data_1YDB
#
_model_server_result.job_id            VdDVsiOilLT2d2fnqCqA0Q 
_model_server_result.datetime_utc      '2024-11-19 06:44:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ydb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":263}' 
#
_entry.id    1YDB 
#
_exptl.entry_id    1YDB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              200.59 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MERCURY (II) ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.6 
_cell.angle_gamma         90 
_cell.entry_id            1YDB 
_cell.length_a            42.7 
_cell.length_b            41.7 
_cell.length_c            73 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1YDB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 93 A HIS 94 1_555 B ZN ZN . A ZN 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
metalc ? metalc2 A NE2 HIS 95 A HIS 96 1_555 B ZN ZN . A ZN 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? 
metalc ? metalc3 A ND1 HIS 118 A HIS 119 1_555 B ZN ZN . A ZN 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.909 ? 
metalc ? metalc4 A O VAL 133 A VAL 135 1_555 C HG HG . A HG 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.494 ? 
metalc ? metalc5 A O GLN 135 A GLN 137 1_555 C HG HG . A HG 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.122 ? 
metalc ? metalc6 A O GLU 203 A GLU 205 1_555 C HG HG . A HG 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.285 ? 
metalc ? metalc7 A SG CYS 204 A CYS 206 1_555 C HG HG . A HG 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? 
metalc ? metalc8 B ZN ZN . A ZN 262 1_555 D N1 AZM . A AZM 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
#
_chem_comp.formula           'Hg 2' 
_chem_comp.formula_weight    200.59 
_chem_comp.id                HG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MERCURY (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1YDB 
_atom_sites.fract_transf_matrix[1][1]    0.023419 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.0061 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023981 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014156 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 262 262 ZN ZN . 
C 3 HG A 1 263 263 HG HG . 
D 4 AZM A 1 264 264 AZM AZM . 
E 5 HOH A 1 265 1 HOH HOH . 
E 5 HOH A 2 266 2 HOH HOH . 
E 5 HOH A 3 267 3 HOH HOH . 
E 5 HOH A 4 268 4 HOH HOH . 
E 5 HOH A 5 269 5 HOH HOH . 
E 5 HOH A 6 270 6 HOH HOH . 
E 5 HOH A 7 271 7 HOH HOH . 
E 5 HOH A 8 272 8 HOH HOH . 
E 5 HOH A 9 273 9 HOH HOH . 
E 5 HOH A 10 274 10 HOH HOH . 
E 5 HOH A 11 275 11 HOH HOH . 
E 5 HOH A 12 276 12 HOH HOH . 
E 5 HOH A 13 277 13 HOH HOH . 
E 5 HOH A 14 278 14 HOH HOH . 
E 5 HOH A 15 279 15 HOH HOH . 
E 5 HOH A 16 280 16 HOH HOH . 
E 5 HOH A 17 281 17 HOH HOH . 
E 5 HOH A 18 282 18 HOH HOH . 
E 5 HOH A 19 283 19 HOH HOH . 
E 5 HOH A 20 284 20 HOH HOH . 
E 5 HOH A 21 285 21 HOH HOH . 
E 5 HOH A 22 286 22 HOH HOH . 
E 5 HOH A 23 287 23 HOH HOH . 
E 5 HOH A 24 288 24 HOH HOH . 
E 5 HOH A 25 289 25 HOH HOH . 
E 5 HOH A 26 290 26 HOH HOH . 
E 5 HOH A 27 291 27 HOH HOH . 
E 5 HOH A 28 292 28 HOH HOH . 
E 5 HOH A 29 293 29 HOH HOH . 
E 5 HOH A 30 294 30 HOH HOH . 
E 5 HOH A 31 295 31 HOH HOH . 
E 5 HOH A 32 296 32 HOH HOH . 
E 5 HOH A 33 297 33 HOH HOH . 
E 5 HOH A 34 298 34 HOH HOH . 
E 5 HOH A 35 299 35 HOH HOH . 
E 5 HOH A 36 300 36 HOH HOH . 
E 5 HOH A 37 301 37 HOH HOH . 
E 5 HOH A 38 302 38 HOH HOH . 
E 5 HOH A 39 303 39 HOH HOH . 
E 5 HOH A 40 304 40 HOH HOH . 
E 5 HOH A 41 305 41 HOH HOH . 
E 5 HOH A 42 306 42 HOH HOH . 
E 5 HOH A 43 307 43 HOH HOH . 
E 5 HOH A 44 308 44 HOH HOH . 
E 5 HOH A 45 309 45 HOH HOH . 
E 5 HOH A 46 310 46 HOH HOH . 
E 5 HOH A 47 311 47 HOH HOH . 
E 5 HOH A 48 312 48 HOH HOH . 
E 5 HOH A 49 313 49 HOH HOH . 
E 5 HOH A 50 314 50 HOH HOH . 
E 5 HOH A 51 315 51 HOH HOH . 
E 5 HOH A 52 316 52 HOH HOH . 
E 5 HOH A 53 317 53 HOH HOH . 
E 5 HOH A 54 318 54 HOH HOH . 
E 5 HOH A 55 319 55 HOH HOH . 
E 5 HOH A 56 320 56 HOH HOH . 
E 5 HOH A 57 321 57 HOH HOH . 
E 5 HOH A 58 322 58 HOH HOH . 
E 5 HOH A 59 323 59 HOH HOH . 
E 5 HOH A 60 324 60 HOH HOH . 
E 5 HOH A 61 325 61 HOH HOH . 
E 5 HOH A 62 326 62 HOH HOH . 
E 5 HOH A 63 327 63 HOH HOH . 
E 5 HOH A 64 328 64 HOH HOH . 
E 5 HOH A 65 329 65 HOH HOH . 
E 5 HOH A 66 330 66 HOH HOH . 
E 5 HOH A 67 331 67 HOH HOH . 
E 5 HOH A 68 332 68 HOH HOH . 
E 5 HOH A 69 333 69 HOH HOH . 
E 5 HOH A 70 334 70 HOH HOH . 
E 5 HOH A 71 335 71 HOH HOH . 
E 5 HOH A 72 336 72 HOH HOH . 
E 5 HOH A 73 337 73 HOH HOH . 
E 5 HOH A 74 338 74 HOH HOH . 
E 5 HOH A 75 339 75 HOH HOH . 
E 5 HOH A 76 340 76 HOH HOH . 
E 5 HOH A 77 341 77 HOH HOH . 
E 5 HOH A 78 342 78 HOH HOH . 
E 5 HOH A 79 343 79 HOH HOH . 
E 5 HOH A 80 344 80 HOH HOH . 
E 5 HOH A 81 345 81 HOH HOH . 
E 5 HOH A 82 346 82 HOH HOH . 
E 5 HOH A 83 347 83 HOH HOH . 
E 5 HOH A 84 348 84 HOH HOH . 
E 5 HOH A 85 349 85 HOH HOH . 
E 5 HOH A 86 350 86 HOH HOH . 
E 5 HOH A 87 351 87 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           HG 
_atom_site.label_atom_id         HG 
_atom_site.label_comp_id         HG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -2.118 
_atom_site.Cartn_y               10.847 
_atom_site.Cartn_z               24.54 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        20.96 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          HG 
_atom_site.auth_comp_id          HG 
_atom_site.auth_seq_id           263 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           349 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           1 
#