data_1YEW # _model_server_result.job_id tNu5X-EhJcSUICSF0ETvNg _model_server_result.datetime_utc '2025-07-03 23:13:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yew # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":3}' # _entry.id 1YEW # _exptl.entry_id 1YEW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 127.092 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DINUCLEAR COPPER ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1YEW _cell.length_a 264.14 _cell.length_b 264.14 _cell.length_c 150.005 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YEW _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 PISA trimeric 3 author_and_software_defined_assembly 3 PISA octadecameric 18 software_defined_assembly 4 PISA octadecameric 18 software_defined_assembly 5 PISA nonameric 9 software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,J,K,L,M,N 1 1 D,E,F,O,P,Q,R,S,T 2 1 G,H,I,U,V,W 3 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W 4 1,2 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W 5 1,3 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W 6 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 150.005 3 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 264.14 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 L N N ? 6 S N N ? 6 V N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 L CU1 CUA . A CUA 3 1_555 A N HIS 1 A HIS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc2 L CU1 CUA . A CUA 3 1_555 A ND1 HIS 1 A HIS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? metalc ? metalc3 L CU2 CUA . A CUA 3 1_555 A ND1 HIS 105 A HIS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.818 ? metalc ? metalc4 L CU1 CUA . A CUA 3 1_555 A NE2 HIS 107 A HIS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc5 L CU2 CUA . A CUA 3 1_555 A NE2 HIS 107 A HIS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc6 J CU CU . A CU 4 1_555 A ND1 HIS 16 A HIS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.871 ? metalc ? metalc7 J CU CU . A CU 4 1_555 A ND1 HIS 40 A HIS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? metalc ? metalc8 A OE1 GLU 25 A GLU 57 1_555 K ZN ZN . A ZN 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? metalc ? metalc9 A OE2 GLU 25 A GLU 57 1_555 K ZN ZN . A ZN 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc10 K ZN ZN . A ZN 800 1_555 D OD1 ASP 296 E ASP 328 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc11 C OD2 ASP 156 C ASP 156 1_555 M ZN ZN . C ZN 661 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc12 C NE2 HIS 160 C HIS 160 1_555 M ZN ZN . C ZN 661 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.729 ? metalc ? metalc13 C NE2 HIS 173 C HIS 173 1_555 M ZN ZN . C ZN 661 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc14 C NE2 HIS 231 C HIS 231 1_555 N ZN ZN . C ZN 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.646 ? metalc ? metalc15 D N HIS 1 E HIS 33 1_555 S CU1 CUA . E CUA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc16 D ND1 HIS 1 E HIS 33 1_555 S CU1 CUA . E CUA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.813 ? metalc ? metalc17 D ND1 HIS 16 E HIS 48 1_555 O CU CU . E CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? metalc ? metalc18 D ND1 HIS 40 E HIS 72 1_555 O CU CU . E CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.793 ? metalc ? metalc19 D ND1 HIS 105 E HIS 137 1_555 S CU2 CUA . E CUA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.808 ? metalc ? metalc20 D NE2 HIS 107 E HIS 139 1_555 S CU1 CUA . E CUA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc21 D NE2 HIS 107 E HIS 139 1_555 S CU2 CUA . E CUA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc22 D OD1 ASP 294 E ASP 326 1_555 P ZN ZN . E ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc23 D OD2 ASP 296 E ASP 328 1_555 P ZN ZN . E ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc24 F OD1 ASP 156 G ASP 156 1_555 T ZN ZN . G ZN 662 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? metalc ? metalc25 F OD2 ASP 156 G ASP 156 1_555 T ZN ZN . G ZN 662 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc26 F NE2 HIS 160 G HIS 160 1_555 T ZN ZN . G ZN 662 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.804 ? metalc ? metalc27 F NE2 HIS 173 G HIS 173 1_555 T ZN ZN . G ZN 662 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.86 ? metalc ? metalc28 G N HIS 1 I HIS 33 1_555 V CU1 CUA . I CUA 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc29 G ND1 HIS 1 I HIS 33 1_555 V CU1 CUA . I CUA 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.801 ? metalc ? metalc30 G ND1 HIS 16 I HIS 48 1_555 U CU CU . I CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.884 ? metalc ? metalc31 G ND1 HIS 40 I HIS 72 1_555 U CU CU . I CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc32 G ND1 HIS 105 I HIS 137 1_555 V CU2 CUA . I CUA 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.838 ? metalc ? metalc33 G NE2 HIS 107 I HIS 139 1_555 V CU1 CUA . I CUA 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc34 G NE2 HIS 107 I HIS 139 1_555 V CU2 CUA . I CUA 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc35 I OD2 ASP 156 K ASP 156 1_555 W ZN ZN . K ZN 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc36 I NE2 HIS 160 K HIS 160 1_555 W ZN ZN . K ZN 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.714 ? metalc ? metalc37 I NE2 HIS 173 K HIS 173 1_555 W ZN ZN . K ZN 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? # _chem_comp.formula Cu2 _chem_comp.formula_weight 127.092 _chem_comp.id CUA _chem_comp.mon_nstd_flag . _chem_comp.name 'DINUCLEAR COPPER ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _chem_comp_bond.atom_id_1 CU1 _chem_comp_bond.atom_id_2 CU2 _chem_comp_bond.comp_id CUA _chem_comp_bond.value_order sing _chem_comp_bond.pdbx_ordinal 70 _chem_comp_bond.pdbx_stereo_config n _chem_comp_bond.pdbx_aromatic_flag n # _atom_sites.entry_id 1YEW _atom_sites.fract_transf_matrix[1][1] 0.003786 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003786 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006666 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 4 CU A 1 4 7 CU CU . K 5 ZN A 1 800 8 ZN ZN . L 6 CUA A 1 3 3 CUA CUA . M 5 ZN C 1 661 260 ZN ZN . N 5 ZN C 1 700 10 ZN ZN . O 4 CU E 1 501 7 CU CU . P 5 ZN E 1 900 9 ZN ZN . Q 5 ZN E 1 701 12 ZN ZN . R 5 ZN E 1 702 13 ZN ZN . S 6 CUA E 1 500 3 CUA CUA . T 5 ZN G 1 662 260 ZN ZN . U 4 CU I 1 601 7 CU CU . V 6 CUA I 1 600 3 CUA CUA . W 5 ZN K 1 663 260 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CU CU1 CUA . . . L 6 37.529 129.666 82.258 1 74.49 ? CU1 CUA 3 A 1 HETATM 2 CU CU2 CUA . . . L 6 35.285 130.67 83.034 1 82.93 ? CU2 CUA 3 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 42 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 2 #