data_1YCO # _model_server_result.job_id sPU3h8CG13X69k-sB4Bb2g _model_server_result.datetime_utc '2024-11-24 15:29:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yco # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":5001}' # _entry.id 1YCO # _exptl.entry_id 1YCO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1YCO _cell.length_a 61.165 _cell.length_b 61.165 _cell.length_c 317.995 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YCO _symmetry.cell_setting tetragonal _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 1YCO _atom_sites.fract_transf_matrix[1][1] 0.016349 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016349 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003145 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 5001 5001 PO4 PO4 . D 2 PO4 B 1 9001 9001 PO4 PO4 . E 3 HOH A 1 5002 1 HOH HOH . E 3 HOH A 2 5003 2 HOH HOH . E 3 HOH A 3 5004 3 HOH HOH . E 3 HOH A 4 5005 6 HOH HOH . E 3 HOH A 5 5006 7 HOH HOH . E 3 HOH A 6 5007 8 HOH HOH . E 3 HOH A 7 5008 10 HOH HOH . E 3 HOH A 8 5009 11 HOH HOH . E 3 HOH A 9 5010 16 HOH HOH . E 3 HOH A 10 5011 18 HOH HOH . E 3 HOH A 11 5012 19 HOH HOH . E 3 HOH A 12 5013 20 HOH HOH . E 3 HOH A 13 5014 21 HOH HOH . E 3 HOH A 14 5015 22 HOH HOH . E 3 HOH A 15 5016 25 HOH HOH . E 3 HOH A 16 5017 26 HOH HOH . E 3 HOH A 17 5018 27 HOH HOH . E 3 HOH A 18 5019 28 HOH HOH . E 3 HOH A 19 5020 30 HOH HOH . E 3 HOH A 20 5021 32 HOH HOH . E 3 HOH A 21 5022 33 HOH HOH . E 3 HOH A 22 5023 34 HOH HOH . E 3 HOH A 23 5024 37 HOH HOH . E 3 HOH A 24 5025 41 HOH HOH . E 3 HOH A 25 5026 49 HOH HOH . E 3 HOH A 26 5027 50 HOH HOH . E 3 HOH A 27 5028 51 HOH HOH . E 3 HOH A 28 5029 52 HOH HOH . E 3 HOH A 29 5030 53 HOH HOH . E 3 HOH A 30 5031 54 HOH HOH . E 3 HOH A 31 5032 55 HOH HOH . E 3 HOH A 32 5033 56 HOH HOH . E 3 HOH A 33 5034 57 HOH HOH . E 3 HOH A 34 5035 58 HOH HOH . E 3 HOH A 35 5036 59 HOH HOH . E 3 HOH A 36 5037 60 HOH HOH . E 3 HOH A 37 5038 61 HOH HOH . E 3 HOH A 38 5039 62 HOH HOH . E 3 HOH A 39 5040 64 HOH HOH . E 3 HOH A 40 5041 65 HOH HOH . E 3 HOH A 41 5042 66 HOH HOH . E 3 HOH A 42 5043 67 HOH HOH . E 3 HOH A 43 5044 70 HOH HOH . E 3 HOH A 44 5045 71 HOH HOH . E 3 HOH A 45 5046 72 HOH HOH . E 3 HOH A 46 5047 73 HOH HOH . E 3 HOH A 47 5048 74 HOH HOH . E 3 HOH A 48 5049 75 HOH HOH . E 3 HOH A 49 5050 91 HOH HOH . E 3 HOH A 50 5051 94 HOH HOH . E 3 HOH A 51 5052 95 HOH HOH . E 3 HOH A 52 5053 96 HOH HOH . E 3 HOH A 53 5054 97 HOH HOH . E 3 HOH A 54 5055 98 HOH HOH . E 3 HOH A 55 5056 100 HOH HOH . E 3 HOH A 56 5057 101 HOH HOH . E 3 HOH A 57 5058 104 HOH HOH . E 3 HOH A 58 5059 105 HOH HOH . E 3 HOH A 59 5060 106 HOH HOH . E 3 HOH A 60 5061 107 HOH HOH . E 3 HOH A 61 5062 109 HOH HOH . E 3 HOH A 62 5063 110 HOH HOH . E 3 HOH A 63 5064 111 HOH HOH . E 3 HOH A 64 5065 112 HOH HOH . E 3 HOH A 65 5066 113 HOH HOH . E 3 HOH A 66 5067 118 HOH HOH . E 3 HOH A 67 5068 119 HOH HOH . E 3 HOH A 68 5069 120 HOH HOH . E 3 HOH A 69 5070 124 HOH HOH . E 3 HOH A 70 5071 130 HOH HOH . E 3 HOH A 71 5072 131 HOH HOH . E 3 HOH A 72 5073 135 HOH HOH . E 3 HOH A 73 5074 136 HOH HOH . E 3 HOH A 74 5075 141 HOH HOH . E 3 HOH A 75 5076 142 HOH HOH . E 3 HOH A 76 5077 147 HOH HOH . E 3 HOH A 77 5078 152 HOH HOH . E 3 HOH A 78 5079 153 HOH HOH . E 3 HOH A 79 5080 154 HOH HOH . E 3 HOH A 80 5081 163 HOH HOH . E 3 HOH A 81 5082 164 HOH HOH . E 3 HOH A 82 5083 165 HOH HOH . E 3 HOH A 83 5084 166 HOH HOH . E 3 HOH A 84 5085 167 HOH HOH . E 3 HOH A 85 5086 168 HOH HOH . E 3 HOH A 86 5087 169 HOH HOH . E 3 HOH A 87 5088 170 HOH HOH . F 3 HOH B 1 9002 4 HOH HOH . F 3 HOH B 2 9003 5 HOH HOH . F 3 HOH B 3 9004 9 HOH HOH . F 3 HOH B 4 9005 12 HOH HOH . F 3 HOH B 5 9006 13 HOH HOH . F 3 HOH B 6 9007 14 HOH HOH . F 3 HOH B 7 9008 15 HOH HOH . F 3 HOH B 8 9009 17 HOH HOH . F 3 HOH B 9 9010 23 HOH HOH . F 3 HOH B 10 9011 24 HOH HOH . F 3 HOH B 11 9012 29 HOH HOH . F 3 HOH B 12 9013 31 HOH HOH . F 3 HOH B 13 9014 35 HOH HOH . F 3 HOH B 14 9015 36 HOH HOH . F 3 HOH B 15 9016 38 HOH HOH . F 3 HOH B 16 9017 39 HOH HOH . F 3 HOH B 17 9018 40 HOH HOH . F 3 HOH B 18 9019 42 HOH HOH . F 3 HOH B 19 9020 43 HOH HOH . F 3 HOH B 20 9021 44 HOH HOH . F 3 HOH B 21 9022 45 HOH HOH . F 3 HOH B 22 9023 46 HOH HOH . F 3 HOH B 23 9024 47 HOH HOH . F 3 HOH B 24 9025 48 HOH HOH . F 3 HOH B 25 9026 63 HOH HOH . F 3 HOH B 26 9027 68 HOH HOH . F 3 HOH B 27 9028 69 HOH HOH . F 3 HOH B 28 9029 76 HOH HOH . F 3 HOH B 29 9030 77 HOH HOH . F 3 HOH B 30 9031 78 HOH HOH . F 3 HOH B 31 9032 79 HOH HOH . F 3 HOH B 32 9033 80 HOH HOH . F 3 HOH B 33 9034 81 HOH HOH . F 3 HOH B 34 9035 82 HOH HOH . F 3 HOH B 35 9036 83 HOH HOH . F 3 HOH B 36 9037 84 HOH HOH . F 3 HOH B 37 9038 85 HOH HOH . F 3 HOH B 38 9039 86 HOH HOH . F 3 HOH B 39 9040 87 HOH HOH . F 3 HOH B 40 9041 88 HOH HOH . F 3 HOH B 41 9042 89 HOH HOH . F 3 HOH B 42 9043 90 HOH HOH . F 3 HOH B 43 9044 92 HOH HOH . F 3 HOH B 44 9045 93 HOH HOH . F 3 HOH B 45 9046 99 HOH HOH . F 3 HOH B 46 9047 102 HOH HOH . F 3 HOH B 47 9048 103 HOH HOH . F 3 HOH B 48 9049 108 HOH HOH . F 3 HOH B 49 9050 114 HOH HOH . F 3 HOH B 50 9051 115 HOH HOH . F 3 HOH B 51 9052 116 HOH HOH . F 3 HOH B 52 9053 117 HOH HOH . F 3 HOH B 53 9054 121 HOH HOH . F 3 HOH B 54 9055 122 HOH HOH . F 3 HOH B 55 9056 123 HOH HOH . F 3 HOH B 56 9057 125 HOH HOH . F 3 HOH B 57 9058 126 HOH HOH . F 3 HOH B 58 9059 127 HOH HOH . F 3 HOH B 59 9060 128 HOH HOH . F 3 HOH B 60 9061 129 HOH HOH . F 3 HOH B 61 9062 132 HOH HOH . F 3 HOH B 62 9063 133 HOH HOH . F 3 HOH B 63 9064 134 HOH HOH . F 3 HOH B 64 9065 137 HOH HOH . F 3 HOH B 65 9066 138 HOH HOH . F 3 HOH B 66 9067 139 HOH HOH . F 3 HOH B 67 9068 140 HOH HOH . F 3 HOH B 68 9069 143 HOH HOH . F 3 HOH B 69 9070 144 HOH HOH . F 3 HOH B 70 9071 145 HOH HOH . F 3 HOH B 71 9072 146 HOH HOH . F 3 HOH B 72 9073 148 HOH HOH . F 3 HOH B 73 9074 149 HOH HOH . F 3 HOH B 74 9075 150 HOH HOH . F 3 HOH B 75 9076 151 HOH HOH . F 3 HOH B 76 9077 155 HOH HOH . F 3 HOH B 77 9078 156 HOH HOH . F 3 HOH B 78 9079 157 HOH HOH . F 3 HOH B 79 9080 158 HOH HOH . F 3 HOH B 80 9081 159 HOH HOH . F 3 HOH B 81 9082 160 HOH HOH . F 3 HOH B 82 9083 161 HOH HOH . F 3 HOH B 83 9084 162 HOH HOH . F 3 HOH B 84 9085 171 HOH HOH . F 3 HOH B 85 9086 172 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . C 2 39.308 41.49 122.955 1 59.47 ? P PO4 5001 A 1 HETATM 2 O O1 PO4 . . . C 2 40.517 42.196 122.445 1 59.95 ? O1 PO4 5001 A 1 HETATM 3 O O2 PO4 . . . C 2 38.144 42.464 123.027 1 60.16 ? O2 PO4 5001 A 1 HETATM 4 O O3 PO4 . . . C 2 38.941 40.357 122.003 1 61.42 ? O3 PO4 5001 A 1 HETATM 5 O O4 PO4 . . . C 2 39.602 40.93 124.333 1 59.21 ? O4 PO4 5001 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #