data_1YC5 # _model_server_result.job_id 7wLXxsbEOo1LyvWrodHtyw _model_server_result.datetime_utc '2024-11-14 16:38:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yc5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2001}' # _entry.id 1YC5 # _exptl.entry_id 1YC5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.125 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1YC5 _cell.length_a 46.1 _cell.length_b 59.749 _cell.length_c 106.121 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YC5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C ZN ZN . A ZN 1001 1_555 A SG CYS 124 A CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc2 C ZN ZN . A ZN 1001 1_555 A SG CYS 151 A CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc3 C ZN ZN . A ZN 1001 1_555 A SG CYS 148 A CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc4 C ZN ZN . A ZN 1001 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? covale ? covale1 B C LYS 10 B LYS 381 1_555 B N ALY 11 B ALY 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 B C ALY 11 B ALY 382 1_555 B N LEU 12 B LEU 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'C6 H6 N2 O' _chem_comp.formula_weight 122.125 _chem_comp.id NCA _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1YC5 _atom_sites.fract_transf_matrix[1][1] 0.021692 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016737 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009423 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 1001 1001 ZN ZN . D 4 NCA A 1 2001 1 NCA NCA . E 5 HOH A 1 2002 1 HOH HOH . E 5 HOH A 2 2003 3 HOH HOH . E 5 HOH A 3 2004 4 HOH HOH . E 5 HOH A 4 2005 5 HOH HOH . E 5 HOH A 5 2006 6 HOH HOH . E 5 HOH A 6 2007 7 HOH HOH . E 5 HOH A 7 2008 8 HOH HOH . E 5 HOH A 8 2009 9 HOH HOH . E 5 HOH A 9 2010 10 HOH HOH . E 5 HOH A 10 2011 11 HOH HOH . E 5 HOH A 11 2012 12 HOH HOH . E 5 HOH A 12 2013 13 HOH HOH . E 5 HOH A 13 2014 14 HOH HOH . E 5 HOH A 14 2015 15 HOH HOH . E 5 HOH A 15 2016 16 HOH HOH . E 5 HOH A 16 2017 17 HOH HOH . E 5 HOH A 17 2018 18 HOH HOH . E 5 HOH A 18 2019 19 HOH HOH . E 5 HOH A 19 2020 20 HOH HOH . E 5 HOH A 20 2021 21 HOH HOH . E 5 HOH A 21 2022 22 HOH HOH . E 5 HOH A 22 2023 23 HOH HOH . E 5 HOH A 23 2024 24 HOH HOH . E 5 HOH A 24 2025 25 HOH HOH . E 5 HOH A 25 2026 26 HOH HOH . E 5 HOH A 26 2027 27 HOH HOH . E 5 HOH A 27 2028 28 HOH HOH . E 5 HOH A 28 2029 29 HOH HOH . E 5 HOH A 29 2030 30 HOH HOH . E 5 HOH A 30 2031 31 HOH HOH . E 5 HOH A 31 2032 32 HOH HOH . E 5 HOH A 32 2033 33 HOH HOH . E 5 HOH A 33 2034 34 HOH HOH . E 5 HOH A 34 2035 35 HOH HOH . E 5 HOH A 35 2036 36 HOH HOH . E 5 HOH A 36 2037 37 HOH HOH . E 5 HOH A 37 2038 38 HOH HOH . E 5 HOH A 38 2039 39 HOH HOH . E 5 HOH A 39 2040 40 HOH HOH . E 5 HOH A 40 2041 41 HOH HOH . E 5 HOH A 41 2042 42 HOH HOH . E 5 HOH A 42 2043 43 HOH HOH . E 5 HOH A 43 2044 45 HOH HOH . E 5 HOH A 44 2045 46 HOH HOH . E 5 HOH A 45 2046 48 HOH HOH . E 5 HOH A 46 2047 49 HOH HOH . E 5 HOH A 47 2048 51 HOH HOH . E 5 HOH A 48 2049 52 HOH HOH . E 5 HOH A 49 2050 53 HOH HOH . E 5 HOH A 50 2051 54 HOH HOH . E 5 HOH A 51 2052 55 HOH HOH . E 5 HOH A 52 2053 57 HOH HOH . E 5 HOH A 53 2054 58 HOH HOH . E 5 HOH A 54 2055 60 HOH HOH . E 5 HOH A 55 2056 61 HOH HOH . E 5 HOH A 56 2057 62 HOH HOH . E 5 HOH A 57 2058 63 HOH HOH . E 5 HOH A 58 2059 64 HOH HOH . E 5 HOH A 59 2060 65 HOH HOH . E 5 HOH A 60 2061 66 HOH HOH . E 5 HOH A 61 2062 67 HOH HOH . E 5 HOH A 62 2063 68 HOH HOH . E 5 HOH A 63 2064 69 HOH HOH . E 5 HOH A 64 2065 70 HOH HOH . E 5 HOH A 65 2066 71 HOH HOH . E 5 HOH A 66 2067 72 HOH HOH . E 5 HOH A 67 2068 73 HOH HOH . E 5 HOH A 68 2069 74 HOH HOH . E 5 HOH A 69 2070 75 HOH HOH . E 5 HOH A 70 2071 76 HOH HOH . E 5 HOH A 71 2072 77 HOH HOH . E 5 HOH A 72 2073 78 HOH HOH . E 5 HOH A 73 2074 79 HOH HOH . E 5 HOH A 74 2075 80 HOH HOH . E 5 HOH A 75 2076 81 HOH HOH . E 5 HOH A 76 2077 82 HOH HOH . E 5 HOH A 77 2078 83 HOH HOH . E 5 HOH A 78 2079 84 HOH HOH . E 5 HOH A 79 2080 85 HOH HOH . E 5 HOH A 80 2081 86 HOH HOH . E 5 HOH A 81 2082 87 HOH HOH . E 5 HOH A 82 2083 88 HOH HOH . E 5 HOH A 83 2084 90 HOH HOH . E 5 HOH A 84 2085 91 HOH HOH . E 5 HOH A 85 2086 93 HOH HOH . E 5 HOH A 86 2087 94 HOH HOH . E 5 HOH A 87 2088 95 HOH HOH . E 5 HOH A 88 2089 96 HOH HOH . E 5 HOH A 89 2090 98 HOH HOH . E 5 HOH A 90 2091 100 HOH HOH . E 5 HOH A 91 2092 101 HOH HOH . E 5 HOH A 92 2093 103 HOH HOH . E 5 HOH A 93 2094 104 HOH HOH . E 5 HOH A 94 2095 105 HOH HOH . E 5 HOH A 95 2096 106 HOH HOH . E 5 HOH A 96 2097 107 HOH HOH . E 5 HOH A 97 2098 108 HOH HOH . E 5 HOH A 98 2099 110 HOH HOH . E 5 HOH A 99 2100 111 HOH HOH . E 5 HOH A 100 2101 112 HOH HOH . E 5 HOH A 101 2102 114 HOH HOH . E 5 HOH A 102 2103 116 HOH HOH . E 5 HOH A 103 2104 117 HOH HOH . E 5 HOH A 104 2105 120 HOH HOH . E 5 HOH A 105 2106 122 HOH HOH . E 5 HOH A 106 2107 123 HOH HOH . E 5 HOH A 107 2108 124 HOH HOH . E 5 HOH A 108 2109 126 HOH HOH . E 5 HOH A 109 2110 128 HOH HOH . E 5 HOH A 110 2111 129 HOH HOH . E 5 HOH A 111 2112 131 HOH HOH . E 5 HOH A 112 2113 134 HOH HOH . E 5 HOH A 113 2114 136 HOH HOH . E 5 HOH A 114 2115 137 HOH HOH . E 5 HOH A 115 2116 138 HOH HOH . E 5 HOH A 116 2117 141 HOH HOH . E 5 HOH A 117 2118 143 HOH HOH . E 5 HOH A 118 2119 145 HOH HOH . E 5 HOH A 119 2120 146 HOH HOH . E 5 HOH A 120 2121 147 HOH HOH . E 5 HOH A 121 2122 149 HOH HOH . E 5 HOH A 122 2123 152 HOH HOH . E 5 HOH A 123 2124 153 HOH HOH . E 5 HOH A 124 2125 155 HOH HOH . E 5 HOH A 125 2126 158 HOH HOH . E 5 HOH A 126 2127 166 HOH HOH . E 5 HOH A 127 2128 168 HOH HOH . E 5 HOH A 128 2129 170 HOH HOH . E 5 HOH A 129 2130 172 HOH HOH . E 5 HOH A 130 2131 173 HOH HOH . E 5 HOH A 131 2132 174 HOH HOH . E 5 HOH A 132 2133 175 HOH HOH . E 5 HOH A 133 2134 176 HOH HOH . E 5 HOH A 134 2135 179 HOH HOH . E 5 HOH A 135 2136 183 HOH HOH . E 5 HOH A 136 2137 184 HOH HOH . E 5 HOH A 137 2138 189 HOH HOH . E 5 HOH A 138 2139 193 HOH HOH . E 5 HOH A 139 2140 194 HOH HOH . E 5 HOH A 140 2141 195 HOH HOH . E 5 HOH A 141 2142 196 HOH HOH . E 5 HOH A 142 2143 197 HOH HOH . E 5 HOH A 143 2144 198 HOH HOH . E 5 HOH A 144 2145 199 HOH HOH . E 5 HOH A 145 2146 200 HOH HOH . E 5 HOH A 146 2147 201 HOH HOH . E 5 HOH A 147 2148 202 HOH HOH . E 5 HOH A 148 2149 203 HOH HOH . E 5 HOH A 149 2150 204 HOH HOH . E 5 HOH A 150 2151 205 HOH HOH . E 5 HOH A 151 2152 206 HOH HOH . E 5 HOH A 152 2153 207 HOH HOH . E 5 HOH A 153 2154 208 HOH HOH . E 5 HOH A 154 2155 209 HOH HOH . E 5 HOH A 155 2156 210 HOH HOH . E 5 HOH A 156 2157 211 HOH HOH . E 5 HOH A 157 2158 212 HOH HOH . E 5 HOH A 158 2159 213 HOH HOH . E 5 HOH A 159 2160 216 HOH HOH . E 5 HOH A 160 2161 217 HOH HOH . E 5 HOH A 161 2162 218 HOH HOH . E 5 HOH A 162 2163 219 HOH HOH . E 5 HOH A 163 2164 220 HOH HOH . E 5 HOH A 164 2165 221 HOH HOH . E 5 HOH A 165 2166 222 HOH HOH . E 5 HOH A 166 2167 223 HOH HOH . E 5 HOH A 167 2168 224 HOH HOH . E 5 HOH A 168 2169 225 HOH HOH . E 5 HOH A 169 2170 226 HOH HOH . E 5 HOH A 170 2171 227 HOH HOH . E 5 HOH A 171 2172 230 HOH HOH . E 5 HOH A 172 2173 232 HOH HOH . E 5 HOH A 173 2174 233 HOH HOH . E 5 HOH A 174 2175 234 HOH HOH . E 5 HOH A 175 2176 235 HOH HOH . E 5 HOH A 176 2177 236 HOH HOH . E 5 HOH A 177 2178 237 HOH HOH . E 5 HOH A 178 2179 240 HOH HOH . E 5 HOH A 179 2180 241 HOH HOH . E 5 HOH A 180 2181 242 HOH HOH . E 5 HOH A 181 2182 243 HOH HOH . E 5 HOH A 182 2183 244 HOH HOH . E 5 HOH A 183 2184 245 HOH HOH . E 5 HOH A 184 2185 246 HOH HOH . E 5 HOH A 185 2186 247 HOH HOH . E 5 HOH A 186 2187 248 HOH HOH . E 5 HOH A 187 2188 249 HOH HOH . E 5 HOH A 188 2189 250 HOH HOH . E 5 HOH A 189 2190 251 HOH HOH . E 5 HOH A 190 2191 252 HOH HOH . E 5 HOH A 191 2192 253 HOH HOH . E 5 HOH A 192 2193 254 HOH HOH . E 5 HOH A 193 2194 256 HOH HOH . E 5 HOH A 194 2195 257 HOH HOH . E 5 HOH A 195 2196 258 HOH HOH . E 5 HOH A 196 2197 259 HOH HOH . E 5 HOH A 197 2198 260 HOH HOH . E 5 HOH A 198 2199 261 HOH HOH . E 5 HOH A 199 2200 262 HOH HOH . E 5 HOH A 200 2201 263 HOH HOH . E 5 HOH A 201 2202 267 HOH HOH . E 5 HOH A 202 2203 268 HOH HOH . E 5 HOH A 203 2204 269 HOH HOH . E 5 HOH A 204 2205 270 HOH HOH . E 5 HOH A 205 2206 271 HOH HOH . E 5 HOH A 206 2207 272 HOH HOH . E 5 HOH A 207 2208 273 HOH HOH . E 5 HOH A 208 2209 274 HOH HOH . E 5 HOH A 209 2210 275 HOH HOH . E 5 HOH A 210 2211 276 HOH HOH . E 5 HOH A 211 2212 277 HOH HOH . E 5 HOH A 212 2213 279 HOH HOH . E 5 HOH A 213 2214 281 HOH HOH . E 5 HOH A 214 2215 282 HOH HOH . E 5 HOH A 215 2216 284 HOH HOH . E 5 HOH A 216 2217 285 HOH HOH . E 5 HOH A 217 2218 287 HOH HOH . E 5 HOH A 218 2219 288 HOH HOH . E 5 HOH A 219 2220 289 HOH HOH . E 5 HOH A 220 2221 290 HOH HOH . E 5 HOH A 221 2222 291 HOH HOH . E 5 HOH A 222 2223 293 HOH HOH . E 5 HOH A 223 2224 294 HOH HOH . E 5 HOH A 224 2225 298 HOH HOH . E 5 HOH A 225 2226 299 HOH HOH . E 5 HOH A 226 2227 303 HOH HOH . E 5 HOH A 227 2228 306 HOH HOH . E 5 HOH A 228 2229 307 HOH HOH . E 5 HOH A 229 2230 309 HOH HOH . E 5 HOH A 230 2231 310 HOH HOH . E 5 HOH A 231 2232 312 HOH HOH . E 5 HOH A 232 2233 315 HOH HOH . E 5 HOH A 233 2234 316 HOH HOH . E 5 HOH A 234 2235 317 HOH HOH . E 5 HOH A 235 2236 319 HOH HOH . E 5 HOH A 236 2237 320 HOH HOH . E 5 HOH A 237 2238 321 HOH HOH . E 5 HOH A 238 2239 322 HOH HOH . E 5 HOH A 239 2240 325 HOH HOH . E 5 HOH A 240 2241 326 HOH HOH . E 5 HOH A 241 2242 327 HOH HOH . E 5 HOH A 242 2243 328 HOH HOH . E 5 HOH A 243 2244 329 HOH HOH . E 5 HOH A 244 2245 331 HOH HOH . E 5 HOH A 245 2246 332 HOH HOH . E 5 HOH A 246 2247 334 HOH HOH . E 5 HOH A 247 2248 335 HOH HOH . F 5 HOH B 1 44 44 HOH HOH . F 5 HOH B 2 50 50 HOH HOH . F 5 HOH B 3 59 59 HOH HOH . F 5 HOH B 4 89 89 HOH HOH . F 5 HOH B 5 97 97 HOH HOH . F 5 HOH B 6 99 99 HOH HOH . F 5 HOH B 7 109 109 HOH HOH . F 5 HOH B 8 132 132 HOH HOH . F 5 HOH B 9 133 133 HOH HOH . F 5 HOH B 10 144 144 HOH HOH . F 5 HOH B 11 165 165 HOH HOH . F 5 HOH B 12 215 215 HOH HOH . F 5 HOH B 13 229 229 HOH HOH . F 5 HOH B 14 231 231 HOH HOH . F 5 HOH B 15 238 238 HOH HOH . F 5 HOH B 16 255 255 HOH HOH . F 5 HOH B 17 265 265 HOH HOH . F 5 HOH B 18 311 311 HOH HOH . F 5 HOH B 19 314 314 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 NCA . . . D 4 5.701 24.69 10.151 1 18.27 ? N1 NCA 2001 A 1 HETATM 2 C C2 NCA . . . D 4 4.729 24.218 9.333 1 18.24 ? C2 NCA 2001 A 1 HETATM 3 C C3 NCA . . . D 4 3.421 24.056 9.801 1 15.9 ? C3 NCA 2001 A 1 HETATM 4 C C4 NCA . . . D 4 3.108 24.395 11.123 1 18.06 ? C4 NCA 2001 A 1 HETATM 5 C C5 NCA . . . D 4 4.102 24.88 11.972 1 17.58 ? C5 NCA 2001 A 1 HETATM 6 C C6 NCA . . . D 4 5.471 25.018 11.429 1 17.65 ? C6 NCA 2001 A 1 HETATM 7 C C7 NCA . . . D 4 2.342 23.536 8.897 1 14.18 ? C7 NCA 2001 A 1 HETATM 8 O O7 NCA . . . D 4 1.191 23.45 9.309 1 12.16 ? O7 NCA 2001 A 1 HETATM 9 N N7 NCA . . . D 4 2.663 23.156 7.659 1 12.36 ? N7 NCA 2001 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 9 #