data_1YBY
#
_model_server_result.job_id            D1KA2LeCJyxAKbO8g1xjKw 
_model_server_result.datetime_utc      '2024-11-16 23:49:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1yby 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1001}' 
#
_entry.id    1YBY 
#
_exptl.entry_id    1YBY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              ? 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'UNKNOWN ATOM OR ION' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          120.84 
_cell.angle_gamma         90 
_cell.entry_id            1YBY 
_cell.length_a            114.915 
_cell.length_b            55.476 
_cell.length_c            88.462 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1YBY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C MSE 31 A MSE 1 1_555 A N ILE 32 A ILE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale2 A C LYS 89 A LYS 59 1_555 A N MSE 90 A MSE 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? 
covale ? covale3 A C MSE 90 A MSE 60 1_555 A N PRO 91 A PRO 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? 
covale ? covale4 A C ASP 99 A ASP 69 1_555 A N MSE 100 A MSE 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale5 A C MSE 100 A MSE 70 1_555 A N GLN 101 A GLN 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale6 A C PHE 112 A PHE 82 1_555 A N MSE 113 A MSE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale7 A C MSE 113 A MSE 83 1_555 A N ASP 114 A ASP 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale8 A C TYR 211 A TYR 181 1_555 A N MSE 212 A MSE 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale9 A C MSE 212 A MSE 182 1_555 A N GLU 213 A GLU 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale10 B C MSE 31 B MSE 1 1_555 B N ILE 32 B ILE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale11 B C LYS 89 B LYS 59 1_555 B N MSE 90 B MSE 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale12 B C MSE 90 B MSE 60 1_555 B N PRO 91 B PRO 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? 
covale ? covale13 B C ASP 99 B ASP 69 1_555 B N MSE 100 B MSE 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale14 B C MSE 100 B MSE 70 1_555 B N GLN 101 B GLN 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale15 B C PHE 112 B PHE 82 1_555 B N MSE 113 B MSE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale16 B C MSE 113 B MSE 83 1_555 B N ASP 114 B ASP 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale17 B C TYR 211 B TYR 181 1_555 B N MSE 212 B MSE 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale18 B C MSE 212 B MSE 182 1_555 B N GLU 213 B GLU 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
#
_chem_comp.formula           ? 
_chem_comp.formula_weight    ? 
_chem_comp.id                UNX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'UNKNOWN ATOM OR ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1YBY 
_atom_sites.fract_transf_matrix[1][1]    0.0087 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.0052 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.0132 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 UNX A 1 1004 1004 UNX UNX . 
D 2 UNX A 1 1005 1005 UNX UNX . 
E 2 UNX B 1 1001 1001 UNX UNX . 
F 2 UNX B 1 1002 1002 UNX UNX . 
G 2 UNX B 1 1003 1003 UNX UNX . 
H 3 HOH A 1 201 201 HOH HOH . 
H 3 HOH A 2 202 202 HOH HOH . 
H 3 HOH A 3 204 204 HOH HOH . 
H 3 HOH A 4 206 206 HOH HOH . 
H 3 HOH A 5 210 210 HOH HOH . 
H 3 HOH A 6 211 211 HOH HOH . 
H 3 HOH A 7 214 214 HOH HOH . 
H 3 HOH A 8 217 217 HOH HOH . 
H 3 HOH A 9 218 218 HOH HOH . 
H 3 HOH A 10 222 222 HOH HOH . 
H 3 HOH A 11 223 223 HOH HOH . 
H 3 HOH A 12 224 224 HOH HOH . 
H 3 HOH A 13 225 225 HOH HOH . 
H 3 HOH A 14 228 228 HOH HOH . 
H 3 HOH A 15 230 230 HOH HOH . 
H 3 HOH A 16 233 233 HOH HOH . 
H 3 HOH A 17 234 234 HOH HOH . 
H 3 HOH A 18 235 235 HOH HOH . 
H 3 HOH A 19 236 236 HOH HOH . 
H 3 HOH A 20 238 238 HOH HOH . 
H 3 HOH A 21 239 239 HOH HOH . 
H 3 HOH A 22 242 242 HOH HOH . 
H 3 HOH A 23 243 243 HOH HOH . 
H 3 HOH A 24 244 244 HOH HOH . 
H 3 HOH A 25 246 246 HOH HOH . 
H 3 HOH A 26 247 247 HOH HOH . 
H 3 HOH A 27 248 248 HOH HOH . 
H 3 HOH A 28 250 250 HOH HOH . 
H 3 HOH A 29 252 252 HOH HOH . 
H 3 HOH A 30 253 253 HOH HOH . 
H 3 HOH A 31 254 254 HOH HOH . 
H 3 HOH A 32 255 255 HOH HOH . 
H 3 HOH A 33 260 260 HOH HOH . 
H 3 HOH A 34 261 261 HOH HOH . 
H 3 HOH A 35 262 262 HOH HOH . 
H 3 HOH A 36 263 263 HOH HOH . 
H 3 HOH A 37 264 264 HOH HOH . 
H 3 HOH A 38 265 265 HOH HOH . 
H 3 HOH A 39 268 268 HOH HOH . 
H 3 HOH A 40 269 269 HOH HOH . 
H 3 HOH A 41 270 270 HOH HOH . 
H 3 HOH A 42 271 271 HOH HOH . 
H 3 HOH A 43 275 275 HOH HOH . 
H 3 HOH A 44 277 277 HOH HOH . 
H 3 HOH A 45 278 278 HOH HOH . 
H 3 HOH A 46 279 279 HOH HOH . 
H 3 HOH A 47 280 280 HOH HOH . 
H 3 HOH A 48 281 281 HOH HOH . 
H 3 HOH A 49 282 282 HOH HOH . 
H 3 HOH A 50 284 284 HOH HOH . 
H 3 HOH A 51 285 285 HOH HOH . 
H 3 HOH A 52 288 288 HOH HOH . 
H 3 HOH A 53 289 289 HOH HOH . 
H 3 HOH A 54 290 290 HOH HOH . 
H 3 HOH A 55 291 291 HOH HOH . 
H 3 HOH A 56 293 293 HOH HOH . 
H 3 HOH A 57 295 295 HOH HOH . 
H 3 HOH A 58 296 296 HOH HOH . 
H 3 HOH A 59 298 298 HOH HOH . 
H 3 HOH A 60 300 300 HOH HOH . 
H 3 HOH A 61 302 302 HOH HOH . 
H 3 HOH A 62 303 303 HOH HOH . 
H 3 HOH A 63 304 304 HOH HOH . 
H 3 HOH A 64 306 306 HOH HOH . 
H 3 HOH A 65 315 315 HOH HOH . 
H 3 HOH A 66 317 317 HOH HOH . 
H 3 HOH A 67 318 318 HOH HOH . 
H 3 HOH A 68 319 319 HOH HOH . 
H 3 HOH A 69 320 320 HOH HOH . 
H 3 HOH A 70 327 327 HOH HOH . 
H 3 HOH A 71 328 328 HOH HOH . 
H 3 HOH A 72 329 329 HOH HOH . 
H 3 HOH A 73 334 334 HOH HOH . 
H 3 HOH A 74 337 337 HOH HOH . 
H 3 HOH A 75 338 338 HOH HOH . 
H 3 HOH A 76 339 339 HOH HOH . 
H 3 HOH A 77 341 341 HOH HOH . 
H 3 HOH A 78 342 342 HOH HOH . 
H 3 HOH A 79 343 343 HOH HOH . 
H 3 HOH A 80 348 348 HOH HOH . 
H 3 HOH A 81 349 349 HOH HOH . 
H 3 HOH A 82 350 350 HOH HOH . 
H 3 HOH A 83 351 351 HOH HOH . 
H 3 HOH A 84 352 352 HOH HOH . 
H 3 HOH A 85 353 353 HOH HOH . 
H 3 HOH A 86 354 354 HOH HOH . 
H 3 HOH A 87 359 359 HOH HOH . 
H 3 HOH A 88 360 360 HOH HOH . 
H 3 HOH A 89 367 367 HOH HOH . 
H 3 HOH A 90 368 368 HOH HOH . 
H 3 HOH A 91 370 370 HOH HOH . 
H 3 HOH A 92 371 371 HOH HOH . 
H 3 HOH A 93 373 373 HOH HOH . 
H 3 HOH A 94 375 375 HOH HOH . 
H 3 HOH A 95 379 379 HOH HOH . 
H 3 HOH A 96 380 380 HOH HOH . 
H 3 HOH A 97 381 381 HOH HOH . 
H 3 HOH A 98 383 383 HOH HOH . 
H 3 HOH A 99 384 384 HOH HOH . 
H 3 HOH A 100 385 385 HOH HOH . 
H 3 HOH A 101 387 387 HOH HOH . 
H 3 HOH A 102 388 388 HOH HOH . 
H 3 HOH A 103 390 390 HOH HOH . 
H 3 HOH A 104 392 392 HOH HOH . 
H 3 HOH A 105 395 395 HOH HOH . 
H 3 HOH A 106 397 397 HOH HOH . 
H 3 HOH A 107 398 398 HOH HOH . 
I 3 HOH B 1 203 203 HOH HOH . 
I 3 HOH B 2 205 205 HOH HOH . 
I 3 HOH B 3 207 207 HOH HOH . 
I 3 HOH B 4 208 208 HOH HOH . 
I 3 HOH B 5 209 209 HOH HOH . 
I 3 HOH B 6 212 212 HOH HOH . 
I 3 HOH B 7 213 213 HOH HOH . 
I 3 HOH B 8 215 215 HOH HOH . 
I 3 HOH B 9 216 216 HOH HOH . 
I 3 HOH B 10 219 219 HOH HOH . 
I 3 HOH B 11 220 220 HOH HOH . 
I 3 HOH B 12 221 221 HOH HOH . 
I 3 HOH B 13 226 226 HOH HOH . 
I 3 HOH B 14 227 227 HOH HOH . 
I 3 HOH B 15 229 229 HOH HOH . 
I 3 HOH B 16 231 231 HOH HOH . 
I 3 HOH B 17 232 232 HOH HOH . 
I 3 HOH B 18 237 237 HOH HOH . 
I 3 HOH B 19 240 240 HOH HOH . 
I 3 HOH B 20 241 241 HOH HOH . 
I 3 HOH B 21 245 245 HOH HOH . 
I 3 HOH B 22 249 249 HOH HOH . 
I 3 HOH B 23 251 251 HOH HOH . 
I 3 HOH B 24 256 256 HOH HOH . 
I 3 HOH B 25 257 257 HOH HOH . 
I 3 HOH B 26 258 258 HOH HOH . 
I 3 HOH B 27 259 259 HOH HOH . 
I 3 HOH B 28 266 266 HOH HOH . 
I 3 HOH B 29 267 267 HOH HOH . 
I 3 HOH B 30 272 272 HOH HOH . 
I 3 HOH B 31 273 273 HOH HOH . 
I 3 HOH B 32 274 274 HOH HOH . 
I 3 HOH B 33 276 276 HOH HOH . 
I 3 HOH B 34 283 283 HOH HOH . 
I 3 HOH B 35 286 286 HOH HOH . 
I 3 HOH B 36 287 287 HOH HOH . 
I 3 HOH B 37 292 292 HOH HOH . 
I 3 HOH B 38 294 294 HOH HOH . 
I 3 HOH B 39 297 297 HOH HOH . 
I 3 HOH B 40 299 299 HOH HOH . 
I 3 HOH B 41 301 301 HOH HOH . 
I 3 HOH B 42 305 305 HOH HOH . 
I 3 HOH B 43 307 307 HOH HOH . 
I 3 HOH B 44 308 308 HOH HOH . 
I 3 HOH B 45 309 309 HOH HOH . 
I 3 HOH B 46 310 310 HOH HOH . 
I 3 HOH B 47 311 311 HOH HOH . 
I 3 HOH B 48 312 312 HOH HOH . 
I 3 HOH B 49 313 313 HOH HOH . 
I 3 HOH B 50 314 314 HOH HOH . 
I 3 HOH B 51 316 316 HOH HOH . 
I 3 HOH B 52 321 321 HOH HOH . 
I 3 HOH B 53 322 322 HOH HOH . 
I 3 HOH B 54 323 323 HOH HOH . 
I 3 HOH B 55 324 324 HOH HOH . 
I 3 HOH B 56 325 325 HOH HOH . 
I 3 HOH B 57 326 326 HOH HOH . 
I 3 HOH B 58 330 330 HOH HOH . 
I 3 HOH B 59 331 331 HOH HOH . 
I 3 HOH B 60 332 332 HOH HOH . 
I 3 HOH B 61 333 333 HOH HOH . 
I 3 HOH B 62 335 335 HOH HOH . 
I 3 HOH B 63 336 336 HOH HOH . 
I 3 HOH B 64 340 340 HOH HOH . 
I 3 HOH B 65 344 344 HOH HOH . 
I 3 HOH B 66 345 345 HOH HOH . 
I 3 HOH B 67 346 346 HOH HOH . 
I 3 HOH B 68 347 347 HOH HOH . 
I 3 HOH B 69 355 355 HOH HOH . 
I 3 HOH B 70 356 356 HOH HOH . 
I 3 HOH B 71 357 357 HOH HOH . 
I 3 HOH B 72 358 358 HOH HOH . 
I 3 HOH B 73 361 361 HOH HOH . 
I 3 HOH B 74 362 362 HOH HOH . 
I 3 HOH B 75 363 363 HOH HOH . 
I 3 HOH B 76 364 364 HOH HOH . 
I 3 HOH B 77 365 365 HOH HOH . 
I 3 HOH B 78 366 366 HOH HOH . 
I 3 HOH B 79 369 369 HOH HOH . 
I 3 HOH B 80 372 372 HOH HOH . 
I 3 HOH B 81 374 374 HOH HOH . 
I 3 HOH B 82 376 376 HOH HOH . 
I 3 HOH B 83 377 377 HOH HOH . 
I 3 HOH B 84 378 378 HOH HOH . 
I 3 HOH B 85 382 382 HOH HOH . 
I 3 HOH B 86 386 386 HOH HOH . 
I 3 HOH B 87 389 389 HOH HOH . 
I 3 HOH B 88 391 391 HOH HOH . 
I 3 HOH B 89 393 393 HOH HOH . 
I 3 HOH B 90 394 394 HOH HOH . 
I 3 HOH B 91 396 396 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           X 
_atom_site.label_atom_id         UNK 
_atom_site.label_comp_id         UNX 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               27.971 
_atom_site.Cartn_y               71.651 
_atom_site.Cartn_z               14.102 
_atom_site.occupancy             0.01 
_atom_site.B_iso_or_equiv        2 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          UNK 
_atom_site.auth_comp_id          UNX 
_atom_site.auth_seq_id           1001 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#