data_1YAT # _model_server_result.job_id 3rynjFYTan6nguwvlZR4Ww _model_server_result.datetime_utc '2025-07-16 21:26:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yat # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":108}' # _entry.id 1YAT # _exptl.entry_id 1YAT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 804.018 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 8-DEETHYL-8-[BUT-3-ENYL]-ASCOMYCIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1YAT _cell.length_a 79.681 _cell.length_b 79.681 _cell.length_c 54.063 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YAT _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C44 H69 N O12' _chem_comp.formula_weight 804.018 _chem_comp.id FK5 _chem_comp.mon_nstd_flag . _chem_comp.name 8-DEETHYL-8-[BUT-3-ENYL]-ASCOMYCIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms K506 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 FK5 sing 83 n n C1 O1 FK5 sing 84 n n C1 O2 FK5 doub 85 n n C2 C3 FK5 sing 86 n n C2 N7 FK5 sing 87 n n C2 H2 FK5 sing 88 n n C3 C4 FK5 sing 89 n n C3 H31A FK5 sing 90 n n C3 H32A FK5 sing 91 n n C4 C5 FK5 sing 92 n n C4 H41 FK5 sing 93 n n C4 H42 FK5 sing 94 n n C5 C6 FK5 sing 95 n n C5 H51 FK5 sing 96 n n C5 H52 FK5 sing 97 n n C6 N7 FK5 sing 98 n n C6 H61 FK5 sing 99 n n C6 H62 FK5 sing 100 n n C8 C9 FK5 sing 101 n n C8 N7 FK5 sing 102 n n C8 O3 FK5 doub 103 n n C9 C10 FK5 sing 104 n n C9 O4 FK5 doub 105 n n C10 C11 FK5 sing 106 n n C10 O5 FK5 sing 107 n n C10 O6 FK5 sing 108 n n C11 C12 FK5 sing 109 n n C11 C35 FK5 sing 110 n n C11 H11 FK5 sing 111 n n C12 C13 FK5 sing 112 n n C12 H121 FK5 sing 113 n n C12 H122 FK5 sing 114 n n C13 C14 FK5 sing 115 n n C13 O7 FK5 sing 116 n n C13 H13 FK5 sing 117 n n C14 C15 FK5 sing 118 n n C14 O5 FK5 sing 119 n n C14 H14 FK5 sing 120 n n C15 C16 FK5 sing 121 n n C15 O8 FK5 sing 122 n n C15 H15 FK5 sing 123 n n C16 C17 FK5 sing 124 n n C16 H161 FK5 sing 125 n n C16 H162 FK5 sing 126 n n C17 C18 FK5 sing 127 n n C17 C36 FK5 sing 128 n n C17 H17 FK5 sing 129 n n C18 C19 FK5 sing 130 n n C18 H181 FK5 sing 131 n n C18 H182 FK5 sing 132 n n C19 C20 FK5 doub 133 e n C19 C37 FK5 sing 134 n n C20 C21 FK5 sing 135 n n C20 H20 FK5 sing 136 n n C21 C22 FK5 sing 137 n n C21 C38 FK5 sing 138 n n C21 H21 FK5 sing 139 n n C22 C23 FK5 sing 140 n n C22 O9 FK5 doub 141 n n C23 C24 FK5 sing 142 n n C23 H231 FK5 sing 143 n n C23 H232 FK5 sing 144 n n C24 C25 FK5 sing 145 n n C24 O10 FK5 sing 146 n n C24 H24 FK5 sing 147 n n C25 C26 FK5 sing 148 n n C25 C41 FK5 sing 149 n n C25 H25 FK5 sing 150 n n C26 C27 FK5 sing 151 n n C26 O1 FK5 sing 152 n n C26 H26 FK5 sing 153 n n C27 C28 FK5 doub 154 e n C27 C42 FK5 sing 155 n n C28 C29 FK5 sing 156 n n C28 H28 FK5 sing 157 n n C29 C30 FK5 sing 158 n n C29 C34 FK5 sing 159 n n C29 H29 FK5 sing 160 n n C30 C31 FK5 sing 161 n n C30 H301 FK5 sing 162 n n C30 H302 FK5 sing 163 n n C31 C32 FK5 sing 164 n n C31 O11 FK5 sing 165 n n C31 H31 FK5 sing 166 n n C32 C33 FK5 sing 167 n n C32 O12 FK5 sing 168 n n C32 H32 FK5 sing 169 n n C33 C34 FK5 sing 170 n n C33 H331 FK5 sing 171 n n C33 H332 FK5 sing 172 n n C34 H341 FK5 sing 173 n n C34 H342 FK5 sing 174 n n C35 H351 FK5 sing 175 n n C35 H352 FK5 sing 176 n n C35 H353 FK5 sing 177 n n C36 H361 FK5 sing 178 n n C36 H362 FK5 sing 179 n n C36 H363 FK5 sing 180 n n C37 H371 FK5 sing 181 n n C37 H372 FK5 sing 182 n n C37 H373 FK5 sing 183 n n C38 C39 FK5 sing 184 n n C38 H381 FK5 sing 185 n n C38 H382 FK5 sing 186 n n C39 C40 FK5 doub 187 n n C39 H39 FK5 sing 188 n n C40 H401 FK5 sing 189 n n C40 H402 FK5 sing 190 n n C41 H411 FK5 sing 191 n n C41 H412 FK5 sing 192 n n C41 H413 FK5 sing 193 n n C42 H421 FK5 sing 194 n n C42 H422 FK5 sing 195 n n C42 H423 FK5 sing 196 n n C43 O7 FK5 sing 197 n n C43 H431 FK5 sing 198 n n C43 H432 FK5 sing 199 n n C43 H433 FK5 sing 200 n n C44 O8 FK5 sing 201 n n C44 H441 FK5 sing 202 n n C44 H442 FK5 sing 203 n n C44 H443 FK5 sing 204 n n C45 O11 FK5 sing 205 n n C45 H451 FK5 sing 206 n n C45 H452 FK5 sing 207 n n C45 H453 FK5 sing 208 n n O6 HO6 FK5 sing 209 n n O10 HO10 FK5 sing 210 n n O12 HO12 FK5 sing 211 n n # _atom_sites.entry_id 1YAT _atom_sites.fract_transf_matrix[1][1] 0.01255 _atom_sites.fract_transf_matrix[1][2] 0.007246 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014492 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018497 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FK5 A 1 108 108 FK5 FK5 . C 3 HOH A 1 201 201 HOH HOH . C 3 HOH A 2 202 202 HOH HOH . C 3 HOH A 3 203 203 HOH HOH . C 3 HOH A 4 204 204 HOH HOH . C 3 HOH A 5 205 205 HOH HOH . C 3 HOH A 6 206 206 HOH HOH . C 3 HOH A 7 207 207 HOH HOH . C 3 HOH A 8 208 208 HOH HOH . C 3 HOH A 9 209 209 HOH HOH . C 3 HOH A 10 210 210 HOH HOH . C 3 HOH A 11 211 211 HOH HOH . C 3 HOH A 12 212 212 HOH HOH . C 3 HOH A 13 213 213 HOH HOH . C 3 HOH A 14 214 214 HOH HOH . C 3 HOH A 15 215 215 HOH HOH . C 3 HOH A 16 216 216 HOH HOH . C 3 HOH A 17 217 217 HOH HOH . C 3 HOH A 18 218 218 HOH HOH . C 3 HOH A 19 219 219 HOH HOH . C 3 HOH A 20 220 220 HOH HOH . C 3 HOH A 21 221 221 HOH HOH . C 3 HOH A 22 222 222 HOH HOH . C 3 HOH A 23 223 223 HOH HOH . C 3 HOH A 24 224 224 HOH HOH . C 3 HOH A 25 225 225 HOH HOH . C 3 HOH A 26 226 226 HOH HOH . C 3 HOH A 27 227 227 HOH HOH . C 3 HOH A 28 228 228 HOH HOH . C 3 HOH A 29 229 229 HOH HOH . C 3 HOH A 30 230 230 HOH HOH . C 3 HOH A 31 231 231 HOH HOH . C 3 HOH A 32 232 232 HOH HOH . C 3 HOH A 33 233 233 HOH HOH . C 3 HOH A 34 234 234 HOH HOH . C 3 HOH A 35 235 235 HOH HOH . C 3 HOH A 36 236 236 HOH HOH . C 3 HOH A 37 237 237 HOH HOH . C 3 HOH A 38 238 238 HOH HOH . C 3 HOH A 39 239 239 HOH HOH . C 3 HOH A 40 240 240 HOH HOH . C 3 HOH A 41 241 241 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 FK5 . . . B 2 49.66 27.941 1.687 1 12.73 ? C1 FK5 108 A 1 HETATM 2 C C2 FK5 . . . B 2 50.934 27.645 0.935 1 12.07 ? C2 FK5 108 A 1 HETATM 3 C C3 FK5 . . . B 2 51.755 28.948 0.872 1 10.62 ? C3 FK5 108 A 1 HETATM 4 C C4 FK5 . . . B 2 51.079 29.85 -0.133 1 10.74 ? C4 FK5 108 A 1 HETATM 5 C C5 FK5 . . . B 2 51.159 29.331 -1.565 1 9.75 ? C5 FK5 108 A 1 HETATM 6 C C6 FK5 . . . B 2 50.452 28 -1.587 1 10.82 ? C6 FK5 108 A 1 HETATM 7 C C8 FK5 . . . B 2 51.436 25.945 -0.691 1 13.4 ? C8 FK5 108 A 1 HETATM 8 C C9 FK5 . . . B 2 51.511 25.325 -2.059 1 13.75 ? C9 FK5 108 A 1 HETATM 9 C C10 FK5 . . . B 2 50.389 24.367 -2.47 1 13.83 ? C10 FK5 108 A 1 HETATM 10 C C11 FK5 . . . B 2 49.795 23.473 -1.362 1 13.51 ? C11 FK5 108 A 1 HETATM 11 C C12 FK5 . . . B 2 48.507 22.856 -1.952 1 12.82 ? C12 FK5 108 A 1 HETATM 12 C C13 FK5 . . . B 2 47.507 23.994 -2.338 1 13.32 ? C13 FK5 108 A 1 HETATM 13 C C14 FK5 . . . B 2 48.23 24.802 -3.47 1 13.31 ? C14 FK5 108 A 1 HETATM 14 C C15 FK5 . . . B 2 47.582 25.956 -4.215 1 12.59 ? C15 FK5 108 A 1 HETATM 15 C C16 FK5 . . . B 2 46.868 27.025 -3.423 1 11.63 ? C16 FK5 108 A 1 HETATM 16 C C17 FK5 . . . B 2 46.37 28.313 -4.133 1 10.23 ? C17 FK5 108 A 1 HETATM 17 C C18 FK5 . . . B 2 44.894 28.178 -4.509 1 10.18 ? C18 FK5 108 A 1 HETATM 18 C C19 FK5 . . . B 2 43.906 28.199 -3.415 1 10.56 ? C19 FK5 108 A 1 HETATM 19 C C20 FK5 . . . B 2 43.505 27.008 -2.893 1 10.94 ? C20 FK5 108 A 1 HETATM 20 C C21 FK5 . . . B 2 42.602 26.902 -1.682 1 11.09 ? C21 FK5 108 A 1 HETATM 21 C C22 FK5 . . . B 2 43.396 26.8 -0.394 1 11.02 ? C22 FK5 108 A 1 HETATM 22 C C23 FK5 . . . B 2 43.61 28.055 0.396 1 10.38 ? C23 FK5 108 A 1 HETATM 23 C C24 FK5 . . . B 2 44.74 28.01 1.385 1 11.16 ? C24 FK5 108 A 1 HETATM 24 C C25 FK5 . . . B 2 46.165 27.943 0.686 1 11.64 ? C25 FK5 108 A 1 HETATM 25 C C26 FK5 . . . B 2 47.297 27.662 1.714 1 12.16 ? C26 FK5 108 A 1 HETATM 26 C C27 FK5 . . . B 2 47.146 26.388 2.532 1 13.49 ? C27 FK5 108 A 1 HETATM 27 C C28 FK5 . . . B 2 46.964 26.593 3.828 1 15.08 ? C28 FK5 108 A 1 HETATM 28 C C29 FK5 . . . B 2 46.631 25.548 4.811 1 17.54 ? C29 FK5 108 A 1 HETATM 29 C C30 FK5 . . . B 2 47.573 25.391 5.994 1 18.14 ? C30 FK5 108 A 1 HETATM 30 C C31 FK5 . . . B 2 47.062 24.342 6.994 1 19.26 ? C31 FK5 108 A 1 HETATM 31 C C32 FK5 . . . B 2 45.671 24.762 7.436 1 20.28 ? C32 FK5 108 A 1 HETATM 32 C C33 FK5 . . . B 2 44.708 25.054 6.301 1 20.24 ? C33 FK5 108 A 1 HETATM 33 C C34 FK5 . . . B 2 45.307 26.157 5.423 1 19.42 ? C34 FK5 108 A 1 HETATM 34 C C35 FK5 . . . B 2 50.709 22.351 -0.909 1 13.23 ? C35 FK5 108 A 1 HETATM 35 C C36 FK5 . . . B 2 47.133 28.621 -5.429 1 9.04 ? C36 FK5 108 A 1 HETATM 36 C C37 FK5 . . . B 2 43.424 29.563 -2.932 1 9.09 ? C37 FK5 108 A 1 HETATM 37 C C38 FK5 . . . B 2 41.674 25.645 -1.882 1 11.57 ? C38 FK5 108 A 1 HETATM 38 C C39 FK5 . . . B 2 40.288 25.953 -1.27 1 12.62 ? C39 FK5 108 A 1 HETATM 39 C C40 FK5 . . . B 2 39.859 25.219 -0.225 1 13.88 ? C40 FK5 108 A 1 HETATM 40 C C41 FK5 . . . B 2 46.537 29.325 0.074 1 11.14 ? C41 FK5 108 A 1 HETATM 41 C C42 FK5 . . . B 2 46.942 25.049 1.807 1 13.33 ? C42 FK5 108 A 1 HETATM 42 C C43 FK5 . . . B 2 45.059 23.953 -2.377 1 13.75 ? C43 FK5 108 A 1 HETATM 43 C C44 FK5 . . . B 2 46.966 25.593 -6.494 1 14.11 ? C44 FK5 108 A 1 HETATM 44 C C45 FK5 . . . B 2 49.046 23.497 8.047 1 18.4 ? C45 FK5 108 A 1 HETATM 45 N N7 FK5 . . . B 2 50.889 27.152 -0.465 1 12.61 ? N7 FK5 108 A 1 HETATM 46 O O1 FK5 . . . B 2 48.552 27.638 0.994 1 12.39 ? O1 FK5 108 A 1 HETATM 47 O O2 FK5 . . . B 2 49.654 28.351 2.873 1 12.89 ? O2 FK5 108 A 1 HETATM 48 O O3 FK5 . . . B 2 51.94 25.262 0.228 1 13.79 ? O3 FK5 108 A 1 HETATM 49 O O4 FK5 . . . B 2 52.51 25.556 -2.728 1 14.69 ? O4 FK5 108 A 1 HETATM 50 O O5 FK5 . . . B 2 49.409 25.358 -2.869 1 14.44 ? O5 FK5 108 A 1 HETATM 51 O O6 FK5 . . . B 2 50.723 23.578 -3.585 1 14.71 ? O6 FK5 108 A 1 HETATM 52 O O7 FK5 . . . B 2 46.289 23.367 -2.824 1 13.54 ? O7 FK5 108 A 1 HETATM 53 O O8 FK5 . . . B 2 46.683 25.254 -5.113 1 13.59 ? O8 FK5 108 A 1 HETATM 54 O O9 FK5 . . . B 2 43.895 25.696 -0.035 1 11.5 ? O9 FK5 108 A 1 HETATM 55 O O10 FK5 . . . B 2 44.7 29.302 2.071 1 11.73 ? O10 FK5 108 A 1 HETATM 56 O O11 FK5 . . . B 2 47.859 24.267 8.197 1 18.81 ? O11 FK5 108 A 1 HETATM 57 O O12 FK5 . . . B 2 45.227 23.645 8.197 1 21.72 ? O12 FK5 108 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 438 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 57 #