data_1YAZ # _model_server_result.job_id WSqF3vgDU3FGo5wzwcBC_g _model_server_result.datetime_utc '2024-10-10 01:14:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yaz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":154}' # _entry.id 1YAZ # _exptl.entry_id 1YAZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 63.546 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COPPER (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1YAZ _cell.length_a 119.375 _cell.length_b 119.375 _cell.length_c 74.543 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YAZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 74.543 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 57 A CYS 57 1_555 A SG CYS 146 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc1 A ND1 HIS 46 A HIS 46 1_555 B CU CU . A CU 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc2 A NE2 HIS 48 A HIS 48 1_555 B CU CU . A CU 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? metalc ? metalc3 A NE2 HIS 63 A HIS 63 1_555 B CU CU . A CU 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc4 A ND1 HIS 63 A HIS 63 1_555 C ZN ZN . A ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc5 A ND1 HIS 71 A HIS 71 1_555 C ZN ZN . A ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc6 A ND1 HIS 80 A HIS 80 1_555 C ZN ZN . A ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc7 A OD1 ASP 83 A ASP 83 1_555 C ZN ZN . A ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? metalc ? metalc8 A NE2 HIS 120 A HIS 120 1_555 B CU CU . A CU 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc9 B CU CU . A CU 154 1_555 D N1 AZI . A AZI 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? # _chem_comp.formula 'Cu 2' _chem_comp.formula_weight 63.546 _chem_comp.id CU _chem_comp.mon_nstd_flag . _chem_comp.name 'COPPER (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1YAZ _atom_sites.fract_transf_matrix[1][1] 0.008377 _atom_sites.fract_transf_matrix[1][2] 0.004836 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009673 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013415 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CU A 1 154 154 CU CU . C 3 ZN A 1 155 155 ZN ZN . D 4 AZI A 1 156 156 AZI AZI . E 5 HOH A 1 157 157 HOH HOH . E 5 HOH A 2 158 158 HOH HOH . E 5 HOH A 3 159 159 HOH HOH . E 5 HOH A 4 160 160 HOH HOH . E 5 HOH A 5 161 161 HOH HOH . E 5 HOH A 6 162 162 HOH HOH . E 5 HOH A 7 163 163 HOH HOH . E 5 HOH A 8 164 164 HOH HOH . E 5 HOH A 9 165 165 HOH HOH . E 5 HOH A 10 166 166 HOH HOH . E 5 HOH A 11 167 167 HOH HOH . E 5 HOH A 12 168 168 HOH HOH . E 5 HOH A 13 169 169 HOH HOH . E 5 HOH A 14 170 170 HOH HOH . E 5 HOH A 15 171 171 HOH HOH . E 5 HOH A 16 172 172 HOH HOH . E 5 HOH A 17 173 173 HOH HOH . E 5 HOH A 18 174 174 HOH HOH . E 5 HOH A 19 175 175 HOH HOH . E 5 HOH A 20 176 176 HOH HOH . E 5 HOH A 21 177 177 HOH HOH . E 5 HOH A 22 178 178 HOH HOH . E 5 HOH A 23 179 179 HOH HOH . E 5 HOH A 24 180 180 HOH HOH . E 5 HOH A 25 181 181 HOH HOH . E 5 HOH A 26 182 182 HOH HOH . E 5 HOH A 27 183 183 HOH HOH . E 5 HOH A 28 184 184 HOH HOH . E 5 HOH A 29 185 185 HOH HOH . E 5 HOH A 30 186 186 HOH HOH . E 5 HOH A 31 187 187 HOH HOH . E 5 HOH A 32 188 188 HOH HOH . E 5 HOH A 33 189 189 HOH HOH . E 5 HOH A 34 190 190 HOH HOH . E 5 HOH A 35 191 191 HOH HOH . E 5 HOH A 36 192 192 HOH HOH . E 5 HOH A 37 193 193 HOH HOH . E 5 HOH A 38 194 194 HOH HOH . E 5 HOH A 39 195 195 HOH HOH . E 5 HOH A 40 196 196 HOH HOH . E 5 HOH A 41 197 197 HOH HOH . E 5 HOH A 42 198 198 HOH HOH . E 5 HOH A 43 199 199 HOH HOH . E 5 HOH A 44 200 200 HOH HOH . E 5 HOH A 45 201 201 HOH HOH . E 5 HOH A 46 202 202 HOH HOH . E 5 HOH A 47 203 203 HOH HOH . E 5 HOH A 48 204 204 HOH HOH . E 5 HOH A 49 205 205 HOH HOH . E 5 HOH A 50 206 206 HOH HOH . E 5 HOH A 51 207 207 HOH HOH . E 5 HOH A 52 208 208 HOH HOH . E 5 HOH A 53 209 209 HOH HOH . E 5 HOH A 54 210 210 HOH HOH . E 5 HOH A 55 211 211 HOH HOH . E 5 HOH A 56 212 212 HOH HOH . E 5 HOH A 57 213 213 HOH HOH . E 5 HOH A 58 214 214 HOH HOH . E 5 HOH A 59 215 215 HOH HOH . E 5 HOH A 60 216 216 HOH HOH . E 5 HOH A 61 217 217 HOH HOH . E 5 HOH A 62 218 218 HOH HOH . E 5 HOH A 63 219 219 HOH HOH . E 5 HOH A 64 220 220 HOH HOH . E 5 HOH A 65 221 221 HOH HOH . E 5 HOH A 66 222 222 HOH HOH . E 5 HOH A 67 223 223 HOH HOH . E 5 HOH A 68 224 224 HOH HOH . E 5 HOH A 69 225 225 HOH HOH . E 5 HOH A 70 226 226 HOH HOH . E 5 HOH A 71 227 227 HOH HOH . E 5 HOH A 72 228 228 HOH HOH . E 5 HOH A 73 229 229 HOH HOH . E 5 HOH A 74 230 230 HOH HOH . E 5 HOH A 75 231 231 HOH HOH . E 5 HOH A 76 232 232 HOH HOH . E 5 HOH A 77 233 233 HOH HOH . E 5 HOH A 78 234 234 HOH HOH . E 5 HOH A 79 235 235 HOH HOH . E 5 HOH A 80 236 236 HOH HOH . E 5 HOH A 81 237 237 HOH HOH . E 5 HOH A 82 238 238 HOH HOH . E 5 HOH A 83 239 239 HOH HOH . E 5 HOH A 84 240 240 HOH HOH . E 5 HOH A 85 241 241 HOH HOH . E 5 HOH A 86 242 242 HOH HOH . E 5 HOH A 87 243 243 HOH HOH . E 5 HOH A 88 244 244 HOH HOH . E 5 HOH A 89 245 245 HOH HOH . E 5 HOH A 90 246 246 HOH HOH . E 5 HOH A 91 247 247 HOH HOH . E 5 HOH A 92 248 248 HOH HOH . E 5 HOH A 93 249 249 HOH HOH . E 5 HOH A 94 250 250 HOH HOH . E 5 HOH A 95 251 251 HOH HOH . E 5 HOH A 96 252 252 HOH HOH . E 5 HOH A 97 253 253 HOH HOH . E 5 HOH A 98 254 254 HOH HOH . E 5 HOH A 99 255 255 HOH HOH . E 5 HOH A 100 256 256 HOH HOH . E 5 HOH A 101 257 257 HOH HOH . E 5 HOH A 102 258 258 HOH HOH . E 5 HOH A 103 259 259 HOH HOH . E 5 HOH A 104 260 260 HOH HOH . E 5 HOH A 105 261 261 HOH HOH . E 5 HOH A 106 262 262 HOH HOH . E 5 HOH A 107 263 263 HOH HOH . E 5 HOH A 108 264 264 HOH HOH . E 5 HOH A 109 265 265 HOH HOH . E 5 HOH A 110 266 266 HOH HOH . E 5 HOH A 111 267 267 HOH HOH . E 5 HOH A 112 268 268 HOH HOH . E 5 HOH A 113 269 269 HOH HOH . E 5 HOH A 114 270 270 HOH HOH . E 5 HOH A 115 271 271 HOH HOH . E 5 HOH A 116 272 272 HOH HOH . E 5 HOH A 117 273 273 HOH HOH . E 5 HOH A 118 274 274 HOH HOH . E 5 HOH A 119 275 275 HOH HOH . E 5 HOH A 120 276 276 HOH HOH . E 5 HOH A 121 277 277 HOH HOH . E 5 HOH A 122 278 278 HOH HOH . E 5 HOH A 123 279 279 HOH HOH . E 5 HOH A 124 280 280 HOH HOH . E 5 HOH A 125 281 281 HOH HOH . E 5 HOH A 126 282 282 HOH HOH . E 5 HOH A 127 283 283 HOH HOH . E 5 HOH A 128 284 284 HOH HOH . E 5 HOH A 129 285 285 HOH HOH . E 5 HOH A 130 286 286 HOH HOH . E 5 HOH A 131 287 287 HOH HOH . E 5 HOH A 132 288 288 HOH HOH . E 5 HOH A 133 289 289 HOH HOH . E 5 HOH A 134 290 290 HOH HOH . E 5 HOH A 135 291 291 HOH HOH . E 5 HOH A 136 292 292 HOH HOH . E 5 HOH A 137 293 293 HOH HOH . E 5 HOH A 138 294 294 HOH HOH . E 5 HOH A 139 295 295 HOH HOH . E 5 HOH A 140 296 296 HOH HOH . E 5 HOH A 141 297 297 HOH HOH . E 5 HOH A 142 298 298 HOH HOH . E 5 HOH A 143 299 299 HOH HOH . E 5 HOH A 144 300 300 HOH HOH . E 5 HOH A 145 301 301 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CU _atom_site.label_atom_id CU _atom_site.label_comp_id CU _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 6.292 _atom_site.Cartn_y 17.98 _atom_site.Cartn_z 20.197 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 22.61 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CU _atom_site.auth_comp_id CU _atom_site.auth_seq_id 154 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #