data_1YBX
#
_model_server_result.job_id            rZHQlT3yroiEWc7bT1EGUw 
_model_server_result.datetime_utc      '2025-02-23 02:41:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ybx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":203}' 
#
_entry.id    1YBX 
#
_exptl.entry_id    1YBX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              ? 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'UNKNOWN ATOM OR ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          111.93 
_cell.angle_gamma         90 
_cell.entry_id            1YBX 
_cell.length_a            49.914 
_cell.length_b            36.792 
_cell.length_c            61.824 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1YBX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C LYS 52 A LYS 22 1_555 A N MSE 53 A MSE 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale2 A C MSE 53 A MSE 23 1_555 A N GLN 54 A GLN 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? 
covale ? covale3 A C ASP 56 A ASP 26 1_555 A N MSE 57 A MSE 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale4 A C MSE 57 A MSE 27 1_555 A N GLU 58 A GLU 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? 
covale ? covale5 A C GLU 104 A GLU 74 1_555 A N MSE 105 A MSE 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale6 A C MSE 105 A MSE 75 1_555 A N LEU 106 A LEU 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale7 A C GLU 123 A GLU 93 1_555 A N MSE 124 A MSE 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale8 A C MSE 124 A MSE 94 1_555 A N VAL 125 A VAL 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale9 B C LYS 52 B LYS 22 1_555 B N MSE 53 B MSE 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale10 B C MSE 53 B MSE 23 1_555 B N GLN 54 B GLN 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale11 B C ASP 56 B ASP 26 1_555 B N MSE 57 B MSE 27 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.338 ? 
covale ? covale12 B C ASP 56 B ASP 26 1_555 B N MSE 57 B MSE 27 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.329 ? 
covale ? covale13 B C MSE 57 B MSE 27 1_555 B N GLU 58 B GLU 28 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale14 B C MSE 57 B MSE 27 1_555 B N GLU 58 B GLU 28 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale15 B C GLU 104 B GLU 74 1_555 B N MSE 105 B MSE 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale16 B C MSE 105 B MSE 75 1_555 B N LEU 106 B LEU 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale17 B C GLU 123 B GLU 93 1_555 B N MSE 124 B MSE 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale18 B C MSE 124 B MSE 94 1_555 B N VAL 125 B VAL 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
#
_chem_comp.formula           ? 
_chem_comp.formula_weight    ? 
_chem_comp.id                UNX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'UNKNOWN ATOM OR ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1YBX 
_atom_sites.fract_transf_matrix[1][1]    0.02 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.0081 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0272 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.0174 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 UNX A 1 201 201 UNX UNX . 
D 2 UNX A 1 202 202 UNX UNX . 
E 2 UNX A 1 203 203 UNX UNX . 
F 2 UNX B 1 204 204 UNX UNX . 
G 3 HOH A 1 301 301 HOH HOH . 
G 3 HOH A 2 303 303 HOH HOH . 
G 3 HOH A 3 304 304 HOH HOH . 
G 3 HOH A 4 305 305 HOH HOH . 
G 3 HOH A 5 311 311 HOH HOH . 
G 3 HOH A 6 313 313 HOH HOH . 
G 3 HOH A 7 314 314 HOH HOH . 
G 3 HOH A 8 316 316 HOH HOH . 
G 3 HOH A 9 319 319 HOH HOH . 
G 3 HOH A 10 320 320 HOH HOH . 
G 3 HOH A 11 321 321 HOH HOH . 
G 3 HOH A 12 325 325 HOH HOH . 
G 3 HOH A 13 327 327 HOH HOH . 
G 3 HOH A 14 329 329 HOH HOH . 
G 3 HOH A 15 330 330 HOH HOH . 
G 3 HOH A 16 332 332 HOH HOH . 
G 3 HOH A 17 334 334 HOH HOH . 
G 3 HOH A 18 335 335 HOH HOH . 
G 3 HOH A 19 338 338 HOH HOH . 
G 3 HOH A 20 339 339 HOH HOH . 
G 3 HOH A 21 340 340 HOH HOH . 
G 3 HOH A 22 341 341 HOH HOH . 
G 3 HOH A 23 342 342 HOH HOH . 
G 3 HOH A 24 348 348 HOH HOH . 
G 3 HOH A 25 352 352 HOH HOH . 
G 3 HOH A 26 354 354 HOH HOH . 
G 3 HOH A 27 355 355 HOH HOH . 
G 3 HOH A 28 359 359 HOH HOH . 
G 3 HOH A 29 362 362 HOH HOH . 
G 3 HOH A 30 363 363 HOH HOH . 
G 3 HOH A 31 366 366 HOH HOH . 
G 3 HOH A 32 367 367 HOH HOH . 
G 3 HOH A 33 369 369 HOH HOH . 
G 3 HOH A 34 370 370 HOH HOH . 
G 3 HOH A 35 372 372 HOH HOH . 
G 3 HOH A 36 374 374 HOH HOH . 
G 3 HOH A 37 375 375 HOH HOH . 
G 3 HOH A 38 379 379 HOH HOH . 
G 3 HOH A 39 380 380 HOH HOH . 
G 3 HOH A 40 383 383 HOH HOH . 
G 3 HOH A 41 384 384 HOH HOH . 
G 3 HOH A 42 385 385 HOH HOH . 
G 3 HOH A 43 386 386 HOH HOH . 
G 3 HOH A 44 387 387 HOH HOH . 
G 3 HOH A 45 388 388 HOH HOH . 
G 3 HOH A 46 389 389 HOH HOH . 
H 3 HOH B 1 302 302 HOH HOH . 
H 3 HOH B 2 306 306 HOH HOH . 
H 3 HOH B 3 307 307 HOH HOH . 
H 3 HOH B 4 308 308 HOH HOH . 
H 3 HOH B 5 309 309 HOH HOH . 
H 3 HOH B 6 310 310 HOH HOH . 
H 3 HOH B 7 312 312 HOH HOH . 
H 3 HOH B 8 315 315 HOH HOH . 
H 3 HOH B 9 317 317 HOH HOH . 
H 3 HOH B 10 318 318 HOH HOH . 
H 3 HOH B 11 322 322 HOH HOH . 
H 3 HOH B 12 323 323 HOH HOH . 
H 3 HOH B 13 324 324 HOH HOH . 
H 3 HOH B 14 326 326 HOH HOH . 
H 3 HOH B 15 328 328 HOH HOH . 
H 3 HOH B 16 331 331 HOH HOH . 
H 3 HOH B 17 333 333 HOH HOH . 
H 3 HOH B 18 336 336 HOH HOH . 
H 3 HOH B 19 337 337 HOH HOH . 
H 3 HOH B 20 343 343 HOH HOH . 
H 3 HOH B 21 344 344 HOH HOH . 
H 3 HOH B 22 345 345 HOH HOH . 
H 3 HOH B 23 346 346 HOH HOH . 
H 3 HOH B 24 347 347 HOH HOH . 
H 3 HOH B 25 349 349 HOH HOH . 
H 3 HOH B 26 350 350 HOH HOH . 
H 3 HOH B 27 351 351 HOH HOH . 
H 3 HOH B 28 353 353 HOH HOH . 
H 3 HOH B 29 356 356 HOH HOH . 
H 3 HOH B 30 357 357 HOH HOH . 
H 3 HOH B 31 358 358 HOH HOH . 
H 3 HOH B 32 360 360 HOH HOH . 
H 3 HOH B 33 361 361 HOH HOH . 
H 3 HOH B 34 364 364 HOH HOH . 
H 3 HOH B 35 365 365 HOH HOH . 
H 3 HOH B 36 368 368 HOH HOH . 
H 3 HOH B 37 371 371 HOH HOH . 
H 3 HOH B 38 373 373 HOH HOH . 
H 3 HOH B 39 376 376 HOH HOH . 
H 3 HOH B 40 377 377 HOH HOH . 
H 3 HOH B 41 378 378 HOH HOH . 
H 3 HOH B 42 381 381 HOH HOH . 
H 3 HOH B 43 382 382 HOH HOH . 
H 3 HOH B 44 390 390 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           X 
_atom_site.label_atom_id         UNK 
_atom_site.label_comp_id         UNX 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -14.447 
_atom_site.Cartn_y               17.304 
_atom_site.Cartn_z               31.851 
_atom_site.occupancy             0.01 
_atom_site.B_iso_or_equiv        2 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          UNK 
_atom_site.auth_comp_id          UNX 
_atom_site.auth_seq_id           203 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           468 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#