data_1YEC
#
_model_server_result.job_id            RZiBnxHg1FoobCmRI_6oTw 
_model_server_result.datetime_utc      '2024-10-12 16:37:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1yec 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":220}' 
#
_entry.id    1YEC 
#
_exptl.entry_id    1YEC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1YEC 
_cell.length_a            78.18 
_cell.length_b            78.18 
_cell.length_c            158.94 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1YEC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L 1 1 
A,C,D,E,F,G,H,I,K 2 1 
B,J,L 2 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_665 x-y+1,-y+1,-z+2/3 1 0 0 0 -1 0 0 0 -1 39.09 67.705866 105.96 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 93 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf2 A SG CYS 139 L CYS 134 1_555 A SG CYS 199 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
disulf ? disulf4 B SG CYS 150 H CYS 140 1_555 B SG CYS 205 H CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
metalc ? metalc1 A NE2 HIS 54 L HIS 49 1_555 E ZN ZN . L ZN 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
metalc ? metalc2 A OD2 ASP 65 L ASP 60 4_456 I ZN ZN . L ZN 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? 
metalc ? metalc3 A ND1 HIS 98 L HIS 93 1_555 F ZN ZN . L ZN 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? 
metalc ? metalc4 A OD2 ASP 156 L ASP 151 1_555 G ZN ZN . L ZN 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? 
metalc ? metalc5 A ND1 HIS 194 L HIS 189 1_555 G ZN ZN . L ZN 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? 
metalc ? metalc6 C ZN ZN . L ZN 215 1_555 K O HOH . L HOH 270 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 1.643 ? 
metalc ? metalc7 C ZN ZN . L ZN 215 1_555 K O HOH . L HOH 271 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 1.636 ? 
metalc ? metalc8 D ZN ZN . L ZN 216 1_555 K O HOH . L HOH 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.626 ? 
metalc ? metalc9 D ZN ZN . L ZN 216 1_555 K O HOH . L HOH 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? 
metalc ? metalc10 E ZN ZN . L ZN 217 1_555 K O HOH . L HOH 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.638 ? 
metalc ? metalc11 E ZN ZN . L ZN 217 1_555 B OD1 ASP 107 H ASP 100 1_555 ? ? ? C ? ? ? ? ? ? ? ? 2.18 ? 
metalc ? metalc12 E ZN ZN . L ZN 217 1_555 L O HOH . H HOH 580 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.653 ? 
metalc ? metalc13 F ZN ZN . L ZN 218 1_555 K O HOH . L HOH 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? 
metalc ? metalc14 F ZN ZN . L ZN 218 1_555 K O HOH . L HOH 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.661 ? 
metalc ? metalc15 F ZN ZN . L ZN 218 1_555 B OD1 ASP 183 H ASP 181 5_665 ? ? ? ? ? ? ? ? ? ? ? ? 1.794 ? 
metalc ? metalc16 G ZN ZN . L ZN 219 1_555 K O HOH . L HOH 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.674 ? 
metalc ? metalc17 G ZN ZN . L ZN 219 1_555 K O HOH . L HOH 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? 
metalc ? metalc18 H ZN ZN . L ZN 220 1_555 K O HOH . L HOH 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.673 ? 
metalc ? metalc19 H ZN ZN . L ZN 220 1_555 K O HOH . L HOH 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.692 ? 
metalc ? metalc20 H ZN ZN . L ZN 220 1_555 K O HOH . L HOH 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? 
metalc ? metalc21 H ZN ZN . L ZN 220 1_555 K O HOH . L HOH 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.599 ? 
metalc ? metalc22 I ZN ZN . L ZN 221 1_555 K O HOH . L HOH 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.773 ? 
metalc ? metalc23 I ZN ZN . L ZN 221 1_555 K O HOH . L HOH 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.759 ? 
metalc ? metalc24 I ZN ZN . L ZN 221 1_555 K O HOH . L HOH 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1YEC 
_atom_sites.fract_transf_matrix[1][1]    0.012791 
_atom_sites.fract_transf_matrix[1][2]    0.007385 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01477 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006292 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ZN L 1 215 1 ZN ZN . 
D 3 ZN L 1 216 2 ZN ZN . 
E 3 ZN L 1 217 3 ZN ZN . 
F 3 ZN L 1 218 4 ZN ZN . 
G 3 ZN L 1 219 5 ZN ZN . 
H 3 ZN L 1 220 6 ZN ZN . 
I 3 ZN L 1 221 7 ZN ZN . 
J 4 PNB H 1 551 551 PNB PNB . 
K 5 HOH L 1 222 1 HOH HOH . 
K 5 HOH L 2 223 2 HOH HOH . 
K 5 HOH L 3 224 4 HOH HOH . 
K 5 HOH L 4 225 5 HOH HOH . 
K 5 HOH L 5 226 6 HOH HOH . 
K 5 HOH L 6 227 7 HOH HOH . 
K 5 HOH L 7 228 10 HOH HOH . 
K 5 HOH L 8 229 16 HOH HOH . 
K 5 HOH L 9 230 17 HOH HOH . 
K 5 HOH L 10 231 18 HOH HOH . 
K 5 HOH L 11 232 20 HOH HOH . 
K 5 HOH L 12 233 21 HOH HOH . 
K 5 HOH L 13 234 23 HOH HOH . 
K 5 HOH L 14 235 24 HOH HOH . 
K 5 HOH L 15 236 26 HOH HOH . 
K 5 HOH L 16 237 28 HOH HOH . 
K 5 HOH L 17 238 30 HOH HOH . 
K 5 HOH L 18 239 31 HOH HOH . 
K 5 HOH L 19 240 36 HOH HOH . 
K 5 HOH L 20 241 41 HOH HOH . 
K 5 HOH L 21 242 43 HOH HOH . 
K 5 HOH L 22 243 44 HOH HOH . 
K 5 HOH L 23 244 45 HOH HOH . 
K 5 HOH L 24 245 46 HOH HOH . 
K 5 HOH L 25 246 47 HOH HOH . 
K 5 HOH L 26 247 48 HOH HOH . 
K 5 HOH L 27 248 50 HOH HOH . 
K 5 HOH L 28 249 51 HOH HOH . 
K 5 HOH L 29 250 52 HOH HOH . 
K 5 HOH L 30 251 53 HOH HOH . 
K 5 HOH L 31 252 54 HOH HOH . 
K 5 HOH L 32 253 55 HOH HOH . 
K 5 HOH L 33 254 57 HOH HOH . 
K 5 HOH L 34 255 60 HOH HOH . 
K 5 HOH L 35 256 61 HOH HOH . 
K 5 HOH L 36 257 62 HOH HOH . 
K 5 HOH L 37 258 63 HOH HOH . 
K 5 HOH L 38 259 66 HOH HOH . 
K 5 HOH L 39 260 68 HOH HOH . 
K 5 HOH L 40 261 69 HOH HOH . 
K 5 HOH L 41 262 70 HOH HOH . 
K 5 HOH L 42 263 71 HOH HOH . 
K 5 HOH L 43 264 75 HOH HOH . 
K 5 HOH L 44 265 77 HOH HOH . 
K 5 HOH L 45 266 78 HOH HOH . 
K 5 HOH L 46 267 79 HOH HOH . 
K 5 HOH L 47 268 82 HOH HOH . 
K 5 HOH L 48 269 83 HOH HOH . 
K 5 HOH L 49 270 87 HOH HOH . 
K 5 HOH L 50 271 88 HOH HOH . 
K 5 HOH L 51 272 89 HOH HOH . 
K 5 HOH L 52 273 90 HOH HOH . 
K 5 HOH L 53 274 91 HOH HOH . 
K 5 HOH L 54 275 94 HOH HOH . 
K 5 HOH L 55 276 98 HOH HOH . 
K 5 HOH L 56 277 100 HOH HOH . 
K 5 HOH L 57 278 101 HOH HOH . 
K 5 HOH L 58 279 103 HOH HOH . 
K 5 HOH L 59 280 104 HOH HOH . 
K 5 HOH L 60 281 105 HOH HOH . 
K 5 HOH L 61 282 107 HOH HOH . 
K 5 HOH L 62 283 109 HOH HOH . 
K 5 HOH L 63 284 110 HOH HOH . 
K 5 HOH L 64 285 111 HOH HOH . 
K 5 HOH L 65 286 112 HOH HOH . 
K 5 HOH L 66 287 113 HOH HOH . 
K 5 HOH L 67 288 115 HOH HOH . 
K 5 HOH L 68 289 116 HOH HOH . 
K 5 HOH L 69 290 118 HOH HOH . 
K 5 HOH L 70 291 120 HOH HOH . 
K 5 HOH L 71 292 121 HOH HOH . 
K 5 HOH L 72 293 125 HOH HOH . 
K 5 HOH L 73 294 126 HOH HOH . 
K 5 HOH L 74 295 127 HOH HOH . 
K 5 HOH L 75 296 128 HOH HOH . 
K 5 HOH L 76 297 129 HOH HOH . 
K 5 HOH L 77 298 132 HOH HOH . 
K 5 HOH L 78 299 136 HOH HOH . 
K 5 HOH L 79 300 138 HOH HOH . 
K 5 HOH L 80 301 139 HOH HOH . 
K 5 HOH L 81 302 140 HOH HOH . 
K 5 HOH L 82 303 141 HOH HOH . 
K 5 HOH L 83 304 142 HOH HOH . 
K 5 HOH L 84 305 144 HOH HOH . 
K 5 HOH L 85 306 145 HOH HOH . 
K 5 HOH L 86 307 146 HOH HOH . 
K 5 HOH L 87 308 149 HOH HOH . 
L 5 HOH H 1 552 3 HOH HOH . 
L 5 HOH H 2 553 8 HOH HOH . 
L 5 HOH H 3 554 9 HOH HOH . 
L 5 HOH H 4 555 11 HOH HOH . 
L 5 HOH H 5 556 12 HOH HOH . 
L 5 HOH H 6 557 13 HOH HOH . 
L 5 HOH H 7 558 14 HOH HOH . 
L 5 HOH H 8 559 15 HOH HOH . 
L 5 HOH H 9 560 19 HOH HOH . 
L 5 HOH H 10 561 22 HOH HOH . 
L 5 HOH H 11 562 25 HOH HOH . 
L 5 HOH H 12 563 27 HOH HOH . 
L 5 HOH H 13 564 29 HOH HOH . 
L 5 HOH H 14 565 32 HOH HOH . 
L 5 HOH H 15 566 33 HOH HOH . 
L 5 HOH H 16 567 34 HOH HOH . 
L 5 HOH H 17 568 35 HOH HOH . 
L 5 HOH H 18 569 37 HOH HOH . 
L 5 HOH H 19 570 38 HOH HOH . 
L 5 HOH H 20 571 39 HOH HOH . 
L 5 HOH H 21 572 40 HOH HOH . 
L 5 HOH H 22 573 42 HOH HOH . 
L 5 HOH H 23 574 49 HOH HOH . 
L 5 HOH H 24 575 56 HOH HOH . 
L 5 HOH H 25 576 58 HOH HOH . 
L 5 HOH H 26 577 59 HOH HOH . 
L 5 HOH H 27 578 64 HOH HOH . 
L 5 HOH H 28 579 65 HOH HOH . 
L 5 HOH H 29 580 67 HOH HOH . 
L 5 HOH H 30 581 72 HOH HOH . 
L 5 HOH H 31 582 73 HOH HOH . 
L 5 HOH H 32 583 74 HOH HOH . 
L 5 HOH H 33 584 76 HOH HOH . 
L 5 HOH H 34 585 80 HOH HOH . 
L 5 HOH H 35 586 81 HOH HOH . 
L 5 HOH H 36 587 84 HOH HOH . 
L 5 HOH H 37 588 85 HOH HOH . 
L 5 HOH H 38 589 86 HOH HOH . 
L 5 HOH H 39 590 92 HOH HOH . 
L 5 HOH H 40 591 93 HOH HOH . 
L 5 HOH H 41 592 95 HOH HOH . 
L 5 HOH H 42 593 96 HOH HOH . 
L 5 HOH H 43 594 97 HOH HOH . 
L 5 HOH H 44 595 99 HOH HOH . 
L 5 HOH H 45 596 102 HOH HOH . 
L 5 HOH H 46 597 106 HOH HOH . 
L 5 HOH H 47 598 108 HOH HOH . 
L 5 HOH H 48 599 114 HOH HOH . 
L 5 HOH H 49 600 117 HOH HOH . 
L 5 HOH H 50 601 119 HOH HOH . 
L 5 HOH H 51 602 122 HOH HOH . 
L 5 HOH H 52 603 123 HOH HOH . 
L 5 HOH H 53 604 124 HOH HOH . 
L 5 HOH H 54 605 130 HOH HOH . 
L 5 HOH H 55 606 131 HOH HOH . 
L 5 HOH H 56 607 133 HOH HOH . 
L 5 HOH H 57 608 134 HOH HOH . 
L 5 HOH H 58 609 135 HOH HOH . 
L 5 HOH H 59 610 137 HOH HOH . 
L 5 HOH H 60 611 143 HOH HOH . 
L 5 HOH H 61 612 147 HOH HOH . 
L 5 HOH H 62 613 148 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         H 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -47.907 
_atom_site.Cartn_y               32.126 
_atom_site.Cartn_z               69.903 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        27.88 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           220 
_atom_site.auth_asym_id          L 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#