data_1YDD # _model_server_result.job_id rnlc1yiJHyxQEQqdGmVpHA _model_server_result.datetime_utc '2024-11-13 18:18:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ydd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":264}' # _entry.id 1YDD # _exptl.entry_id 1YDD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 222.245 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-ACETAMIDO-1,3,4-THIADIAZOLE-2-SULFONAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.6 _cell.angle_gamma 90 _cell.entry_id 1YDD _cell.length_a 42.7 _cell.length_b 41.7 _cell.length_c 73 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YDD _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 93 A HIS 94 1_555 B ZN ZN . A ZN 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc2 A NE2 HIS 95 A HIS 96 1_555 B ZN ZN . A ZN 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.904 ? metalc ? metalc3 A ND1 HIS 118 A HIS 119 1_555 B ZN ZN . A ZN 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc4 A O GLN 135 A GLN 137 1_555 C HG HG . A HG 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.797 ? metalc ? metalc5 A O GLU 203 A GLU 205 1_555 C HG HG . A HG 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.246 ? metalc ? metalc6 A SG CYS 204 A CYS 206 1_555 C HG HG . A HG 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc7 B ZN ZN . A ZN 262 1_555 D N1 AZM . A AZM 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.696 ? # _chem_comp.formula 'C4 H6 N4 O3 S2' _chem_comp.formula_weight 222.245 _chem_comp.id AZM _chem_comp.mon_nstd_flag . _chem_comp.name 5-ACETAMIDO-1,3,4-THIADIAZOLE-2-SULFONAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N3 AZM doub 70 n y C1 S1 AZM sing 71 n n C1 S2 AZM sing 72 n y C2 N2 AZM doub 73 n y C2 N4 AZM sing 74 n n C2 S2 AZM sing 75 n y C3 C4 AZM sing 76 n n C3 N4 AZM sing 77 n n C3 O3 AZM doub 78 n n C4 H41 AZM sing 79 n n C4 H42 AZM sing 80 n n C4 H43 AZM sing 81 n n N1 S1 AZM sing 82 n n N1 HN11 AZM sing 83 n n N1 HN12 AZM sing 84 n n N2 N3 AZM sing 85 n y N4 HN4 AZM sing 86 n n O1 S1 AZM doub 87 n n O2 S1 AZM doub 88 n n # _atom_sites.entry_id 1YDD _atom_sites.fract_transf_matrix[1][1] 0.023419 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.0061 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023981 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014156 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 262 262 ZN ZN . C 3 HG A 1 263 263 HG HG . D 4 AZM A 1 264 264 AZM AZM . E 5 HOH A 1 265 1 HOH HOH . E 5 HOH A 2 266 2 HOH HOH . E 5 HOH A 3 267 3 HOH HOH . E 5 HOH A 4 268 4 HOH HOH . E 5 HOH A 5 269 5 HOH HOH . E 5 HOH A 6 270 6 HOH HOH . E 5 HOH A 7 271 7 HOH HOH . E 5 HOH A 8 272 8 HOH HOH . E 5 HOH A 9 273 9 HOH HOH . E 5 HOH A 10 274 10 HOH HOH . E 5 HOH A 11 275 11 HOH HOH . E 5 HOH A 12 276 12 HOH HOH . E 5 HOH A 13 277 13 HOH HOH . E 5 HOH A 14 278 14 HOH HOH . E 5 HOH A 15 279 15 HOH HOH . E 5 HOH A 16 280 16 HOH HOH . E 5 HOH A 17 281 17 HOH HOH . E 5 HOH A 18 282 18 HOH HOH . E 5 HOH A 19 283 19 HOH HOH . E 5 HOH A 20 284 20 HOH HOH . E 5 HOH A 21 285 21 HOH HOH . E 5 HOH A 22 286 22 HOH HOH . E 5 HOH A 23 287 23 HOH HOH . E 5 HOH A 24 288 24 HOH HOH . E 5 HOH A 25 289 25 HOH HOH . E 5 HOH A 26 290 26 HOH HOH . E 5 HOH A 27 291 27 HOH HOH . E 5 HOH A 28 292 28 HOH HOH . E 5 HOH A 29 293 29 HOH HOH . E 5 HOH A 30 294 30 HOH HOH . E 5 HOH A 31 295 31 HOH HOH . E 5 HOH A 32 296 32 HOH HOH . E 5 HOH A 33 297 33 HOH HOH . E 5 HOH A 34 298 34 HOH HOH . E 5 HOH A 35 299 35 HOH HOH . E 5 HOH A 36 300 36 HOH HOH . E 5 HOH A 37 301 37 HOH HOH . E 5 HOH A 38 302 38 HOH HOH . E 5 HOH A 39 303 39 HOH HOH . E 5 HOH A 40 304 40 HOH HOH . E 5 HOH A 41 305 41 HOH HOH . E 5 HOH A 42 306 42 HOH HOH . E 5 HOH A 43 307 43 HOH HOH . E 5 HOH A 44 308 44 HOH HOH . E 5 HOH A 45 309 45 HOH HOH . E 5 HOH A 46 310 46 HOH HOH . E 5 HOH A 47 311 47 HOH HOH . E 5 HOH A 48 312 48 HOH HOH . E 5 HOH A 49 313 49 HOH HOH . E 5 HOH A 50 314 50 HOH HOH . E 5 HOH A 51 315 51 HOH HOH . E 5 HOH A 52 316 52 HOH HOH . E 5 HOH A 53 317 53 HOH HOH . E 5 HOH A 54 318 54 HOH HOH . E 5 HOH A 55 319 55 HOH HOH . E 5 HOH A 56 320 56 HOH HOH . E 5 HOH A 57 321 57 HOH HOH . E 5 HOH A 58 322 58 HOH HOH . E 5 HOH A 59 323 59 HOH HOH . E 5 HOH A 60 324 60 HOH HOH . E 5 HOH A 61 325 61 HOH HOH . E 5 HOH A 62 326 62 HOH HOH . E 5 HOH A 63 327 63 HOH HOH . E 5 HOH A 64 328 64 HOH HOH . E 5 HOH A 65 329 65 HOH HOH . E 5 HOH A 66 330 66 HOH HOH . E 5 HOH A 67 331 67 HOH HOH . E 5 HOH A 68 332 68 HOH HOH . E 5 HOH A 69 333 69 HOH HOH . E 5 HOH A 70 334 70 HOH HOH . E 5 HOH A 71 335 71 HOH HOH . E 5 HOH A 72 336 72 HOH HOH . E 5 HOH A 73 337 73 HOH HOH . E 5 HOH A 74 338 74 HOH HOH . E 5 HOH A 75 339 75 HOH HOH . E 5 HOH A 76 340 76 HOH HOH . E 5 HOH A 77 341 77 HOH HOH . E 5 HOH A 78 342 78 HOH HOH . E 5 HOH A 79 343 79 HOH HOH . E 5 HOH A 80 344 80 HOH HOH . E 5 HOH A 81 345 81 HOH HOH . E 5 HOH A 82 346 82 HOH HOH . E 5 HOH A 83 347 83 HOH HOH . E 5 HOH A 84 348 84 HOH HOH . E 5 HOH A 85 349 85 HOH HOH . E 5 HOH A 86 350 86 HOH HOH . E 5 HOH A 87 351 87 HOH HOH . E 5 HOH A 88 352 88 HOH HOH . E 5 HOH A 89 353 89 HOH HOH . E 5 HOH A 90 354 90 HOH HOH . E 5 HOH A 91 355 91 HOH HOH . E 5 HOH A 92 356 92 HOH HOH . E 5 HOH A 93 357 93 HOH HOH . E 5 HOH A 94 358 94 HOH HOH . E 5 HOH A 95 359 95 HOH HOH . E 5 HOH A 96 360 96 HOH HOH . E 5 HOH A 97 361 97 HOH HOH . E 5 HOH A 98 362 98 HOH HOH . E 5 HOH A 99 363 99 HOH HOH . E 5 HOH A 100 364 100 HOH HOH . E 5 HOH A 101 365 101 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AZM . . . D 4 -5.457 2.085 15.541 1 10.35 ? C1 AZM 264 A 1 HETATM 2 C C2 AZM . . . D 4 -4.986 3.753 14.058 1 10.98 ? C2 AZM 264 A 1 HETATM 3 C C3 AZM . . . D 4 -5.631 5.963 13.422 1 11.73 ? C3 AZM 264 A 1 HETATM 4 C C4 AZM . . . D 4 -5.288 7.047 12.433 1 11.49 ? C4 AZM 264 A 1 HETATM 5 N N1 AZM . . . D 4 -5.879 -0.459 16.177 1 9.9 ? N1 AZM 264 A 1 HETATM 6 N N2 AZM . . . D 4 -4.247 2.752 13.846 1 10.68 ? N2 AZM 264 A 1 HETATM 7 N N3 AZM . . . D 4 -4.486 1.751 14.764 1 10.59 ? N3 AZM 264 A 1 HETATM 8 N N4 AZM . . . D 4 -4.868 4.879 13.281 1 11.44 ? N4 AZM 264 A 1 HETATM 9 O O1 AZM . . . D 4 -5.04 1.001 17.873 1 10.21 ? O1 AZM 264 A 1 HETATM 10 O O2 AZM . . . D 4 -7.405 1.334 16.954 1 9.66 ? O2 AZM 264 A 1 HETATM 11 O O3 AZM . . . D 4 -6.468 6.005 14.34 1 12.29 ? O3 AZM 264 A 1 HETATM 12 S S1 AZM . . . D 4 -6.002 0.959 16.813 1 9.89 ? S1 AZM 264 A 1 HETATM 13 S S2 AZM . . . D 4 -6.128 3.67 15.329 1 10.77 ? S2 AZM 264 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 229 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #