data_1YFC # _model_server_result.job_id 1NgG4jRJymY5X1EaJH8NAA _model_server_result.datetime_utc '2024-11-18 09:46:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1yfc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":104}' # _entry.id 1YFC # _exptl.entry_id 1YFC _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1YFC _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YFC _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 19 A CYS 14 1_555 B CAB HEC . A HEC 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.796 ? covale ? covale2 A SG CYS 22 A CYS 17 1_555 B CAC HEC . A HEC 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.748 ? covale ? covale3 A C PRO 76 A PRO 71 1_555 A N M3L 77 A M3L 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale4 A C M3L 77 A M3L 72 1_555 A N LYS 78 A LYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? metalc ? metalc1 A NE2 HIS 23 A HIS 18 1_555 B FE HEC . A HEC 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc2 A SD MET 85 A MET 80 1_555 B FE HEC . A HEC 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1YFC _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id HEC _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 104 _pdbx_nonpoly_scheme.auth_seq_num 104 _pdbx_nonpoly_scheme.pdb_mon_id HEC _pdbx_nonpoly_scheme.auth_mon_id HEC _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . B 2 -0.114 1.875 3.479 1 0 ? FE HEC 104 A 1 HETATM 2 C CHA HEC . . . B 2 1.126 4.345 1.427 1 0 ? CHA HEC 104 A 1 HETATM 3 C CHB HEC . . . B 2 -0.702 -0.02 0.805 1 0 ? CHB HEC 104 A 1 HETATM 4 C CHC HEC . . . B 2 -0.831 -0.557 5.596 1 0 ? CHC HEC 104 A 1 HETATM 5 C CHD HEC . . . B 2 -0.104 4.113 6.024 1 0 ? CHD HEC 104 A 1 HETATM 6 N NA HEC . . . B 2 0.161 2.164 1.562 1 0 ? NA HEC 104 A 1 HETATM 7 C C1A HEC . . . B 2 0.664 3.177 0.839 1 0 ? C1A HEC 104 A 1 HETATM 8 C C2A HEC . . . B 2 0.962 2.781 -0.558 1 0 ? C2A HEC 104 A 1 HETATM 9 C C3A HEC . . . B 2 0.416 1.573 -0.7 1 0 ? C3A HEC 104 A 1 HETATM 10 C C4A HEC . . . B 2 -0.055 1.12 0.534 1 0 ? C4A HEC 104 A 1 HETATM 11 C CMA HEC . . . B 2 0.43 0.711 -2.019 1 0 ? CMA HEC 104 A 1 HETATM 12 C CAA HEC . . . B 2 1.536 3.751 -1.551 1 0 ? CAA HEC 104 A 1 HETATM 13 C CBA HEC . . . B 2 0.632 5.025 -1.602 1 0 ? CBA HEC 104 A 1 HETATM 14 C CGA HEC . . . B 2 1.287 6.376 -1.355 1 0 ? CGA HEC 104 A 1 HETATM 15 O O1A HEC . . . B 2 0.795 7.001 -0.409 1 0 ? O1A HEC 104 A 1 HETATM 16 O O2A HEC . . . B 2 2.243 6.758 -2.064 1 0 ? O2A HEC 104 A 1 HETATM 17 N NB HEC . . . B 2 -0.676 0.05 3.258 1 0 ? NB HEC 104 A 1 HETATM 18 C C1B HEC . . . B 2 -1.071 -0.511 2.05 1 0 ? C1B HEC 104 A 1 HETATM 19 C C2B HEC . . . B 2 -1.503 -1.868 2.372 1 0 ? C2B HEC 104 A 1 HETATM 20 C C3B HEC . . . B 2 -1.488 -2.076 3.712 1 0 ? C3B HEC 104 A 1 HETATM 21 C C4B HEC . . . B 2 -1.013 -0.819 4.225 1 0 ? C4B HEC 104 A 1 HETATM 22 C CMB HEC . . . B 2 -2.054 -2.835 1.261 1 0 ? CMB HEC 104 A 1 HETATM 23 C CAB HEC . . . B 2 -1.915 -3.251 4.553 1 0 ? CAB HEC 104 A 1 HETATM 24 C CBB HEC . . . B 2 -1.113 -4.536 4.293 1 0 ? CBB HEC 104 A 1 HETATM 25 N NC HEC . . . B 2 -0.406 1.847 5.466 1 0 ? NC HEC 104 A 1 HETATM 26 C C1C HEC . . . B 2 -0.689 0.753 6.226 1 0 ? C1C HEC 104 A 1 HETATM 27 C C2C HEC . . . B 2 -0.942 0.958 7.597 1 0 ? C2C HEC 104 A 1 HETATM 28 C C3C HEC . . . B 2 -0.689 2.277 7.73 1 0 ? C3C HEC 104 A 1 HETATM 29 C C4C HEC . . . B 2 -0.445 2.849 6.408 1 0 ? C4C HEC 104 A 1 HETATM 30 C CMC HEC . . . B 2 -1.288 -0.038 8.661 1 0 ? CMC HEC 104 A 1 HETATM 31 C CAC HEC . . . B 2 -0.947 3.252 8.921 1 0 ? CAC HEC 104 A 1 HETATM 32 C CBC HEC . . . B 2 -0.212 2.8 10.203 1 0 ? CBC HEC 104 A 1 HETATM 33 N ND HEC . . . B 2 0.404 3.882 3.705 1 0 ? ND HEC 104 A 1 HETATM 34 C C1D HEC . . . B 2 0.338 4.641 4.868 1 0 ? C1D HEC 104 A 1 HETATM 35 C C2D HEC . . . B 2 0.795 5.928 4.616 1 0 ? C2D HEC 104 A 1 HETATM 36 C C3D HEC . . . B 2 1.176 5.991 3.33 1 0 ? C3D HEC 104 A 1 HETATM 37 C C4D HEC . . . B 2 0.998 4.658 2.761 1 0 ? C4D HEC 104 A 1 HETATM 38 C CMD HEC . . . B 2 0.94 7.1 5.691 1 0 ? CMD HEC 104 A 1 HETATM 39 C CAD HEC . . . B 2 1.877 7.2 2.661 1 0 ? CAD HEC 104 A 1 HETATM 40 C CBD HEC . . . B 2 0.957 8.386 2.485 1 0 ? CBD HEC 104 A 1 HETATM 41 C CGD HEC . . . B 2 1.497 9.766 2.813 1 0 ? CGD HEC 104 A 1 HETATM 42 O O1D HEC . . . B 2 1.815 9.986 4.013 1 0 ? O1D HEC 104 A 1 HETATM 43 O O2D HEC . . . B 2 1.407 10.594 1.879 1 0 ? O2D HEC 104 A 1 HETATM 44 H HHA HEC . . . B 2 1.12 5.13 0.686 1 0 ? HHA HEC 104 A 1 HETATM 45 H HHB HEC . . . B 2 -0.836 -0.762 0.031 1 0 ? HHB HEC 104 A 1 HETATM 46 H HHC HEC . . . B 2 -1.295 -1.196 6.333 1 0 ? HHC HEC 104 A 1 HETATM 47 H HHD HEC . . . B 2 0.227 4.831 6.76 1 0 ? HHD HEC 104 A 1 HETATM 48 H HMA1 HEC . . . B 2 1.243 -0.014 -1.972 1 0 ? HMA1 HEC 104 A 1 HETATM 49 H HMA2 HEC . . . B 2 -0.519 0.185 -2.12 1 0 ? HMA2 HEC 104 A 1 HETATM 50 H HMA3 HEC . . . B 2 0.576 1.364 -2.879 1 0 ? HMA3 HEC 104 A 1 HETATM 51 H HAA1 HEC . . . B 2 2.545 4.029 -1.247 1 0 ? HAA1 HEC 104 A 1 HETATM 52 H HAA2 HEC . . . B 2 1.569 3.287 -2.536 1 0 ? HAA2 HEC 104 A 1 HETATM 53 H HBA1 HEC . . . B 2 0.176 5.109 -2.588 1 0 ? HBA1 HEC 104 A 1 HETATM 54 H HBA2 HEC . . . B 2 -0.15 4.948 -0.846 1 0 ? HBA2 HEC 104 A 1 HETATM 55 H HMB1 HEC . . . B 2 -1.222 -3.242 0.688 1 0 ? HMB1 HEC 104 A 1 HETATM 56 H HMB2 HEC . . . B 2 -2.606 -3.649 1.729 1 0 ? HMB2 HEC 104 A 1 HETATM 57 H HMB3 HEC . . . B 2 -2.717 -2.282 0.595 1 0 ? HMB3 HEC 104 A 1 HETATM 58 H HAB HEC . . . B 2 -1.666 -3.061 5.597 1 0 ? HAB HEC 104 A 1 HETATM 59 H HBB1 HEC . . . B 2 -0.09 -4.404 4.646 1 0 ? HBB1 HEC 104 A 1 HETATM 60 H HBB2 HEC . . . B 2 -1.575 -5.367 4.826 1 0 ? HBB2 HEC 104 A 1 HETATM 61 H HBB3 HEC . . . B 2 -1.104 -4.749 3.225 1 0 ? HBB3 HEC 104 A 1 HETATM 62 H HMC1 HEC . . . B 2 -0.848 -1.004 8.412 1 0 ? HMC1 HEC 104 A 1 HETATM 63 H HMC2 HEC . . . B 2 -0.897 0.302 9.62 1 0 ? HMC2 HEC 104 A 1 HETATM 64 H HMC3 HEC . . . B 2 -2.371 -0.139 8.726 1 0 ? HMC3 HEC 104 A 1 HETATM 65 H HAC HEC . . . B 2 -0.586 4.247 8.661 1 0 ? HAC HEC 104 A 1 HETATM 66 H HBC1 HEC . . . B 2 0.521 3.556 10.489 1 0 ? HBC1 HEC 104 A 1 HETATM 67 H HBC2 HEC . . . B 2 -0.933 2.671 11.01 1 0 ? HBC2 HEC 104 A 1 HETATM 68 H HBC3 HEC . . . B 2 0.297 1.854 10.017 1 0 ? HBC3 HEC 104 A 1 HETATM 69 H HMD1 HEC . . . B 2 1.876 7.633 5.525 1 0 ? HMD1 HEC 104 A 1 HETATM 70 H HMD2 HEC . . . B 2 0.105 7.793 5.588 1 0 ? HMD2 HEC 104 A 1 HETATM 71 H HMD3 HEC . . . B 2 0.937 6.676 6.695 1 0 ? HMD3 HEC 104 A 1 HETATM 72 H HAD1 HEC . . . B 2 2.718 7.52 3.276 1 0 ? HAD1 HEC 104 A 1 HETATM 73 H HAD2 HEC . . . B 2 2.238 6.91 1.674 1 0 ? HAD2 HEC 104 A 1 HETATM 74 H HBD1 HEC . . . B 2 0.639 8.448 1.444 1 0 ? HBD1 HEC 104 A 1 HETATM 75 H HBD2 HEC . . . B 2 0.083 8.267 3.125 1 0 ? HBD2 HEC 104 A 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 64 _model_server_stats.query_time_ms 8800 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 75 #