data_1YDT # _model_server_result.job_id 68oVtLVkk7TYajpeWCykLA _model_server_result.datetime_utc '2024-11-16 19:41:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ydt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":351}' # _entry.id 1YDT # _exptl.entry_id 1YDT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 446.361 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-[2-(4-BROMOCINNAMYLAMINO)ETHYL]-5-ISOQUINOLINE SULFONAMIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1YDT _cell.length_a 73.58 _cell.length_b 76.28 _cell.length_c 80.58 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YDT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TRP 196 E TRP 196 1_555 A N TPO 197 E TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C TPO 197 E TPO 197 1_555 A N LEU 198 E LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 A C VAL 337 E VAL 337 1_555 A N SEP 338 E SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale4 A C SEP 338 E SEP 338 1_555 A N ILE 339 E ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'C20 H20 Br N3 O2 S' _chem_comp.formula_weight 446.361 _chem_comp.id IQB _chem_comp.mon_nstd_flag . _chem_comp.name 'N-[2-(4-BROMOCINNAMYLAMINO)ETHYL]-5-ISOQUINOLINE SULFONAMIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms H-89 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 IQB doub 173 n y C1 C10 IQB sing 174 n y C1 S IQB sing 175 n n C2 C3 IQB sing 176 n y C2 H2 IQB sing 177 n n C3 C4 IQB doub 178 n y C3 H3 IQB sing 179 n n C4 C5 IQB sing 180 n y C4 H4 IQB sing 181 n n C5 C6 IQB sing 182 n y C5 C10 IQB doub 183 n y C6 N7 IQB doub 184 n y C6 H6 IQB sing 185 n n N7 C8 IQB sing 186 n y C8 C9 IQB doub 187 n y C8 H8 IQB sing 188 n n C9 C10 IQB sing 189 n y C9 H9 IQB sing 190 n n S O1 IQB doub 191 n n S O2 IQB doub 192 n n S N1' IQB sing 193 n n N1' C2' IQB sing 194 n n N1' HN1 IQB sing 195 n n C2' C3' IQB sing 196 n n C2' "H2'1" IQB sing 197 n n C2' "H2'2" IQB sing 198 n n C3' N4' IQB sing 199 n n C3' "H3'1" IQB sing 200 n n C3' "H3'2" IQB sing 201 n n N4' C5' IQB sing 202 n n N4' HN4 IQB sing 203 n n C5' C6' IQB sing 204 n n C5' "H5'1" IQB sing 205 n n C5' "H5'2" IQB sing 206 n n C6' C7' IQB doub 207 e n C6' H6' IQB sing 208 n n C7' C1' IQB sing 209 n n C7' H7' IQB sing 210 n n C1' C2B IQB doub 211 n y C1' C6B IQB sing 212 n y C2B C3B IQB sing 213 n y C2B H2' IQB sing 214 n n C3B C4' IQB doub 215 n y C3B H3' IQB sing 216 n n C4' BR4' IQB sing 217 n n C4' C5B IQB sing 218 n y C5B C6B IQB doub 219 n y C5B H5' IQB sing 220 n n C6B H6B IQB sing 221 n n # _atom_sites.entry_id 1YDT _atom_sites.fract_transf_matrix[1][1] 0.013591 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01311 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01241 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 IQB E 1 351 1 IQB IQB . D 4 HOH E 1 400 400 HOH HOH . D 4 HOH E 2 401 401 HOH HOH . D 4 HOH E 3 402 402 HOH HOH . D 4 HOH E 4 403 403 HOH HOH . D 4 HOH E 5 404 404 HOH HOH . D 4 HOH E 6 405 405 HOH HOH . D 4 HOH E 7 407 407 HOH HOH . D 4 HOH E 8 408 408 HOH HOH . D 4 HOH E 9 412 412 HOH HOH . D 4 HOH E 10 413 413 HOH HOH . D 4 HOH E 11 414 414 HOH HOH . D 4 HOH E 12 416 416 HOH HOH . D 4 HOH E 13 417 417 HOH HOH . D 4 HOH E 14 419 419 HOH HOH . D 4 HOH E 15 420 420 HOH HOH . D 4 HOH E 16 422 422 HOH HOH . D 4 HOH E 17 424 424 HOH HOH . D 4 HOH E 18 426 426 HOH HOH . E 4 HOH I 1 411 411 HOH HOH . E 4 HOH I 2 421 421 HOH HOH . E 4 HOH I 3 425 425 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IQB . . . C 3 6.904 10.245 2.828 1 24.81 ? C1 IQB 351 E 1 HETATM 2 C C2 IQB . . . C 3 7.015 10.291 1.43 1 24.37 ? C2 IQB 351 E 1 HETATM 3 C C3 IQB . . . C 3 5.871 10.238 0.626 1 24.54 ? C3 IQB 351 E 1 HETATM 4 C C4 IQB . . . C 3 4.6 10.142 1.205 1 23.54 ? C4 IQB 351 E 1 HETATM 5 C C5 IQB . . . C 3 4.481 10.096 2.598 1 25.57 ? C5 IQB 351 E 1 HETATM 6 C C6 IQB . . . C 3 3.22 10 3.192 1 25.72 ? C6 IQB 351 E 1 HETATM 7 N N7 IQB . . . C 3 3.1 9.954 4.542 1 25.28 ? N7 IQB 351 E 1 HETATM 8 C C8 IQB . . . C 3 4.182 10 5.355 1 23.79 ? C8 IQB 351 E 1 HETATM 9 C C9 IQB . . . C 3 5.467 10.098 4.807 1 26.57 ? C9 IQB 351 E 1 HETATM 10 C C10 IQB . . . C 3 5.628 10.148 3.414 1 26.78 ? C10 IQB 351 E 1 HETATM 11 S S IQB . . . C 3 8.385 10.32 3.807 1 20.97 ? S IQB 351 E 1 HETATM 12 O O1 IQB . . . C 3 8.168 11.239 4.898 1 23.61 ? O1 IQB 351 E 1 HETATM 13 O O2 IQB . . . C 3 9.515 10.533 2.926 1 24.37 ? O2 IQB 351 E 1 HETATM 14 N N1' IQB . . . C 3 8.422 8.825 4.403 1 21.76 ? N1' IQB 351 E 1 HETATM 15 C C2' IQB . . . C 3 8.874 7.706 3.596 1 23.31 ? C2' IQB 351 E 1 HETATM 16 C C3' IQB . . . C 3 10.193 8.052 2.886 1 25.79 ? C3' IQB 351 E 1 HETATM 17 N N4' IQB . . . C 3 11.274 7.179 3.36 1 27.88 ? N4' IQB 351 E 1 HETATM 18 C C5' IQB . . . C 3 12.422 7.996 3.796 1 30.61 ? C5' IQB 351 E 1 HETATM 19 C C6' IQB . . . C 3 12.832 8.959 2.714 1 30.89 ? C6' IQB 351 E 1 HETATM 20 C C7' IQB . . . C 3 12.831 10.281 2.932 1 31.42 ? C7' IQB 351 E 1 HETATM 21 C C1' IQB . . . C 3 13.236 11.261 1.863 1 34.23 ? C1' IQB 351 E 1 HETATM 22 C C2B IQB . . . C 3 14.068 10.882 0.799 1 35.29 ? C2B IQB 351 E 1 HETATM 23 C C3B IQB . . . C 3 14.427 11.815 -0.183 1 39.26 ? C3B IQB 351 E 1 HETATM 24 C C4' IQB . . . C 3 13.954 13.131 -0.1 1 41.73 ? C4' IQB 351 E 1 HETATM 25 BR BR4' IQB . . . C 3 14.422 14.388 -1.388 1 49.78 ? BR4' IQB 351 E 1 HETATM 26 C C5B IQB . . . C 3 13.128 13.511 0.956 1 39.14 ? C5B IQB 351 E 1 HETATM 27 C C6B IQB . . . C 3 12.772 12.576 1.932 1 36.46 ? C6B IQB 351 E 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 27 #