data_1YBQ # _model_server_result.job_id Fd_Gqvc3O0dV4sVpLBdr1A _model_server_result.datetime_utc '2024-10-11 22:20:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ybq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":391}' # _entry.id 1YBQ # _exptl.entry_id 1YBQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1YBQ _cell.length_a 119.3 _cell.length_b 119.3 _cell.length_c 138.3 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YBQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 4 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 119.3 0 0 3 'crystal symmetry operation' 3_545 -y+1/2,x-1/2,z 0 -1 0 1 0 0 0 0 1 59.65 -59.65 0 4 'crystal symmetry operation' 4_555 y+1/2,-x+1/2,z 0 1 0 -1 0 0 0 0 1 59.65 59.65 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C VAL 161 B VAL 161 1_555 B N KCX 162 B KCX 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale2 B C KCX 162 B KCX 162 1_555 B N CYS 163 B CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? metalc ? metalc1 A NE2 HIS 68 A HIS 68 1_555 C ZN ZN . A ZN 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc2 A NE2 HIS 70 A HIS 70 1_555 C ZN ZN . A ZN 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc3 A ND1 HIS 201 A HIS 201 1_555 D ZN ZN . A ZN 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc4 A NE2 HIS 230 A HIS 230 1_555 D ZN ZN . A ZN 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc5 A OD1 ASN 285 A ASN 285 1_555 C ZN ZN . A ZN 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc6 C ZN ZN . A ZN 391 1_555 I O HOH . A HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.716 ? metalc ? metalc7 D ZN ZN . A ZN 392 1_555 E O3 BDH . A BDH 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc8 D ZN ZN . A ZN 392 1_555 I O HOH . A HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? metalc ? metalc9 B NE2 HIS 68 B HIS 68 1_555 F ZN ZN . B ZN 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc10 B NE2 HIS 70 B HIS 70 1_555 F ZN ZN . B ZN 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc11 B ND1 HIS 201 B HIS 201 1_555 G ZN ZN . B ZN 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc12 B NE2 HIS 230 B HIS 230 1_555 G ZN ZN . B ZN 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc13 B OD1 ASN 285 B ASN 285 1_555 F ZN ZN . B ZN 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc14 G ZN ZN . B ZN 392 1_555 H O3 BDH . B BDH 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1YBQ _atom_sites.fract_transf_matrix[1][1] 0.008382 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008382 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007231 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 391 391 ZN ZN . D 3 ZN A 1 392 392 ZN ZN . E 4 BDH A 1 393 393 BDH BDH . F 3 ZN B 1 391 391 ZN ZN . G 3 ZN B 1 392 392 ZN ZN . H 4 BDH B 1 393 393 BDH BDH . I 5 HOH A 1 394 394 HOH HOH . I 5 HOH A 2 395 395 HOH HOH . I 5 HOH A 3 396 396 HOH HOH . I 5 HOH A 4 397 397 HOH HOH . I 5 HOH A 5 398 398 HOH HOH . I 5 HOH A 6 399 399 HOH HOH . I 5 HOH A 7 400 400 HOH HOH . I 5 HOH A 8 401 401 HOH HOH . I 5 HOH A 9 402 402 HOH HOH . I 5 HOH A 10 403 403 HOH HOH . I 5 HOH A 11 404 404 HOH HOH . I 5 HOH A 12 405 405 HOH HOH . I 5 HOH A 13 406 406 HOH HOH . I 5 HOH A 14 407 407 HOH HOH . I 5 HOH A 15 408 408 HOH HOH . I 5 HOH A 16 409 409 HOH HOH . I 5 HOH A 17 410 410 HOH HOH . I 5 HOH A 18 411 411 HOH HOH . I 5 HOH A 19 412 412 HOH HOH . I 5 HOH A 20 413 413 HOH HOH . I 5 HOH A 21 414 414 HOH HOH . I 5 HOH A 22 415 415 HOH HOH . I 5 HOH A 23 416 416 HOH HOH . I 5 HOH A 24 417 417 HOH HOH . I 5 HOH A 25 418 418 HOH HOH . I 5 HOH A 26 419 419 HOH HOH . I 5 HOH A 27 420 420 HOH HOH . I 5 HOH A 28 421 421 HOH HOH . I 5 HOH A 29 422 422 HOH HOH . I 5 HOH A 30 423 423 HOH HOH . I 5 HOH A 31 424 424 HOH HOH . I 5 HOH A 32 425 425 HOH HOH . I 5 HOH A 33 426 426 HOH HOH . I 5 HOH A 34 427 427 HOH HOH . I 5 HOH A 35 428 428 HOH HOH . I 5 HOH A 36 429 429 HOH HOH . I 5 HOH A 37 430 430 HOH HOH . I 5 HOH A 38 431 431 HOH HOH . I 5 HOH A 39 432 432 HOH HOH . I 5 HOH A 40 433 433 HOH HOH . I 5 HOH A 41 434 434 HOH HOH . I 5 HOH A 42 435 435 HOH HOH . I 5 HOH A 43 436 436 HOH HOH . I 5 HOH A 44 437 437 HOH HOH . I 5 HOH A 45 438 438 HOH HOH . I 5 HOH A 46 439 439 HOH HOH . I 5 HOH A 47 440 440 HOH HOH . I 5 HOH A 48 441 441 HOH HOH . I 5 HOH A 49 442 442 HOH HOH . I 5 HOH A 50 443 443 HOH HOH . I 5 HOH A 51 444 444 HOH HOH . I 5 HOH A 52 445 445 HOH HOH . I 5 HOH A 53 446 446 HOH HOH . I 5 HOH A 54 447 447 HOH HOH . I 5 HOH A 55 448 448 HOH HOH . I 5 HOH A 56 449 449 HOH HOH . I 5 HOH A 57 450 450 HOH HOH . I 5 HOH A 58 451 451 HOH HOH . I 5 HOH A 59 452 452 HOH HOH . I 5 HOH A 60 453 453 HOH HOH . I 5 HOH A 61 454 454 HOH HOH . I 5 HOH A 62 455 455 HOH HOH . I 5 HOH A 63 456 456 HOH HOH . I 5 HOH A 64 457 457 HOH HOH . I 5 HOH A 65 458 458 HOH HOH . I 5 HOH A 66 459 459 HOH HOH . I 5 HOH A 67 460 460 HOH HOH . I 5 HOH A 68 461 461 HOH HOH . I 5 HOH A 69 462 462 HOH HOH . I 5 HOH A 70 463 463 HOH HOH . I 5 HOH A 71 464 464 HOH HOH . I 5 HOH A 72 465 465 HOH HOH . I 5 HOH A 73 466 466 HOH HOH . I 5 HOH A 74 467 467 HOH HOH . I 5 HOH A 75 468 468 HOH HOH . I 5 HOH A 76 469 469 HOH HOH . I 5 HOH A 77 470 470 HOH HOH . I 5 HOH A 78 471 471 HOH HOH . I 5 HOH A 79 472 472 HOH HOH . I 5 HOH A 80 473 473 HOH HOH . I 5 HOH A 81 474 474 HOH HOH . I 5 HOH A 82 475 475 HOH HOH . I 5 HOH A 83 476 476 HOH HOH . I 5 HOH A 84 477 477 HOH HOH . I 5 HOH A 85 478 478 HOH HOH . I 5 HOH A 86 479 479 HOH HOH . I 5 HOH A 87 480 480 HOH HOH . I 5 HOH A 88 481 481 HOH HOH . I 5 HOH A 89 482 482 HOH HOH . I 5 HOH A 90 483 483 HOH HOH . I 5 HOH A 91 484 484 HOH HOH . I 5 HOH A 92 485 485 HOH HOH . I 5 HOH A 93 486 486 HOH HOH . I 5 HOH A 94 487 487 HOH HOH . I 5 HOH A 95 488 488 HOH HOH . I 5 HOH A 96 489 489 HOH HOH . I 5 HOH A 97 490 490 HOH HOH . I 5 HOH A 98 491 491 HOH HOH . I 5 HOH A 99 492 492 HOH HOH . I 5 HOH A 100 493 493 HOH HOH . I 5 HOH A 101 494 494 HOH HOH . I 5 HOH A 102 495 495 HOH HOH . I 5 HOH A 103 496 496 HOH HOH . I 5 HOH A 104 497 497 HOH HOH . I 5 HOH A 105 498 498 HOH HOH . I 5 HOH A 106 499 499 HOH HOH . I 5 HOH A 107 500 500 HOH HOH . I 5 HOH A 108 501 501 HOH HOH . I 5 HOH A 109 502 502 HOH HOH . I 5 HOH A 110 503 503 HOH HOH . I 5 HOH A 111 504 504 HOH HOH . I 5 HOH A 112 505 505 HOH HOH . I 5 HOH A 113 506 506 HOH HOH . I 5 HOH A 114 507 507 HOH HOH . I 5 HOH A 115 508 508 HOH HOH . J 5 HOH B 1 394 394 HOH HOH . J 5 HOH B 2 395 395 HOH HOH . J 5 HOH B 3 396 396 HOH HOH . J 5 HOH B 4 397 397 HOH HOH . J 5 HOH B 5 398 398 HOH HOH . J 5 HOH B 6 399 399 HOH HOH . J 5 HOH B 7 400 400 HOH HOH . J 5 HOH B 8 401 401 HOH HOH . J 5 HOH B 9 402 402 HOH HOH . J 5 HOH B 10 403 403 HOH HOH . J 5 HOH B 11 404 404 HOH HOH . J 5 HOH B 12 405 405 HOH HOH . J 5 HOH B 13 406 406 HOH HOH . J 5 HOH B 14 407 407 HOH HOH . J 5 HOH B 15 408 408 HOH HOH . J 5 HOH B 16 409 409 HOH HOH . J 5 HOH B 17 410 410 HOH HOH . J 5 HOH B 18 411 411 HOH HOH . J 5 HOH B 19 412 412 HOH HOH . J 5 HOH B 20 413 413 HOH HOH . J 5 HOH B 21 414 414 HOH HOH . J 5 HOH B 22 415 415 HOH HOH . J 5 HOH B 23 416 416 HOH HOH . J 5 HOH B 24 417 417 HOH HOH . J 5 HOH B 25 418 418 HOH HOH . J 5 HOH B 26 419 419 HOH HOH . J 5 HOH B 27 420 420 HOH HOH . J 5 HOH B 28 421 421 HOH HOH . J 5 HOH B 29 422 422 HOH HOH . J 5 HOH B 30 423 423 HOH HOH . J 5 HOH B 31 424 424 HOH HOH . J 5 HOH B 32 425 425 HOH HOH . J 5 HOH B 33 426 426 HOH HOH . J 5 HOH B 34 427 427 HOH HOH . J 5 HOH B 35 428 428 HOH HOH . J 5 HOH B 36 429 429 HOH HOH . J 5 HOH B 37 430 430 HOH HOH . J 5 HOH B 38 431 431 HOH HOH . J 5 HOH B 39 432 432 HOH HOH . J 5 HOH B 40 433 433 HOH HOH . J 5 HOH B 41 434 434 HOH HOH . J 5 HOH B 42 435 435 HOH HOH . J 5 HOH B 43 436 436 HOH HOH . J 5 HOH B 44 437 437 HOH HOH . J 5 HOH B 45 438 438 HOH HOH . J 5 HOH B 46 439 439 HOH HOH . J 5 HOH B 47 440 440 HOH HOH . J 5 HOH B 48 441 441 HOH HOH . J 5 HOH B 49 442 442 HOH HOH . J 5 HOH B 50 443 443 HOH HOH . J 5 HOH B 51 444 444 HOH HOH . J 5 HOH B 52 445 445 HOH HOH . J 5 HOH B 53 446 446 HOH HOH . J 5 HOH B 54 447 447 HOH HOH . J 5 HOH B 55 448 448 HOH HOH . J 5 HOH B 56 449 449 HOH HOH . J 5 HOH B 57 450 450 HOH HOH . J 5 HOH B 58 451 451 HOH HOH . J 5 HOH B 59 452 452 HOH HOH . J 5 HOH B 60 453 453 HOH HOH . J 5 HOH B 61 454 454 HOH HOH . J 5 HOH B 62 455 455 HOH HOH . J 5 HOH B 63 456 456 HOH HOH . J 5 HOH B 64 457 457 HOH HOH . J 5 HOH B 65 458 458 HOH HOH . J 5 HOH B 66 459 459 HOH HOH . J 5 HOH B 67 460 460 HOH HOH . J 5 HOH B 68 461 461 HOH HOH . J 5 HOH B 69 462 462 HOH HOH . J 5 HOH B 70 463 463 HOH HOH . J 5 HOH B 71 464 464 HOH HOH . J 5 HOH B 72 465 465 HOH HOH . J 5 HOH B 73 466 466 HOH HOH . J 5 HOH B 74 467 467 HOH HOH . J 5 HOH B 75 468 468 HOH HOH . J 5 HOH B 76 469 469 HOH HOH . J 5 HOH B 77 470 470 HOH HOH . J 5 HOH B 78 471 471 HOH HOH . J 5 HOH B 79 472 472 HOH HOH . J 5 HOH B 80 473 473 HOH HOH . J 5 HOH B 81 474 474 HOH HOH . J 5 HOH B 82 475 475 HOH HOH . J 5 HOH B 83 476 476 HOH HOH . J 5 HOH B 84 477 477 HOH HOH . J 5 HOH B 85 478 478 HOH HOH . J 5 HOH B 86 479 479 HOH HOH . J 5 HOH B 87 480 480 HOH HOH . J 5 HOH B 88 481 481 HOH HOH . J 5 HOH B 89 482 482 HOH HOH . J 5 HOH B 90 483 483 HOH HOH . J 5 HOH B 91 484 484 HOH HOH . J 5 HOH B 92 485 485 HOH HOH . J 5 HOH B 93 486 486 HOH HOH . J 5 HOH B 94 487 487 HOH HOH . J 5 HOH B 95 488 488 HOH HOH . J 5 HOH B 96 489 489 HOH HOH . J 5 HOH B 97 490 490 HOH HOH . J 5 HOH B 98 491 491 HOH HOH . J 5 HOH B 99 492 492 HOH HOH . J 5 HOH B 100 493 493 HOH HOH . J 5 HOH B 101 494 494 HOH HOH . J 5 HOH B 102 495 495 HOH HOH . J 5 HOH B 103 496 496 HOH HOH . J 5 HOH B 104 497 497 HOH HOH . J 5 HOH B 105 498 498 HOH HOH . J 5 HOH B 106 499 499 HOH HOH . J 5 HOH B 107 500 500 HOH HOH . J 5 HOH B 108 501 501 HOH HOH . J 5 HOH B 109 502 502 HOH HOH . J 5 HOH B 110 503 503 HOH HOH . J 5 HOH B 111 504 504 HOH HOH . J 5 HOH B 112 505 505 HOH HOH . J 5 HOH B 113 506 506 HOH HOH . J 5 HOH B 114 507 507 HOH HOH . J 5 HOH B 115 508 508 HOH HOH . J 5 HOH B 116 509 509 HOH HOH . J 5 HOH B 117 510 510 HOH HOH . J 5 HOH B 118 511 511 HOH HOH . J 5 HOH B 119 512 512 HOH HOH . J 5 HOH B 120 513 513 HOH HOH . J 5 HOH B 121 514 514 HOH HOH . J 5 HOH B 122 515 515 HOH HOH . J 5 HOH B 123 516 516 HOH HOH . J 5 HOH B 124 517 517 HOH HOH . J 5 HOH B 125 518 518 HOH HOH . J 5 HOH B 126 519 519 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x 32.06 _atom_site.Cartn_y -4.85 _atom_site.Cartn_z 53.038 _atom_site.occupancy 0.25 _atom_site.B_iso_or_equiv 21.92 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 391 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 1 #