data_1YAM # _model_server_result.job_id WHbw0BaU16_vMUYrV8CYSQ _model_server_result.datetime_utc '2024-11-22 07:02:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yam # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 1YAM # _exptl.entry_id 1YAM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1YAM _cell.length_a 56.764 _cell.length_b 61.05 _cell.length_c 33.801 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YAM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 128 A CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 116 A CYS 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 65 A CYS 65 1_555 A SG CYS 81 A CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf4 A SG CYS 77 A CYS 77 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc1 A O SER 61 A SER 61 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc2 A O CYS 65 A CYS 65 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc3 A O VAL 74 A VAL 74 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc4 C O HOH . A HOH 138 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc5 C O HOH . A HOH 208 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1YAM _atom_sites.fract_transf_matrix[1][1] 0.017617 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01638 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029585 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 501 501 NA NA . C 3 HOH A 1 131 131 HOH HOH . C 3 HOH A 2 132 132 HOH HOH . C 3 HOH A 3 133 133 HOH HOH . C 3 HOH A 4 134 134 HOH HOH . C 3 HOH A 5 135 135 HOH HOH . C 3 HOH A 6 136 136 HOH HOH . C 3 HOH A 7 137 137 HOH HOH . C 3 HOH A 8 138 138 HOH HOH . C 3 HOH A 9 139 139 HOH HOH . C 3 HOH A 10 140 140 HOH HOH . C 3 HOH A 11 141 141 HOH HOH . C 3 HOH A 12 142 142 HOH HOH . C 3 HOH A 13 143 143 HOH HOH . C 3 HOH A 14 144 144 HOH HOH . C 3 HOH A 15 145 145 HOH HOH . C 3 HOH A 16 146 146 HOH HOH . C 3 HOH A 17 148 148 HOH HOH . C 3 HOH A 18 149 149 HOH HOH . C 3 HOH A 19 150 150 HOH HOH . C 3 HOH A 20 151 151 HOH HOH . C 3 HOH A 21 152 152 HOH HOH . C 3 HOH A 22 153 153 HOH HOH . C 3 HOH A 23 154 154 HOH HOH . C 3 HOH A 24 155 155 HOH HOH . C 3 HOH A 25 156 156 HOH HOH . C 3 HOH A 26 157 157 HOH HOH . C 3 HOH A 27 158 158 HOH HOH . C 3 HOH A 28 159 159 HOH HOH . C 3 HOH A 29 160 160 HOH HOH . C 3 HOH A 30 161 161 HOH HOH . C 3 HOH A 31 162 162 HOH HOH . C 3 HOH A 32 163 163 HOH HOH . C 3 HOH A 33 164 164 HOH HOH . C 3 HOH A 34 165 165 HOH HOH . C 3 HOH A 35 166 166 HOH HOH . C 3 HOH A 36 167 167 HOH HOH . C 3 HOH A 37 168 168 HOH HOH . C 3 HOH A 38 169 169 HOH HOH . C 3 HOH A 39 170 170 HOH HOH . C 3 HOH A 40 171 171 HOH HOH . C 3 HOH A 41 173 173 HOH HOH . C 3 HOH A 42 174 174 HOH HOH . C 3 HOH A 43 175 175 HOH HOH . C 3 HOH A 44 176 176 HOH HOH . C 3 HOH A 45 177 177 HOH HOH . C 3 HOH A 46 178 178 HOH HOH . C 3 HOH A 47 179 179 HOH HOH . C 3 HOH A 48 180 180 HOH HOH . C 3 HOH A 49 181 181 HOH HOH . C 3 HOH A 50 182 182 HOH HOH . C 3 HOH A 51 183 183 HOH HOH . C 3 HOH A 52 184 184 HOH HOH . C 3 HOH A 53 185 185 HOH HOH . C 3 HOH A 54 187 187 HOH HOH . C 3 HOH A 55 188 188 HOH HOH . C 3 HOH A 56 189 189 HOH HOH . C 3 HOH A 57 190 190 HOH HOH . C 3 HOH A 58 191 191 HOH HOH . C 3 HOH A 59 192 192 HOH HOH . C 3 HOH A 60 193 193 HOH HOH . C 3 HOH A 61 194 194 HOH HOH . C 3 HOH A 62 195 195 HOH HOH . C 3 HOH A 63 196 196 HOH HOH . C 3 HOH A 64 197 197 HOH HOH . C 3 HOH A 65 198 198 HOH HOH . C 3 HOH A 66 199 199 HOH HOH . C 3 HOH A 67 200 200 HOH HOH . C 3 HOH A 68 201 201 HOH HOH . C 3 HOH A 69 202 202 HOH HOH . C 3 HOH A 70 203 203 HOH HOH . C 3 HOH A 71 204 204 HOH HOH . C 3 HOH A 72 205 205 HOH HOH . C 3 HOH A 73 206 206 HOH HOH . C 3 HOH A 74 207 207 HOH HOH . C 3 HOH A 75 208 208 HOH HOH . C 3 HOH A 76 209 209 HOH HOH . C 3 HOH A 77 210 210 HOH HOH . C 3 HOH A 78 211 211 HOH HOH . C 3 HOH A 79 212 212 HOH HOH . C 3 HOH A 80 213 213 HOH HOH . C 3 HOH A 81 214 214 HOH HOH . C 3 HOH A 82 216 216 HOH HOH . C 3 HOH A 83 217 217 HOH HOH . C 3 HOH A 84 218 218 HOH HOH . C 3 HOH A 85 219 219 HOH HOH . C 3 HOH A 86 220 220 HOH HOH . C 3 HOH A 87 221 221 HOH HOH . C 3 HOH A 88 222 222 HOH HOH . C 3 HOH A 89 223 223 HOH HOH . C 3 HOH A 90 224 224 HOH HOH . C 3 HOH A 91 225 225 HOH HOH . C 3 HOH A 92 226 226 HOH HOH . C 3 HOH A 93 227 227 HOH HOH . C 3 HOH A 94 228 228 HOH HOH . C 3 HOH A 95 229 229 HOH HOH . C 3 HOH A 96 230 230 HOH HOH . C 3 HOH A 97 231 231 HOH HOH . C 3 HOH A 98 232 232 HOH HOH . C 3 HOH A 99 233 233 HOH HOH . C 3 HOH A 100 234 234 HOH HOH . C 3 HOH A 101 235 235 HOH HOH . C 3 HOH A 102 236 236 HOH HOH . C 3 HOH A 103 237 237 HOH HOH . C 3 HOH A 104 238 238 HOH HOH . C 3 HOH A 105 240 240 HOH HOH . C 3 HOH A 106 241 241 HOH HOH . C 3 HOH A 107 242 242 HOH HOH . C 3 HOH A 108 243 243 HOH HOH . C 3 HOH A 109 244 244 HOH HOH . C 3 HOH A 110 245 245 HOH HOH . C 3 HOH A 111 246 246 HOH HOH . C 3 HOH A 112 248 248 HOH HOH . C 3 HOH A 113 249 249 HOH HOH . C 3 HOH A 114 250 250 HOH HOH . C 3 HOH A 115 252 252 HOH HOH . C 3 HOH A 116 253 253 HOH HOH . C 3 HOH A 117 254 254 HOH HOH . C 3 HOH A 118 255 255 HOH HOH . C 3 HOH A 119 256 256 HOH HOH . C 3 HOH A 120 257 257 HOH HOH . C 3 HOH A 121 259 259 HOH HOH . C 3 HOH A 122 260 260 HOH HOH . C 3 HOH A 123 261 261 HOH HOH . C 3 HOH A 124 262 262 HOH HOH . C 3 HOH A 125 263 263 HOH HOH . C 3 HOH A 126 264 264 HOH HOH . C 3 HOH A 127 267 267 HOH HOH . C 3 HOH A 128 271 271 HOH HOH . C 3 HOH A 129 290 290 HOH HOH . C 3 HOH A 130 297 297 HOH HOH . C 3 HOH A 131 304 304 HOH HOH . C 3 HOH A 132 308 308 HOH HOH . C 3 HOH A 133 309 309 HOH HOH . C 3 HOH A 134 310 310 HOH HOH . C 3 HOH A 135 311 311 HOH HOH . C 3 HOH A 136 312 312 HOH HOH . C 3 HOH A 137 313 313 HOH HOH . C 3 HOH A 138 314 314 HOH HOH . C 3 HOH A 139 315 315 HOH HOH . C 3 HOH A 140 316 316 HOH HOH . C 3 HOH A 141 317 317 HOH HOH . C 3 HOH A 142 318 318 HOH HOH . C 3 HOH A 143 319 319 HOH HOH . C 3 HOH A 144 320 320 HOH HOH . C 3 HOH A 145 322 322 HOH HOH . C 3 HOH A 146 323 323 HOH HOH . C 3 HOH A 147 324 324 HOH HOH . C 3 HOH A 148 325 325 HOH HOH . C 3 HOH A 149 326 326 HOH HOH . C 3 HOH A 150 327 327 HOH HOH . C 3 HOH A 151 336 336 HOH HOH . C 3 HOH A 152 338 338 HOH HOH . C 3 HOH A 153 339 339 HOH HOH . C 3 HOH A 154 341 341 HOH HOH . C 3 HOH A 155 344 344 HOH HOH . C 3 HOH A 156 346 346 HOH HOH . C 3 HOH A 157 347 347 HOH HOH . C 3 HOH A 158 352 352 HOH HOH . C 3 HOH A 159 353 353 HOH HOH . C 3 HOH A 160 354 354 HOH HOH . C 3 HOH A 161 357 357 HOH HOH . C 3 HOH A 162 359 359 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 5.908 _atom_site.Cartn_y 7.238 _atom_site.Cartn_z 40.924 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 21.49 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #