data_1YD7 # _model_server_result.job_id KQ0UyX-dYvN2fcHI7ohHog _model_server_result.datetime_utc '2025-02-23 02:28:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yd7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":391}' # _entry.id 1YD7 # _exptl.entry_id 1YD7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight ? _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'UNKNOWN ATOM OR ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1YD7 _cell.length_a 61.448 _cell.length_b 61.448 _cell.length_c 129.084 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YD7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 153 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 1 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 55 A ALA 47 1_555 A N MSE 56 A MSE 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale2 A C MSE 56 A MSE 48 1_555 A N ALA 57 A ALA 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 A C TYR 59 A TYR 51 1_555 A N MSE 60 A MSE 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale4 A C MSE 60 A MSE 52 1_555 A N PRO 61 A PRO 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? covale ? covale5 A C GLN 69 A GLN 61 1_555 A N MSE 70 A MSE 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale6 A C MSE 70 A MSE 62 1_555 A N GLU 71 A GLU 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale7 A C ALA 90 A ALA 82 1_555 A N MSE 91 A MSE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale8 A C MSE 91 A MSE 83 1_555 A N THR 92 A THR 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale9 A C LEU 101 A LEU 93 1_555 A N MSE 102 A MSE 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale10 A C MSE 102 A MSE 94 1_555 A N GLN 103 A GLN 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale11 A C MSE 111 A MSE 103 1_555 A N THR 112 A THR 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale12 A C HIS 191 A HIS 183 1_555 A N MSE 192 A MSE 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale13 A C MSE 192 A MSE 184 1_555 A N ARG 193 A ARG 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula ? _chem_comp.formula_weight ? _chem_comp.id UNX _chem_comp.mon_nstd_flag . _chem_comp.name 'UNKNOWN ATOM OR ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1YD7 _atom_sites.fract_transf_matrix[1][1] 0.016274 _atom_sites.fract_transf_matrix[1][2] 0.009396 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018792 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007747 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UNX A 1 388 301 UNX UNX . C 2 UNX A 1 389 302 UNX UNX . D 2 UNX A 1 390 303 UNX UNX . E 2 UNX A 1 391 304 UNX UNX . F 2 UNX A 1 392 305 UNX UNX . G 2 UNX A 1 393 306 UNX UNX . H 3 HOH A 1 394 1 HOH HOH . H 3 HOH A 2 395 2 HOH HOH . H 3 HOH A 3 396 3 HOH HOH . H 3 HOH A 4 397 4 HOH HOH . H 3 HOH A 5 398 5 HOH HOH . H 3 HOH A 6 399 6 HOH HOH . H 3 HOH A 7 400 7 HOH HOH . H 3 HOH A 8 401 8 HOH HOH . H 3 HOH A 9 402 9 HOH HOH . H 3 HOH A 10 403 10 HOH HOH . H 3 HOH A 11 404 11 HOH HOH . H 3 HOH A 12 405 12 HOH HOH . H 3 HOH A 13 406 13 HOH HOH . H 3 HOH A 14 407 14 HOH HOH . H 3 HOH A 15 408 15 HOH HOH . H 3 HOH A 16 409 16 HOH HOH . H 3 HOH A 17 410 17 HOH HOH . H 3 HOH A 18 411 18 HOH HOH . H 3 HOH A 19 412 19 HOH HOH . H 3 HOH A 20 413 20 HOH HOH . H 3 HOH A 21 414 21 HOH HOH . H 3 HOH A 22 415 22 HOH HOH . H 3 HOH A 23 416 23 HOH HOH . H 3 HOH A 24 417 24 HOH HOH . H 3 HOH A 25 418 25 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol X _atom_site.label_atom_id UNK _atom_site.label_comp_id UNX _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x 18.208 _atom_site.Cartn_y 17.251 _atom_site.Cartn_z 63.891 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.63 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id UNK _atom_site.auth_comp_id UNX _atom_site.auth_seq_id 391 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #