data_1YD1
#
_model_server_result.job_id            g68OoaEYCdayl7nMcXPdSg 
_model_server_result.datetime_utc      '2024-10-19 10:17:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1yd1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":2002}' 
#
_entry.id    1YD1 
#
_exptl.entry_id    1YD1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1YD1 
_cell.length_a            55.246 
_cell.length_b            55.246 
_cell.length_c            108.63 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1YD1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NH2 ARG 6 A ARG 6 3_644 C MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.875 ? 
metalc ? metalc2 A OE2 GLU 76 A GLU 76 1_555 B MG MG . A MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
metalc ? metalc3 B MG MG . A MG 2001 1_555 E O HOH . A HOH 2008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? 
metalc ? metalc4 B MG MG . A MG 2001 1_555 E O HOH . A HOH 2013 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
metalc ? metalc5 B MG MG . A MG 2001 1_555 E O HOH . A HOH 2017 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc6 B MG MG . A MG 2001 1_555 E O HOH . A HOH 2026 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? 
metalc ? metalc7 B MG MG . A MG 2001 1_555 E O HOH . A HOH 2030 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1YD1 
_atom_sites.fract_transf_matrix[1][1]    0.018101 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018101 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009206 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 2001 1 MG MG . 
C 2 MG A 1 2002 2 MG MG . 
D 3 GOL A 1 1001 1 GOL GOL . 
E 4 HOH A 1 2003 1 HOH HOH . 
E 4 HOH A 2 2004 2 HOH HOH . 
E 4 HOH A 3 2005 3 HOH HOH . 
E 4 HOH A 4 2006 4 HOH HOH . 
E 4 HOH A 5 2007 5 HOH HOH . 
E 4 HOH A 6 2008 6 HOH HOH . 
E 4 HOH A 7 2009 7 HOH HOH . 
E 4 HOH A 8 2010 8 HOH HOH . 
E 4 HOH A 9 2011 9 HOH HOH . 
E 4 HOH A 10 2012 10 HOH HOH . 
E 4 HOH A 11 2013 11 HOH HOH . 
E 4 HOH A 12 2014 12 HOH HOH . 
E 4 HOH A 13 2015 13 HOH HOH . 
E 4 HOH A 14 2016 14 HOH HOH . 
E 4 HOH A 15 2017 15 HOH HOH . 
E 4 HOH A 16 2018 16 HOH HOH . 
E 4 HOH A 17 2019 17 HOH HOH . 
E 4 HOH A 18 2020 18 HOH HOH . 
E 4 HOH A 19 2021 19 HOH HOH . 
E 4 HOH A 20 2022 20 HOH HOH . 
E 4 HOH A 21 2023 21 HOH HOH . 
E 4 HOH A 22 2024 22 HOH HOH . 
E 4 HOH A 23 2025 23 HOH HOH . 
E 4 HOH A 24 2026 24 HOH HOH . 
E 4 HOH A 25 2027 25 HOH HOH . 
E 4 HOH A 26 2028 26 HOH HOH . 
E 4 HOH A 27 2029 27 HOH HOH . 
E 4 HOH A 28 2030 28 HOH HOH . 
E 4 HOH A 29 2031 29 HOH HOH . 
E 4 HOH A 30 2032 30 HOH HOH . 
E 4 HOH A 31 2033 31 HOH HOH . 
E 4 HOH A 32 2034 32 HOH HOH . 
E 4 HOH A 33 2035 33 HOH HOH . 
E 4 HOH A 34 2036 34 HOH HOH . 
E 4 HOH A 35 2037 35 HOH HOH . 
E 4 HOH A 36 2038 36 HOH HOH . 
E 4 HOH A 37 2039 37 HOH HOH . 
E 4 HOH A 38 2040 38 HOH HOH . 
E 4 HOH A 39 2041 39 HOH HOH . 
E 4 HOH A 40 2042 40 HOH HOH . 
E 4 HOH A 41 2043 41 HOH HOH . 
E 4 HOH A 42 2044 42 HOH HOH . 
E 4 HOH A 43 2045 43 HOH HOH . 
E 4 HOH A 44 2046 44 HOH HOH . 
E 4 HOH A 45 2047 45 HOH HOH . 
E 4 HOH A 46 2048 46 HOH HOH . 
E 4 HOH A 47 2049 47 HOH HOH . 
E 4 HOH A 48 2050 48 HOH HOH . 
E 4 HOH A 49 2051 49 HOH HOH . 
E 4 HOH A 50 2052 50 HOH HOH . 
E 4 HOH A 51 2053 51 HOH HOH . 
E 4 HOH A 52 2054 52 HOH HOH . 
E 4 HOH A 53 2055 53 HOH HOH . 
E 4 HOH A 54 2056 55 HOH HOH . 
E 4 HOH A 55 2057 56 HOH HOH . 
E 4 HOH A 56 2058 57 HOH HOH . 
E 4 HOH A 57 2059 58 HOH HOH . 
E 4 HOH A 58 2060 59 HOH HOH . 
E 4 HOH A 59 2061 60 HOH HOH . 
E 4 HOH A 60 2062 61 HOH HOH . 
E 4 HOH A 61 2063 62 HOH HOH . 
E 4 HOH A 62 2064 63 HOH HOH . 
E 4 HOH A 63 2065 65 HOH HOH . 
E 4 HOH A 64 2066 67 HOH HOH . 
E 4 HOH A 65 2067 68 HOH HOH . 
E 4 HOH A 66 2068 69 HOH HOH . 
E 4 HOH A 67 2069 70 HOH HOH . 
E 4 HOH A 68 2070 71 HOH HOH . 
E 4 HOH A 69 2071 72 HOH HOH . 
E 4 HOH A 70 2072 73 HOH HOH . 
E 4 HOH A 71 2073 74 HOH HOH . 
E 4 HOH A 72 2074 75 HOH HOH . 
E 4 HOH A 73 2075 76 HOH HOH . 
E 4 HOH A 74 2076 77 HOH HOH . 
E 4 HOH A 75 2077 78 HOH HOH . 
E 4 HOH A 76 2078 79 HOH HOH . 
E 4 HOH A 77 2079 80 HOH HOH . 
E 4 HOH A 78 2080 81 HOH HOH . 
E 4 HOH A 79 2081 82 HOH HOH . 
E 4 HOH A 80 2082 83 HOH HOH . 
E 4 HOH A 81 2083 84 HOH HOH . 
E 4 HOH A 82 2084 85 HOH HOH . 
E 4 HOH A 83 2085 86 HOH HOH . 
E 4 HOH A 84 2086 87 HOH HOH . 
E 4 HOH A 85 2087 88 HOH HOH . 
E 4 HOH A 86 2088 89 HOH HOH . 
E 4 HOH A 87 2089 90 HOH HOH . 
E 4 HOH A 88 2090 91 HOH HOH . 
E 4 HOH A 89 2091 92 HOH HOH . 
E 4 HOH A 90 2092 93 HOH HOH . 
E 4 HOH A 91 2093 94 HOH HOH . 
E 4 HOH A 92 2094 95 HOH HOH . 
E 4 HOH A 93 2095 97 HOH HOH . 
E 4 HOH A 94 2096 100 HOH HOH . 
E 4 HOH A 95 2097 101 HOH HOH . 
E 4 HOH A 96 2098 102 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               54.533 
_atom_site.Cartn_y               13.387 
_atom_site.Cartn_z               31.248 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        37.79 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           2002 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              67 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           362 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#