data_1YEF # _model_server_result.job_id yPK9-DhmMBf-kZzILfA_qw _model_server_result.datetime_utc '2025-02-26 20:01:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yef # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":221}' # _entry.id 1YEF # _exptl.entry_id 1YEF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1YEF _cell.length_a 78.2 _cell.length_b 78.2 _cell.length_c 158.7 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YEF _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 93 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 139 L CYS 134 1_555 A SG CYS 199 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf4 B SG CYS 150 H CYS 140 1_555 B SG CYS 205 H CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc1 A NE2 HIS 54 L HIS 49 1_555 E ZN ZN . L ZN 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc2 A OD2 ASP 65 L ASP 60 4_456 I ZN ZN . L ZN 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc3 A ND1 HIS 98 L HIS 93 1_555 F ZN ZN . L ZN 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc4 A OD2 ASP 156 L ASP 151 1_555 G ZN ZN . L ZN 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc5 A ND1 HIS 194 L HIS 189 1_555 G ZN ZN . L ZN 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc6 C ZN ZN . L ZN 215 1_555 L O HOH . L HOH 574 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 1.784 ? metalc ? metalc7 C ZN ZN . L ZN 215 1_555 L O HOH . L HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc8 C ZN ZN . L ZN 215 1_555 L O HOH . L HOH 605 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 1.831 ? metalc ? metalc9 C ZN ZN . L ZN 215 1_555 L O HOH . L HOH 637 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.688 ? metalc ? metalc10 C ZN ZN . L ZN 215 1_555 L O HOH . L HOH 645 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc11 D ZN ZN . L ZN 216 1_555 L O HOH . L HOH 555 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? metalc ? metalc12 D ZN ZN . L ZN 216 1_555 L O HOH . L HOH 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.796 ? metalc ? metalc13 D ZN ZN . L ZN 216 1_555 L O HOH . L HOH 589 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc14 E ZN ZN . L ZN 217 1_555 L O HOH . L HOH 592 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.639 ? metalc ? metalc15 E ZN ZN . L ZN 217 1_555 L O HOH . L HOH 597 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.536 ? metalc ? metalc16 E ZN ZN . L ZN 217 1_555 B OD1 ASP 107 H ASP 100 1_555 ? ? ? C ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc17 F ZN ZN . L ZN 218 1_555 L O HOH . L HOH 589 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.841 ? metalc ? metalc18 F ZN ZN . L ZN 218 1_555 L O HOH . L HOH 642 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.675 ? metalc ? metalc19 F ZN ZN . L ZN 218 1_555 B OD1 ASP 183 H ASP 181 5_665 ? ? ? ? ? ? ? ? ? ? ? ? 1.789 ? metalc ? metalc20 G ZN ZN . L ZN 219 1_555 L O HOH . L HOH 587 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc21 G ZN ZN . L ZN 219 1_555 L O HOH . L HOH 604 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 1.568 ? metalc ? metalc22 G ZN ZN . L ZN 219 1_555 L O HOH . L HOH 645 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc23 H ZN ZN . L ZN 220 1_555 L O HOH . L HOH 587 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.773 ? metalc ? metalc24 H ZN ZN . L ZN 220 1_555 L O HOH . L HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc25 H ZN ZN . L ZN 220 1_555 L O HOH . L HOH 615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.75 ? metalc ? metalc26 H ZN ZN . L ZN 220 1_555 L O HOH . L HOH 645 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc27 I ZN ZN . L ZN 221 1_555 L O HOH . L HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.615 ? metalc ? metalc28 I ZN ZN . L ZN 221 1_555 L O HOH . L HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.65 ? metalc ? metalc29 I ZN ZN . L ZN 221 1_555 L O HOH . L HOH 608 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc30 I ZN ZN . L ZN 221 1_555 L O HOH . L HOH 645 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.716 ? metalc ? metalc31 J ZN ZN . L ZN 222 1_555 L O HOH . L HOH 621 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.562 ? metalc ? metalc32 J ZN ZN . L ZN 222 1_555 L O HOH . L HOH 642 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1YEF _atom_sites.fract_transf_matrix[1][1] 0.012788 _atom_sites.fract_transf_matrix[1][2] 0.007383 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014766 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006301 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN L 1 215 1 ZN ZN . D 3 ZN L 1 216 2 ZN ZN . E 3 ZN L 1 217 3 ZN ZN . F 3 ZN L 1 218 4 ZN ZN . G 3 ZN L 1 219 5 ZN ZN . H 3 ZN L 1 220 6 ZN ZN . I 3 ZN L 1 221 7 ZN ZN . J 3 ZN L 1 222 8 ZN ZN . K 4 PNC L 1 551 551 PNC PNC . L 5 HOH L 1 552 1 HOH HOH . L 5 HOH L 2 553 3 HOH HOH . L 5 HOH L 3 554 6 HOH HOH . L 5 HOH L 4 555 8 HOH HOH . L 5 HOH L 5 556 9 HOH HOH . L 5 HOH L 6 557 10 HOH HOH . L 5 HOH L 7 558 16 HOH HOH . L 5 HOH L 8 559 17 HOH HOH . L 5 HOH L 9 560 18 HOH HOH . L 5 HOH L 10 561 19 HOH HOH . L 5 HOH L 11 562 20 HOH HOH . L 5 HOH L 12 563 21 HOH HOH . L 5 HOH L 13 564 22 HOH HOH . L 5 HOH L 14 565 23 HOH HOH . L 5 HOH L 15 566 24 HOH HOH . L 5 HOH L 16 567 26 HOH HOH . L 5 HOH L 17 568 28 HOH HOH . L 5 HOH L 18 569 30 HOH HOH . L 5 HOH L 19 570 31 HOH HOH . L 5 HOH L 20 571 34 HOH HOH . L 5 HOH L 21 572 36 HOH HOH . L 5 HOH L 22 573 41 HOH HOH . L 5 HOH L 23 574 43 HOH HOH . L 5 HOH L 24 575 44 HOH HOH . L 5 HOH L 25 576 45 HOH HOH . L 5 HOH L 26 577 46 HOH HOH . L 5 HOH L 27 578 47 HOH HOH . L 5 HOH L 28 579 48 HOH HOH . L 5 HOH L 29 580 50 HOH HOH . L 5 HOH L 30 581 51 HOH HOH . L 5 HOH L 31 582 52 HOH HOH . L 5 HOH L 32 583 53 HOH HOH . L 5 HOH L 33 584 54 HOH HOH . L 5 HOH L 34 585 55 HOH HOH . L 5 HOH L 35 586 57 HOH HOH . L 5 HOH L 36 587 61 HOH HOH . L 5 HOH L 37 588 62 HOH HOH . L 5 HOH L 38 589 63 HOH HOH . L 5 HOH L 39 590 64 HOH HOH . L 5 HOH L 40 591 66 HOH HOH . L 5 HOH L 41 592 67 HOH HOH . L 5 HOH L 42 593 69 HOH HOH . L 5 HOH L 43 594 70 HOH HOH . L 5 HOH L 44 595 71 HOH HOH . L 5 HOH L 45 596 73 HOH HOH . L 5 HOH L 46 597 75 HOH HOH . L 5 HOH L 47 598 77 HOH HOH . L 5 HOH L 48 599 78 HOH HOH . L 5 HOH L 49 600 79 HOH HOH . L 5 HOH L 50 601 81 HOH HOH . L 5 HOH L 51 602 82 HOH HOH . L 5 HOH L 52 603 83 HOH HOH . L 5 HOH L 53 604 87 HOH HOH . L 5 HOH L 54 605 88 HOH HOH . L 5 HOH L 55 606 89 HOH HOH . L 5 HOH L 56 607 90 HOH HOH . L 5 HOH L 57 608 91 HOH HOH . L 5 HOH L 58 609 94 HOH HOH . L 5 HOH L 59 610 98 HOH HOH . L 5 HOH L 60 611 100 HOH HOH . L 5 HOH L 61 612 101 HOH HOH . L 5 HOH L 62 613 103 HOH HOH . L 5 HOH L 63 614 104 HOH HOH . L 5 HOH L 64 615 105 HOH HOH . L 5 HOH L 65 616 107 HOH HOH . L 5 HOH L 66 617 109 HOH HOH . L 5 HOH L 67 618 110 HOH HOH . L 5 HOH L 68 619 111 HOH HOH . L 5 HOH L 69 620 112 HOH HOH . L 5 HOH L 70 621 115 HOH HOH . L 5 HOH L 71 622 116 HOH HOH . L 5 HOH L 72 623 118 HOH HOH . L 5 HOH L 73 624 120 HOH HOH . L 5 HOH L 74 625 123 HOH HOH . L 5 HOH L 75 626 125 HOH HOH . L 5 HOH L 76 627 126 HOH HOH . L 5 HOH L 77 628 127 HOH HOH . L 5 HOH L 78 629 128 HOH HOH . L 5 HOH L 79 630 129 HOH HOH . L 5 HOH L 80 631 132 HOH HOH . L 5 HOH L 81 632 134 HOH HOH . L 5 HOH L 82 633 137 HOH HOH . L 5 HOH L 83 634 139 HOH HOH . L 5 HOH L 84 635 141 HOH HOH . L 5 HOH L 85 636 142 HOH HOH . L 5 HOH L 86 637 144 HOH HOH . L 5 HOH L 87 638 147 HOH HOH . L 5 HOH L 88 639 148 HOH HOH . L 5 HOH L 89 640 150 HOH HOH . L 5 HOH L 90 641 151 HOH HOH . L 5 HOH L 91 642 152 HOH HOH . L 5 HOH L 92 643 154 HOH HOH . L 5 HOH L 93 644 155 HOH HOH . L 5 HOH L 94 645 156 HOH HOH . L 5 HOH L 95 646 157 HOH HOH . L 5 HOH L 96 647 158 HOH HOH . M 5 HOH H 1 224 2 HOH HOH . M 5 HOH H 2 225 4 HOH HOH . M 5 HOH H 3 226 5 HOH HOH . M 5 HOH H 4 227 7 HOH HOH . M 5 HOH H 5 228 11 HOH HOH . M 5 HOH H 6 229 12 HOH HOH . M 5 HOH H 7 230 13 HOH HOH . M 5 HOH H 8 231 14 HOH HOH . M 5 HOH H 9 232 15 HOH HOH . M 5 HOH H 10 233 25 HOH HOH . M 5 HOH H 11 234 27 HOH HOH . M 5 HOH H 12 235 29 HOH HOH . M 5 HOH H 13 236 32 HOH HOH . M 5 HOH H 14 237 33 HOH HOH . M 5 HOH H 15 238 35 HOH HOH . M 5 HOH H 16 239 37 HOH HOH . M 5 HOH H 17 240 38 HOH HOH . M 5 HOH H 18 241 39 HOH HOH . M 5 HOH H 19 242 40 HOH HOH . M 5 HOH H 20 243 42 HOH HOH . M 5 HOH H 21 244 49 HOH HOH . M 5 HOH H 22 245 56 HOH HOH . M 5 HOH H 23 246 58 HOH HOH . M 5 HOH H 24 247 59 HOH HOH . M 5 HOH H 25 248 60 HOH HOH . M 5 HOH H 26 249 65 HOH HOH . M 5 HOH H 27 250 68 HOH HOH . M 5 HOH H 28 251 72 HOH HOH . M 5 HOH H 29 252 74 HOH HOH . M 5 HOH H 30 253 76 HOH HOH . M 5 HOH H 31 254 80 HOH HOH . M 5 HOH H 32 255 84 HOH HOH . M 5 HOH H 33 256 85 HOH HOH . M 5 HOH H 34 257 86 HOH HOH . M 5 HOH H 35 258 92 HOH HOH . M 5 HOH H 36 259 93 HOH HOH . M 5 HOH H 37 260 95 HOH HOH . M 5 HOH H 38 261 96 HOH HOH . M 5 HOH H 39 262 97 HOH HOH . M 5 HOH H 40 263 99 HOH HOH . M 5 HOH H 41 264 102 HOH HOH . M 5 HOH H 42 265 106 HOH HOH . M 5 HOH H 43 266 108 HOH HOH . M 5 HOH H 44 267 113 HOH HOH . M 5 HOH H 45 268 114 HOH HOH . M 5 HOH H 46 269 117 HOH HOH . M 5 HOH H 47 270 119 HOH HOH . M 5 HOH H 48 271 121 HOH HOH . M 5 HOH H 49 272 122 HOH HOH . M 5 HOH H 50 273 124 HOH HOH . M 5 HOH H 51 274 130 HOH HOH . M 5 HOH H 52 275 131 HOH HOH . M 5 HOH H 53 276 133 HOH HOH . M 5 HOH H 54 277 135 HOH HOH . M 5 HOH H 55 278 136 HOH HOH . M 5 HOH H 56 279 138 HOH HOH . M 5 HOH H 57 280 140 HOH HOH . M 5 HOH H 58 281 143 HOH HOH . M 5 HOH H 59 282 145 HOH HOH . M 5 HOH H 60 283 146 HOH HOH . M 5 HOH H 61 284 149 HOH HOH . M 5 HOH H 62 285 153 HOH HOH . M 5 HOH H 63 286 159 HOH HOH . M 5 HOH H 64 287 160 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 3 _atom_site.Cartn_x -51.343 _atom_site.Cartn_y 31.977 _atom_site.Cartn_z 70.837 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 29.25 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 221 _atom_site.auth_asym_id L _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 235 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #