data_1YCS # _model_server_result.job_id '_uNDU2xMBT2GKDo3MJ24Sg' _model_server_result.datetime_utc '2024-11-15 04:01:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ycs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 1YCS # _exptl.entry_id 1YCS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1YCS _cell.length_a 68.8 _cell.length_b 72.8 _cell.length_c 119 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YCS _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C ZN ZN . A ZN 1 1_555 A SG CYS 83 A CYS 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc2 C ZN ZN . A ZN 1 1_555 A ND1 HIS 86 A HIS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.888 ? metalc ? metalc3 C ZN ZN . A ZN 1 1_555 A SG CYS 145 A CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc4 C ZN ZN . A ZN 1 1_555 A SG CYS 149 A CYS 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1YCS _atom_sites.fract_transf_matrix[1][1] 0.014535 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013736 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008403 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 1 1 ZN ZN . D 4 HOH A 1 293 1 HOH HOH . D 4 HOH A 2 294 2 HOH HOH . D 4 HOH A 3 295 3 HOH HOH . D 4 HOH A 4 296 4 HOH HOH . D 4 HOH A 5 297 5 HOH HOH . D 4 HOH A 6 298 6 HOH HOH . D 4 HOH A 7 299 7 HOH HOH . D 4 HOH A 8 300 8 HOH HOH . D 4 HOH A 9 301 9 HOH HOH . D 4 HOH A 10 302 10 HOH HOH . D 4 HOH A 11 303 11 HOH HOH . D 4 HOH A 12 304 12 HOH HOH . D 4 HOH A 13 305 13 HOH HOH . D 4 HOH A 14 306 14 HOH HOH . D 4 HOH A 15 307 15 HOH HOH . D 4 HOH A 16 308 16 HOH HOH . D 4 HOH A 17 309 17 HOH HOH . D 4 HOH A 18 310 18 HOH HOH . D 4 HOH A 19 311 19 HOH HOH . D 4 HOH A 20 312 20 HOH HOH . D 4 HOH A 21 313 21 HOH HOH . D 4 HOH A 22 314 22 HOH HOH . D 4 HOH A 23 315 23 HOH HOH . D 4 HOH A 24 316 24 HOH HOH . D 4 HOH A 25 317 25 HOH HOH . D 4 HOH A 26 318 26 HOH HOH . D 4 HOH A 27 319 27 HOH HOH . D 4 HOH A 28 320 28 HOH HOH . D 4 HOH A 29 321 29 HOH HOH . D 4 HOH A 30 322 30 HOH HOH . D 4 HOH A 31 323 31 HOH HOH . D 4 HOH A 32 324 32 HOH HOH . D 4 HOH A 33 325 33 HOH HOH . D 4 HOH A 34 326 34 HOH HOH . D 4 HOH A 35 327 35 HOH HOH . D 4 HOH A 36 328 36 HOH HOH . D 4 HOH A 37 329 37 HOH HOH . D 4 HOH A 38 330 38 HOH HOH . D 4 HOH A 39 331 41 HOH HOH . D 4 HOH A 40 332 42 HOH HOH . D 4 HOH A 41 333 43 HOH HOH . D 4 HOH A 42 334 44 HOH HOH . D 4 HOH A 43 335 45 HOH HOH . D 4 HOH A 44 336 46 HOH HOH . D 4 HOH A 45 337 47 HOH HOH . D 4 HOH A 46 338 48 HOH HOH . D 4 HOH A 47 339 50 HOH HOH . D 4 HOH A 48 340 52 HOH HOH . D 4 HOH A 49 341 55 HOH HOH . D 4 HOH A 50 342 56 HOH HOH . D 4 HOH A 51 343 58 HOH HOH . D 4 HOH A 52 344 60 HOH HOH . D 4 HOH A 53 345 63 HOH HOH . D 4 HOH A 54 346 64 HOH HOH . D 4 HOH A 55 347 65 HOH HOH . D 4 HOH A 56 348 66 HOH HOH . D 4 HOH A 57 349 68 HOH HOH . D 4 HOH A 58 350 69 HOH HOH . D 4 HOH A 59 351 70 HOH HOH . D 4 HOH A 60 352 71 HOH HOH . D 4 HOH A 61 353 72 HOH HOH . D 4 HOH A 62 354 73 HOH HOH . D 4 HOH A 63 355 75 HOH HOH . D 4 HOH A 64 356 77 HOH HOH . D 4 HOH A 65 357 78 HOH HOH . D 4 HOH A 66 358 79 HOH HOH . D 4 HOH A 67 359 81 HOH HOH . D 4 HOH A 68 360 83 HOH HOH . D 4 HOH A 69 361 85 HOH HOH . D 4 HOH A 70 362 86 HOH HOH . D 4 HOH A 71 363 87 HOH HOH . D 4 HOH A 72 364 88 HOH HOH . D 4 HOH A 73 365 90 HOH HOH . D 4 HOH A 74 366 91 HOH HOH . D 4 HOH A 75 367 92 HOH HOH . D 4 HOH A 76 368 93 HOH HOH . D 4 HOH A 77 369 94 HOH HOH . D 4 HOH A 78 370 95 HOH HOH . D 4 HOH A 79 371 96 HOH HOH . D 4 HOH A 80 372 97 HOH HOH . D 4 HOH A 81 373 98 HOH HOH . D 4 HOH A 82 374 99 HOH HOH . D 4 HOH A 83 375 100 HOH HOH . D 4 HOH A 84 376 101 HOH HOH . D 4 HOH A 85 377 102 HOH HOH . D 4 HOH A 86 378 103 HOH HOH . D 4 HOH A 87 379 106 HOH HOH . D 4 HOH A 88 380 107 HOH HOH . D 4 HOH A 89 381 108 HOH HOH . D 4 HOH A 90 382 109 HOH HOH . D 4 HOH A 91 383 110 HOH HOH . D 4 HOH A 92 384 111 HOH HOH . D 4 HOH A 93 385 113 HOH HOH . D 4 HOH A 94 386 114 HOH HOH . D 4 HOH A 95 387 116 HOH HOH . D 4 HOH A 96 388 117 HOH HOH . D 4 HOH A 97 389 118 HOH HOH . D 4 HOH A 98 390 120 HOH HOH . D 4 HOH A 99 391 121 HOH HOH . D 4 HOH A 100 392 122 HOH HOH . D 4 HOH A 101 393 123 HOH HOH . D 4 HOH A 102 394 124 HOH HOH . D 4 HOH A 103 395 125 HOH HOH . D 4 HOH A 104 396 126 HOH HOH . D 4 HOH A 105 397 127 HOH HOH . D 4 HOH A 106 398 128 HOH HOH . D 4 HOH A 107 399 130 HOH HOH . D 4 HOH A 108 400 131 HOH HOH . D 4 HOH A 109 401 132 HOH HOH . D 4 HOH A 110 402 133 HOH HOH . D 4 HOH A 111 403 135 HOH HOH . D 4 HOH A 112 404 136 HOH HOH . D 4 HOH A 113 405 137 HOH HOH . D 4 HOH A 114 406 138 HOH HOH . D 4 HOH A 115 407 139 HOH HOH . D 4 HOH A 116 408 140 HOH HOH . D 4 HOH A 117 409 142 HOH HOH . D 4 HOH A 118 410 143 HOH HOH . D 4 HOH A 119 411 144 HOH HOH . D 4 HOH A 120 412 145 HOH HOH . D 4 HOH A 121 413 147 HOH HOH . D 4 HOH A 122 414 148 HOH HOH . D 4 HOH A 123 415 149 HOH HOH . D 4 HOH A 124 416 152 HOH HOH . D 4 HOH A 125 417 153 HOH HOH . D 4 HOH A 126 418 154 HOH HOH . D 4 HOH A 127 419 155 HOH HOH . D 4 HOH A 128 420 156 HOH HOH . D 4 HOH A 129 421 157 HOH HOH . D 4 HOH A 130 422 158 HOH HOH . D 4 HOH A 131 423 159 HOH HOH . D 4 HOH A 132 424 160 HOH HOH . D 4 HOH A 133 425 161 HOH HOH . D 4 HOH A 134 426 162 HOH HOH . D 4 HOH A 135 427 164 HOH HOH . D 4 HOH A 136 428 166 HOH HOH . D 4 HOH A 137 429 167 HOH HOH . D 4 HOH A 138 430 168 HOH HOH . D 4 HOH A 139 431 169 HOH HOH . D 4 HOH A 140 432 170 HOH HOH . D 4 HOH A 141 433 171 HOH HOH . D 4 HOH A 142 434 172 HOH HOH . D 4 HOH A 143 435 173 HOH HOH . D 4 HOH A 144 436 174 HOH HOH . D 4 HOH A 145 437 175 HOH HOH . D 4 HOH A 146 438 176 HOH HOH . D 4 HOH A 147 439 179 HOH HOH . D 4 HOH A 148 440 180 HOH HOH . D 4 HOH A 149 441 183 HOH HOH . D 4 HOH A 150 442 185 HOH HOH . D 4 HOH A 151 443 188 HOH HOH . D 4 HOH A 152 444 189 HOH HOH . D 4 HOH A 153 445 190 HOH HOH . D 4 HOH A 154 446 192 HOH HOH . D 4 HOH A 155 447 193 HOH HOH . D 4 HOH A 156 448 194 HOH HOH . D 4 HOH A 157 449 196 HOH HOH . D 4 HOH A 158 450 197 HOH HOH . D 4 HOH A 159 451 198 HOH HOH . D 4 HOH A 160 452 199 HOH HOH . D 4 HOH A 161 453 200 HOH HOH . D 4 HOH A 162 454 201 HOH HOH . D 4 HOH A 163 455 203 HOH HOH . D 4 HOH A 164 456 204 HOH HOH . D 4 HOH A 165 457 207 HOH HOH . D 4 HOH A 166 458 208 HOH HOH . D 4 HOH A 167 459 209 HOH HOH . D 4 HOH A 168 460 210 HOH HOH . D 4 HOH A 169 461 212 HOH HOH . D 4 HOH A 170 462 214 HOH HOH . D 4 HOH A 171 463 215 HOH HOH . D 4 HOH A 172 464 216 HOH HOH . D 4 HOH A 173 465 217 HOH HOH . D 4 HOH A 174 466 218 HOH HOH . D 4 HOH A 175 467 220 HOH HOH . D 4 HOH A 176 468 221 HOH HOH . D 4 HOH A 177 469 222 HOH HOH . D 4 HOH A 178 470 223 HOH HOH . D 4 HOH A 179 471 225 HOH HOH . D 4 HOH A 180 472 229 HOH HOH . D 4 HOH A 181 473 230 HOH HOH . D 4 HOH A 182 474 231 HOH HOH . D 4 HOH A 183 475 232 HOH HOH . D 4 HOH A 184 476 233 HOH HOH . D 4 HOH A 185 477 234 HOH HOH . D 4 HOH A 186 478 237 HOH HOH . D 4 HOH A 187 479 238 HOH HOH . D 4 HOH A 188 480 239 HOH HOH . D 4 HOH A 189 481 240 HOH HOH . D 4 HOH A 190 482 241 HOH HOH . D 4 HOH A 191 483 242 HOH HOH . D 4 HOH A 192 484 243 HOH HOH . D 4 HOH A 193 485 244 HOH HOH . D 4 HOH A 194 486 245 HOH HOH . D 4 HOH A 195 487 246 HOH HOH . D 4 HOH A 196 488 247 HOH HOH . D 4 HOH A 197 489 248 HOH HOH . D 4 HOH A 198 490 249 HOH HOH . D 4 HOH A 199 491 250 HOH HOH . D 4 HOH A 200 492 253 HOH HOH . D 4 HOH A 201 493 255 HOH HOH . D 4 HOH A 202 494 256 HOH HOH . D 4 HOH A 203 495 258 HOH HOH . D 4 HOH A 204 496 259 HOH HOH . D 4 HOH A 205 497 261 HOH HOH . D 4 HOH A 206 498 263 HOH HOH . D 4 HOH A 207 499 265 HOH HOH . D 4 HOH A 208 500 266 HOH HOH . D 4 HOH A 209 501 267 HOH HOH . D 4 HOH A 210 502 268 HOH HOH . D 4 HOH A 211 503 269 HOH HOH . D 4 HOH A 212 504 270 HOH HOH . D 4 HOH A 213 505 271 HOH HOH . D 4 HOH A 214 506 272 HOH HOH . D 4 HOH A 215 507 275 HOH HOH . E 4 HOH B 1 39 39 HOH HOH . E 4 HOH B 2 40 40 HOH HOH . E 4 HOH B 3 49 49 HOH HOH . E 4 HOH B 4 51 51 HOH HOH . E 4 HOH B 5 53 53 HOH HOH . E 4 HOH B 6 54 54 HOH HOH . E 4 HOH B 7 57 57 HOH HOH . E 4 HOH B 8 59 59 HOH HOH . E 4 HOH B 9 61 61 HOH HOH . E 4 HOH B 10 62 62 HOH HOH . E 4 HOH B 11 67 67 HOH HOH . E 4 HOH B 12 74 74 HOH HOH . E 4 HOH B 13 76 76 HOH HOH . E 4 HOH B 14 80 80 HOH HOH . E 4 HOH B 15 82 82 HOH HOH . E 4 HOH B 16 84 84 HOH HOH . E 4 HOH B 17 89 89 HOH HOH . E 4 HOH B 18 104 104 HOH HOH . E 4 HOH B 19 105 105 HOH HOH . E 4 HOH B 20 112 112 HOH HOH . E 4 HOH B 21 115 115 HOH HOH . E 4 HOH B 22 119 119 HOH HOH . E 4 HOH B 23 129 129 HOH HOH . E 4 HOH B 24 134 134 HOH HOH . E 4 HOH B 25 141 141 HOH HOH . E 4 HOH B 26 146 146 HOH HOH . E 4 HOH B 27 150 150 HOH HOH . E 4 HOH B 28 151 151 HOH HOH . E 4 HOH B 29 163 163 HOH HOH . E 4 HOH B 30 165 165 HOH HOH . E 4 HOH B 31 177 177 HOH HOH . E 4 HOH B 32 178 178 HOH HOH . E 4 HOH B 33 181 181 HOH HOH . E 4 HOH B 34 182 182 HOH HOH . E 4 HOH B 35 184 184 HOH HOH . E 4 HOH B 36 186 186 HOH HOH . E 4 HOH B 37 187 187 HOH HOH . E 4 HOH B 38 191 191 HOH HOH . E 4 HOH B 39 195 195 HOH HOH . E 4 HOH B 40 202 202 HOH HOH . E 4 HOH B 41 205 205 HOH HOH . E 4 HOH B 42 206 206 HOH HOH . E 4 HOH B 43 211 211 HOH HOH . E 4 HOH B 44 213 213 HOH HOH . E 4 HOH B 45 219 219 HOH HOH . E 4 HOH B 46 224 224 HOH HOH . E 4 HOH B 47 226 226 HOH HOH . E 4 HOH B 48 227 227 HOH HOH . E 4 HOH B 49 228 228 HOH HOH . E 4 HOH B 50 235 235 HOH HOH . E 4 HOH B 51 236 236 HOH HOH . E 4 HOH B 52 251 251 HOH HOH . E 4 HOH B 53 252 252 HOH HOH . E 4 HOH B 54 254 254 HOH HOH . E 4 HOH B 55 257 257 HOH HOH . E 4 HOH B 56 260 260 HOH HOH . E 4 HOH B 57 262 262 HOH HOH . E 4 HOH B 58 264 264 HOH HOH . E 4 HOH B 59 273 273 HOH HOH . E 4 HOH B 60 274 274 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 24.578 _atom_site.Cartn_y 4.427 _atom_site.Cartn_z 68.334 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 42.36 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #