data_1YCA # _model_server_result.job_id A1TfWSHrwbLFquMzsWFqHg _model_server_result.datetime_utc '2024-11-08 07:34:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yca # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":155}' # _entry.id 1YCA # _exptl.entry_id 1YCA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 28.01 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CARBON MONOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.2 _cell.angle_gamma 90 _cell.entry_id 1YCA _cell.length_a 124.2 _cell.length_b 42.5 _cell.length_c 92.1 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YCA _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 93 A HIS 93 1_555 C FE HEM . A HEM 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc2 C FE HEM . A HEM 154 1_555 D C CMO . A CMO 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.789 ? metalc ? metalc3 C FE HEM . A HEM 154 1_555 D O CMO . A CMO 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.006 ? metalc ? metalc4 B NE2 HIS 93 B HIS 93 1_555 E FE HEM . B HEM 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc5 E FE HEM . B HEM 154 1_555 F C CMO . B CMO 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.818 ? metalc ? metalc6 E FE HEM . B HEM 154 1_555 F O CMO . B CMO 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.984 ? # _chem_comp.formula 'C O' _chem_comp.formula_weight 28.01 _chem_comp.id CMO _chem_comp.mon_nstd_flag . _chem_comp.name 'CARBON MONOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _chem_comp_bond.atom_id_1 C _chem_comp_bond.atom_id_2 O _chem_comp_bond.comp_id CMO _chem_comp_bond.value_order trip _chem_comp_bond.pdbx_ordinal 70 _chem_comp_bond.pdbx_stereo_config n _chem_comp_bond.pdbx_aromatic_flag n # _atom_sites.entry_id 1YCA _atom_sites.fract_transf_matrix[1][1] 0.008052 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000309 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023529 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010866 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 154 154 HEM HEM . D 3 CMO A 1 155 154 CMO HEM . E 2 HEM B 1 154 154 HEM HEM . F 3 CMO B 1 155 154 CMO HEM . G 4 HOH A 1 156 1 HOH HOH . G 4 HOH A 2 157 2 HOH HOH . G 4 HOH A 3 158 3 HOH HOH . G 4 HOH A 4 159 4 HOH HOH . G 4 HOH A 5 160 11 HOH HOH . G 4 HOH A 6 161 1 HOH HOH . G 4 HOH A 7 162 2 HOH HOH . G 4 HOH A 8 163 3 HOH HOH . G 4 HOH A 9 164 4 HOH HOH . G 4 HOH A 10 165 5 HOH HOH . G 4 HOH A 11 166 6 HOH HOH . G 4 HOH A 12 167 7 HOH HOH . G 4 HOH A 13 168 8 HOH HOH . G 4 HOH A 14 169 9 HOH HOH . G 4 HOH A 15 170 10 HOH HOH . G 4 HOH A 16 171 11 HOH HOH . G 4 HOH A 17 172 12 HOH HOH . G 4 HOH A 18 173 13 HOH HOH . G 4 HOH A 19 174 14 HOH HOH . G 4 HOH A 20 175 15 HOH HOH . G 4 HOH A 21 176 16 HOH HOH . G 4 HOH A 22 177 17 HOH HOH . G 4 HOH A 23 178 18 HOH HOH . G 4 HOH A 24 179 19 HOH HOH . G 4 HOH A 25 180 20 HOH HOH . G 4 HOH A 26 181 21 HOH HOH . G 4 HOH A 27 182 22 HOH HOH . G 4 HOH A 28 183 23 HOH HOH . G 4 HOH A 29 184 24 HOH HOH . G 4 HOH A 30 185 25 HOH HOH . G 4 HOH A 31 186 26 HOH HOH . G 4 HOH A 32 187 27 HOH HOH . G 4 HOH A 33 188 28 HOH HOH . G 4 HOH A 34 189 29 HOH HOH . G 4 HOH A 35 190 30 HOH HOH . G 4 HOH A 36 191 31 HOH HOH . G 4 HOH A 37 192 32 HOH HOH . G 4 HOH A 38 193 33 HOH HOH . G 4 HOH A 39 194 34 HOH HOH . G 4 HOH A 40 195 35 HOH HOH . G 4 HOH A 41 196 36 HOH HOH . G 4 HOH A 42 197 37 HOH HOH . G 4 HOH A 43 198 38 HOH HOH . G 4 HOH A 44 199 39 HOH HOH . G 4 HOH A 45 200 40 HOH HOH . G 4 HOH A 46 201 41 HOH HOH . G 4 HOH A 47 202 42 HOH HOH . G 4 HOH A 48 203 43 HOH HOH . G 4 HOH A 49 204 44 HOH HOH . H 4 HOH B 1 156 5 HOH HOH . H 4 HOH B 2 157 6 HOH HOH . H 4 HOH B 3 158 7 HOH HOH . H 4 HOH B 4 159 8 HOH HOH . H 4 HOH B 5 160 9 HOH HOH . H 4 HOH B 6 161 10 HOH HOH . H 4 HOH B 7 162 12 HOH HOH . H 4 HOH B 8 163 1 HOH HOH . H 4 HOH B 9 164 2 HOH HOH . H 4 HOH B 10 165 3 HOH HOH . H 4 HOH B 11 166 4 HOH HOH . H 4 HOH B 12 167 5 HOH HOH . H 4 HOH B 13 168 6 HOH HOH . H 4 HOH B 14 169 7 HOH HOH . H 4 HOH B 15 170 8 HOH HOH . H 4 HOH B 16 171 9 HOH HOH . H 4 HOH B 17 172 10 HOH HOH . H 4 HOH B 18 173 11 HOH HOH . H 4 HOH B 19 174 12 HOH HOH . H 4 HOH B 20 175 13 HOH HOH . H 4 HOH B 21 176 14 HOH HOH . H 4 HOH B 22 177 15 HOH HOH . H 4 HOH B 23 178 16 HOH HOH . H 4 HOH B 24 179 17 HOH HOH . H 4 HOH B 25 180 18 HOH HOH . H 4 HOH B 26 181 19 HOH HOH . H 4 HOH B 27 182 20 HOH HOH . H 4 HOH B 28 183 21 HOH HOH . H 4 HOH B 29 184 22 HOH HOH . H 4 HOH B 30 185 23 HOH HOH . H 4 HOH B 31 186 24 HOH HOH . H 4 HOH B 32 187 25 HOH HOH . H 4 HOH B 33 188 26 HOH HOH . H 4 HOH B 34 189 27 HOH HOH . H 4 HOH B 35 190 28 HOH HOH . H 4 HOH B 36 191 29 HOH HOH . H 4 HOH B 37 192 30 HOH HOH . H 4 HOH B 38 193 31 HOH HOH . H 4 HOH B 39 194 32 HOH HOH . H 4 HOH B 40 195 33 HOH HOH . H 4 HOH B 41 196 34 HOH HOH . H 4 HOH B 42 197 35 HOH HOH . H 4 HOH B 43 198 36 HOH HOH . H 4 HOH B 44 199 37 HOH HOH . H 4 HOH B 45 200 38 HOH HOH . H 4 HOH B 46 201 39 HOH HOH . H 4 HOH B 47 202 40 HOH HOH . H 4 HOH B 48 203 41 HOH HOH . H 4 HOH B 49 204 42 HOH HOH . H 4 HOH B 50 205 43 HOH HOH . H 4 HOH B 51 206 44 HOH HOH . H 4 HOH B 52 207 45 HOH HOH . H 4 HOH B 53 208 46 HOH HOH . H 4 HOH B 54 209 47 HOH HOH . H 4 HOH B 55 210 48 HOH HOH . H 4 HOH B 56 211 49 HOH HOH . H 4 HOH B 57 212 50 HOH HOH . H 4 HOH B 58 213 51 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C CMO . . . D 3 45.098 -16.481 51.444 1 16 ? C CMO 155 A 1 HETATM 2 O O CMO . . . D 3 46.001 -16.09 52.223 1 18.49 ? O CMO 155 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 53 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 372 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 2 #