data_1YCM # _model_server_result.job_id S8E-lpclf7fla7bvIiyrCg _model_server_result.datetime_utc '2025-07-15 08:18:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ycm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":269}' # _entry.id 1YCM # _exptl.entry_id 1YCM _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 316.373 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-ISOBUTYL-N-[4-METHOXYPHENYLSULFONYL]GLYCYL HYDROXAMIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1YCM _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YCM _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 18 A THR 122 1_555 D CA CA . A CA 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc2 A OD2 ASP 20 A ASP 124 1_555 D CA CA . A CA 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc3 A OD1 ASP 20 A ASP 124 1_555 D CA CA . A CA 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.81 ? metalc ? metalc4 A NE2 HIS 64 A HIS 168 1_555 C ZN ZN . A ZN 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc5 A OD1 ASP 66 A ASP 170 1_555 C ZN ZN . A ZN 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 4.139 ? metalc ? metalc6 A OD2 ASP 66 A ASP 170 1_555 C ZN ZN . A ZN 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc7 A OD2 ASP 71 A ASP 175 1_555 E CA CA . A CA 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 4.356 ? metalc ? metalc8 A O ASP 71 A ASP 175 1_555 E CA CA . A CA 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc9 A OD1 ASP 71 A ASP 175 1_555 E CA CA . A CA 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc10 A O GLY 72 A GLY 176 1_555 E CA CA . A CA 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc11 A O GLY 74 A GLY 178 1_555 E CA CA . A CA 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc12 A O ILE 76 A ILE 180 1_555 E CA CA . A CA 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc13 A NE2 HIS 79 A HIS 183 1_555 C ZN ZN . A ZN 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc14 A O GLY 86 A GLY 190 1_555 F CA CA . A CA 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? metalc ? metalc15 A O GLY 88 A GLY 192 1_555 F CA CA . A CA 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc16 A OD2 ASP 90 A ASP 194 1_555 F CA CA . A CA 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? metalc ? metalc17 A OD1 ASP 90 A ASP 194 1_555 F CA CA . A CA 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc18 A ND1 HIS 92 A HIS 196 1_555 C ZN ZN . A ZN 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc19 A OD1 ASP 94 A ASP 198 1_555 E CA CA . A CA 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc20 A OD2 ASP 94 A ASP 198 1_555 E CA CA . A CA 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc21 A OE2 GLU 95 A GLU 199 1_555 D CA CA . A CA 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 4.422 ? metalc ? metalc22 A O GLU 95 A GLU 199 1_555 D CA CA . A CA 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc23 A OE1 GLU 95 A GLU 199 1_555 D CA CA . A CA 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc24 A O GLU 97 A GLU 201 1_555 D CA CA . A CA 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc25 A OE2 GLU 97 A GLU 201 1_555 E CA CA . A CA 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc26 A NE2 HIS 114 A HIS 218 1_555 B ZN ZN . A ZN 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc27 A NE2 HIS 118 A HIS 222 1_555 B ZN ZN . A ZN 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc28 A NE2 HIS 124 A HIS 228 1_555 B ZN ZN . A ZN 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc29 B ZN ZN . A ZN 264 1_555 G O4 NGH . A NGH 269 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.296 ? metalc ? metalc30 B ZN ZN . A ZN 264 1_555 G O5 NGH . A NGH 269 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.575 ? # _chem_comp.formula 'C13 H20 N2 O5 S' _chem_comp.formula_weight 316.373 _chem_comp.id NGH _chem_comp.mon_nstd_flag . _chem_comp.name 'N-ISOBUTYL-N-[4-METHOXYPHENYLSULFONYL]GLYCYL HYDROXAMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NGH doub 222 n y C1 C6 NGH sing 223 n y C1 H1 NGH sing 224 n n C2 C3 NGH sing 225 n y C2 H2 NGH sing 226 n n C3 C4 NGH doub 227 n y C3 O1 NGH sing 228 n n C4 C5 NGH sing 229 n y C4 H4 NGH sing 230 n n C5 C6 NGH doub 231 n y C5 H5 NGH sing 232 n n C6 S1 NGH sing 233 n n O1 C7 NGH sing 234 n n C7 H71 NGH sing 235 n n C7 H72 NGH sing 236 n n C7 H73 NGH sing 237 n n S1 O2 NGH doub 238 n n S1 O3 NGH doub 239 n n S1 N NGH sing 240 n n N C9 NGH sing 241 n n N C10 NGH sing 242 n n C9 C12 NGH sing 243 n n C9 H91 NGH sing 244 n n C9 H92 NGH sing 245 n n C10 C11 NGH sing 246 n n C10 H101 NGH sing 247 n n C10 H102 NGH sing 248 n n C11 N1 NGH sing 249 n n C11 O5 NGH doub 250 n n N1 O4 NGH sing 251 n n N1 HN1 NGH sing 252 n n O4 HO4 NGH sing 253 n n C12 C13 NGH sing 254 n n C12 C14 NGH sing 255 n n C12 H12 NGH sing 256 n n C13 H131 NGH sing 257 n n C13 H132 NGH sing 258 n n C13 H133 NGH sing 259 n n C14 H141 NGH sing 260 n n C14 H142 NGH sing 261 n n C14 H143 NGH sing 262 n n # _atom_sites.entry_id 1YCM _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 264 264 ZN ZN . C 2 ZN A 1 265 265 ZN ZN . D 3 CA A 1 266 266 CA CA . E 3 CA A 1 267 267 CA CA . F 3 CA A 1 268 268 CA CA . G 4 NGH A 1 269 269 NGH NGH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NGH . . . G 4 7.898 -3.923 -5.432 1 2.02 ? C1 NGH 269 A 1 HETATM 2 C C2 NGH . . . G 4 7.557 -3.751 -4.096 1 1.89 ? C2 NGH 269 A 1 HETATM 3 C C3 NGH . . . G 4 6.609 -4.6 -3.525 1 0.86 ? C3 NGH 269 A 1 HETATM 4 C C4 NGH . . . G 4 6.007 -5.608 -4.291 1 2.08 ? C4 NGH 269 A 1 HETATM 5 C C5 NGH . . . G 4 6.367 -5.753 -5.617 1 2.19 ? C5 NGH 269 A 1 HETATM 6 C C6 NGH . . . G 4 7.314 -4.92 -6.207 1 1.38 ? C6 NGH 269 A 1 HETATM 7 O O1 NGH . . . G 4 6.189 -4.571 -2.21 1 0.88 ? O1 NGH 269 A 1 HETATM 8 C C7 NGH . . . G 4 7.018 -3.918 -1.283 1 0.82 ? C7 NGH 269 A 1 HETATM 9 S S1 NGH . . . G 4 7.769 -5.173 -7.924 1 1.87 ? S1 NGH 269 A 1 HETATM 10 O O2 NGH . . . G 4 9.251 -5.227 -7.996 1 1.96 ? O2 NGH 269 A 1 HETATM 11 O O3 NGH . . . G 4 7.061 -6.365 -8.439 1 2.59 ? O3 NGH 269 A 1 HETATM 12 N N NGH . . . G 4 7.165 -3.693 -8.677 1 1.86 ? N NGH 269 A 1 HETATM 13 C C9 NGH . . . G 4 7.975 -2.861 -9.607 1 1.95 ? C9 NGH 269 A 1 HETATM 14 C C10 NGH . . . G 4 5.848 -3.114 -8.243 1 2.07 ? C10 NGH 269 A 1 HETATM 15 C C11 NGH . . . G 4 6.017 -2.015 -7.236 1 2.05 ? C11 NGH 269 A 1 HETATM 16 N N1 NGH . . . G 4 5.012 -1.459 -6.57 1 2.5 ? N1 NGH 269 A 1 HETATM 17 O O4 NGH . . . G 4 5.066 -0.441 -5.765 1 2.8 ? O4 NGH 269 A 1 HETATM 18 O O5 NGH . . . G 4 7.199 -1.539 -7.093 1 1.97 ? O5 NGH 269 A 1 HETATM 19 C C12 NGH . . . G 4 8.407 -3.606 -10.878 1 2.52 ? C12 NGH 269 A 1 HETATM 20 C C13 NGH . . . G 4 9.851 -4.069 -10.793 1 3.03 ? C13 NGH 269 A 1 HETATM 21 C C14 NGH . . . G 4 8.236 -2.663 -12.06 1 2.91 ? C14 NGH 269 A 1 HETATM 22 H H1 NGH . . . G 4 8.646 -3.244 -5.881 1 3.29 ? H1 NGH 269 A 1 HETATM 23 H H2 NGH . . . G 4 8.038 -2.953 -3.522 1 3.15 ? H2 NGH 269 A 1 HETATM 24 H H4 NGH . . . G 4 5.26 -6.273 -3.847 1 3.34 ? H4 NGH 269 A 1 HETATM 25 H H5 NGH . . . G 4 5.895 -6.54 -6.219 1 3.47 ? H5 NGH 269 A 1 HETATM 26 H H71 NGH . . . G 4 7.721 -4.705 -1.001 1 1.32 ? H71 NGH 269 A 1 HETATM 27 H H72 NGH . . . G 4 6.462 -3.578 -0.402 1 1.57 ? H72 NGH 269 A 1 HETATM 28 H H73 NGH . . . G 4 7.558 -3.072 -1.724 1 1.13 ? H73 NGH 269 A 1 HETATM 29 H H91 NGH . . . G 4 8.859 -2.457 -9.079 1 1.91 ? H91 NGH 269 A 1 HETATM 30 H H92 NGH . . . G 4 7.299 -1.98 -9.892 1 2.27 ? H92 NGH 269 A 1 HETATM 31 H H101 NGH . . . G 4 5.208 -3.906 -7.808 1 2.42 ? H101 NGH 269 A 1 HETATM 32 H H102 NGH . . . G 4 5.328 -2.764 -9.161 1 2.44 ? H102 NGH 269 A 1 HETATM 33 H HN1 NGH . . . G 4 4.115 -1.86 -6.703 1 2.8 ? HN1 NGH 269 A 1 HETATM 34 H H12 NGH . . . G 4 7.754 -4.497 -11.045 1 2.89 ? H12 NGH 269 A 1 HETATM 35 H H131 NGH . . . G 4 10.252 -4.316 -11.788 1 3.55 ? H131 NGH 269 A 1 HETATM 36 H H132 NGH . . . G 4 10.498 -3.279 -10.381 1 3.08 ? H132 NGH 269 A 1 HETATM 37 H H133 NGH . . . G 4 9.955 -4.963 -10.164 1 3.34 ? H133 NGH 269 A 1 HETATM 38 H H141 NGH . . . G 4 8.357 -3.186 -13.014 1 3.52 ? H141 NGH 269 A 1 HETATM 39 H H142 NGH . . . G 4 7.23 -2.217 -12.066 1 3.05 ? H142 NGH 269 A 1 HETATM 40 H H143 NGH . . . G 4 8.965 -1.841 -12.032 1 2.97 ? H143 NGH 269 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 4925 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 40 #