 HOH HOH . H 3 HOH B 3 4016 4016 HOH HOH . H 3 HOH B 4 4023 4023 HOH HOH . H 3 HOH B 5 4024 4024 HOH HOH . H 3 HOH B 6 4030 4030 HOH HOH . H 3 HOH B 7 4034 4034 HOH HOH . H 3 HOH B 8 4054 4054 HOH HOH . H 3 HOH B 9 4055 4055 HOH HOH . H 3 HOH B 10 4057 4057 HOH HOH . I 3 HOH C 1 4001 4001 HOH HOH . I 3 HOH C 2 4003 4003 HOH HOH . I 3 HOH C 3 4004 4004 HOH HOH . I 3 HOH C 4 4005 4005 HOH HOH . I 3 HOH C 5 4012 4012 HOH HOH . I 3 HOH C 6 4013 4013 HOH HOH . I 3 HOH C 7 4019 4019 HOH HOH . I 3 HOH C 8 4021 4021 HOH HOH . I 3 HOH C 9 4027 4027 HOH HOH . I 3 HOH C 10 4029 4029 HOH HOH . I 3 HOH C 11 4032 4032 HOH HOH . I 3 HOH C 12 4035 4035 HOH HOH . I 3 HOH C 13 4036 4036 HOH HOH . I 3 HOH C 14 4037 4037 HOH HOH . I 3 HOH C 15 4038 4038 HOH HOH . I 3 HOH C 16 4039 4039 HOH HOH . I 3 HOH C 17 4040 4040 HOH HOH . I 3 HOH C 18 4041 4041 HOH HOH . I 3 HOH C 19 4042 4042 HOH HOH . I 3 HOH C 20 4043 4043 HOH HOH . I 3 HOH C 21 4044 4044 HOH HOH . I 3 HOH C 22 4045 4045 HOH HOH . I 3 HOH C 23 4046 4046 HOH HOH . I 3 HOH C 24 4047 4047 HOH HOH . I 3 HOH C 25 4048 4048 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 STR . . . D 2 123.5 -20.174 10.969 1 30.54 ? C1 STR 1001 A 1 HETATM 2 C C2 STR . . . D 2 123.023 -18.813 10.36 1 31.76 ? C2 STR 1001 A 1 HETATM 3 C C3 STR . . . D 2 121.674 -18.904 9.636 1 31.69 ? C3 STR 1001 A 1 HETATM 4 O O3 STR . . . D 2 121.452 -18.083 8.724 1 36.27 ? O3 STR 1001 A 1 HETATM 5 C C4 STR . . . D 2 120.671 -19.919 9.953 1 33.17 ? C4 STR 1001 A 1 HETATM 6 C C5 STR . . . D 2 120.891 -20.913 11.024 1 31.59 ? C5 STR 1001 A 1 HETATM 7 C C6 STR . . . D 2 119.724 -21.967 11.388 1 33.43 ? C6 STR 1001 A 1 HETATM 8 C C7 STR . . . D 2 120.237 -23.401 11.331 1 32.01 ? C7 STR 1001 A 1 HETATM 9 C C8 STR . . . D 2 121.554 -23.623 12.207 1 31.29 ? C8 STR 1001 A 1 HETATM 10 C C9 STR . . . D 2 122.78 -22.613 11.696 1 32.46 ? C9 STR 1001 A 1 HETATM 11 C C10 STR . . . D 2 122.337 -21.078 11.747 1 32.1 ? C10 STR 1001 A 1 HETATM 12 C C11 STR . . . D 2 124.222 -22.865 12.386 1 32.71 ? C11 STR 1001 A 1 HETATM 13 C C12 STR . . . D 2 124.602 -24.321 12.388 1 33.8 ? C12 STR 1001 A 1 HETATM 14 C C13 STR . . . D 2 123.457 -25.286 13.074 1 32.32 ? C13 STR 1001 A 1 HETATM 15 C C14 STR . . . D 2 122.099 -25.08 12.179 1 32.37 ? C14 STR 1001 A 1 HETATM 16 C C15 STR . . . D 2 121.144 -26.262 12.472 1 32.18 ? C15 STR 1001 A 1 HETATM 17 C C16 STR . . . D 2 122.174 -27.376 12.794 1 33.31 ? C16 STR 1001 A 1 HETATM 18 C C17 STR . . . D 2 123.636 -26.746 12.769 1 32.86 ? C17 STR 1001 A 1 HETATM 19 C C18 STR . . . D 2 123.307 -24.954 14.689 1 31.71 ? C18 STR 1001 A 1 HETATM 20 C C19 STR . . . D 2 122.134 -20.577 13.267 1 30.94 ? C19 STR 1001 A 1 HETATM 21 C C20 STR . . . D 2 124.685 -27.511 13.527 1 33.96 ? C20 STR 1001 A 1 HETATM 22 O O20 STR . . . D 2 124.323 -28.137 14.571 1 36.61 ? O20 STR 1001 A 1 HETATM 23 C C21 STR . . . D 2 126.133 -27.558 13.038 1 34.41 ? C21 STR 1001 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #