data_1YCL # _model_server_result.job_id -75ISjGX6H5f8Dm73lU4cw _model_server_result.datetime_utc '2024-11-18 08:39:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ycl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 1YCL # _exptl.entry_id 1YCL _exptl.method 'X-RAY DIFFRACTION' # _entity.details 'Chemical Synthesis' _entity.formula_weight 58.933 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COBALT (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1YCL _cell.length_a 62.53 _cell.length_b 62.53 _cell.length_c 149.65 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YCL _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_564 x,x-y+1,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -31.265 54.152568 -24.941667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 53 A HIS 54 1_555 B CO CO . A CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc2 A NE2 HIS 57 A HIS 58 1_555 B CO CO . A CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc3 A SG CYS 125 A CYS 126 1_555 B CO CO . A CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc4 D O2 KRI . A KRI 401 1_555 B CO CO . A CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? # _chem_comp.formula 'Co 2' _chem_comp.formula_weight 58.933 _chem_comp.id CO _chem_comp.mon_nstd_flag . _chem_comp.name 'COBALT (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1YCL _atom_sites.fract_transf_matrix[1][1] 0.015992 _atom_sites.fract_transf_matrix[1][2] 0.009233 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018466 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006682 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CO A 1 501 501 CO CO2 . C 3 SO4 A 1 601 601 SO4 SO4 . D 4 KRI A 1 401 401 KRI KRI . E 5 HOH A 1 200 200 HOH WAT . E 5 HOH A 2 201 201 HOH WAT . E 5 HOH A 3 202 202 HOH WAT . E 5 HOH A 4 203 203 HOH WAT . E 5 HOH A 5 204 204 HOH WAT . E 5 HOH A 6 205 205 HOH WAT . E 5 HOH A 7 206 206 HOH WAT . E 5 HOH A 8 207 207 HOH WAT . E 5 HOH A 9 208 208 HOH WAT . E 5 HOH A 10 209 209 HOH WAT . E 5 HOH A 11 210 210 HOH WAT . E 5 HOH A 12 211 211 HOH WAT . E 5 HOH A 13 212 212 HOH WAT . E 5 HOH A 14 213 213 HOH WAT . E 5 HOH A 15 214 214 HOH WAT . E 5 HOH A 16 215 215 HOH WAT . E 5 HOH A 17 216 216 HOH WAT . E 5 HOH A 18 217 217 HOH WAT . E 5 HOH A 19 218 218 HOH WAT . E 5 HOH A 20 219 219 HOH WAT . E 5 HOH A 21 220 220 HOH WAT . E 5 HOH A 22 221 221 HOH WAT . E 5 HOH A 23 222 222 HOH WAT . E 5 HOH A 24 223 223 HOH WAT . E 5 HOH A 25 224 224 HOH WAT . E 5 HOH A 26 225 225 HOH WAT . E 5 HOH A 27 226 226 HOH WAT . E 5 HOH A 28 227 227 HOH WAT . E 5 HOH A 29 228 228 HOH WAT . E 5 HOH A 30 229 229 HOH WAT . E 5 HOH A 31 230 230 HOH WAT . E 5 HOH A 32 231 231 HOH WAT . E 5 HOH A 33 232 232 HOH WAT . E 5 HOH A 34 233 233 HOH WAT . E 5 HOH A 35 234 234 HOH WAT . E 5 HOH A 36 235 235 HOH WAT . E 5 HOH A 37 236 236 HOH WAT . E 5 HOH A 38 237 237 HOH WAT . E 5 HOH A 39 238 238 HOH WAT . E 5 HOH A 40 239 239 HOH WAT . E 5 HOH A 41 240 240 HOH WAT . E 5 HOH A 42 241 241 HOH WAT . E 5 HOH A 43 242 242 HOH WAT . E 5 HOH A 44 243 243 HOH WAT . E 5 HOH A 45 244 244 HOH WAT . E 5 HOH A 46 245 245 HOH WAT . E 5 HOH A 47 246 246 HOH WAT . E 5 HOH A 48 247 247 HOH WAT . E 5 HOH A 49 248 248 HOH WAT . E 5 HOH A 50 249 249 HOH WAT . E 5 HOH A 51 250 250 HOH WAT . E 5 HOH A 52 251 251 HOH WAT . E 5 HOH A 53 252 252 HOH WAT . E 5 HOH A 54 253 253 HOH WAT . E 5 HOH A 55 254 254 HOH WAT . E 5 HOH A 56 255 255 HOH WAT . E 5 HOH A 57 256 256 HOH WAT . E 5 HOH A 58 257 257 HOH WAT . E 5 HOH A 59 258 258 HOH WAT . E 5 HOH A 60 259 259 HOH WAT . E 5 HOH A 61 260 260 HOH WAT . E 5 HOH A 62 261 261 HOH WAT . E 5 HOH A 63 262 262 HOH WAT . E 5 HOH A 64 263 263 HOH WAT . E 5 HOH A 65 264 264 HOH WAT . E 5 HOH A 66 265 265 HOH WAT . E 5 HOH A 67 266 266 HOH WAT . E 5 HOH A 68 267 267 HOH WAT . E 5 HOH A 69 268 268 HOH WAT . E 5 HOH A 70 269 269 HOH WAT . E 5 HOH A 71 270 270 HOH WAT . E 5 HOH A 72 271 271 HOH WAT . E 5 HOH A 73 272 272 HOH WAT . E 5 HOH A 74 273 273 HOH WAT . E 5 HOH A 75 274 274 HOH WAT . E 5 HOH A 76 275 275 HOH WAT . E 5 HOH A 77 276 276 HOH WAT . E 5 HOH A 78 277 277 HOH WAT . E 5 HOH A 79 278 278 HOH WAT . E 5 HOH A 80 279 279 HOH WAT . E 5 HOH A 81 280 280 HOH WAT . E 5 HOH A 82 281 281 HOH WAT . E 5 HOH A 83 282 282 HOH WAT . E 5 HOH A 84 283 283 HOH WAT . E 5 HOH A 85 284 284 HOH WAT . E 5 HOH A 86 285 285 HOH WAT . E 5 HOH A 87 286 286 HOH WAT . E 5 HOH A 88 287 287 HOH WAT . E 5 HOH A 89 288 288 HOH WAT . E 5 HOH A 90 289 289 HOH WAT . E 5 HOH A 91 290 290 HOH WAT . E 5 HOH A 92 291 291 HOH WAT . E 5 HOH A 93 292 292 HOH WAT . E 5 HOH A 94 293 293 HOH WAT . E 5 HOH A 95 294 294 HOH WAT . E 5 HOH A 96 295 295 HOH WAT . E 5 HOH A 97 296 296 HOH WAT . E 5 HOH A 98 297 297 HOH WAT . E 5 HOH A 99 298 298 HOH WAT . E 5 HOH A 100 299 299 HOH WAT . E 5 HOH A 101 300 300 HOH WAT . E 5 HOH A 102 301 301 HOH WAT . E 5 HOH A 103 302 302 HOH WAT . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CO _atom_site.label_atom_id CO _atom_site.label_comp_id CO _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -28.499 _atom_site.Cartn_y 30.073 _atom_site.Cartn_z -18.107 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 33.76 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CO _atom_site.auth_comp_id CO _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #