data_1YFK
#
_model_server_result.job_id            OboAbKrxlmbmBljvWjxrLw 
_model_server_result.datetime_utc      '2024-10-15 01:26:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1yfk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":500}' 
#
_entry.id    1YFK 
#
_exptl.entry_id    1YFK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              192.124 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CITRIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.36 
_cell.angle_gamma         90 
_cell.entry_id            1YFK 
_cell.length_a            42.861 
_cell.length_b            65.745 
_cell.length_c            124.812 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1YFK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
_chem_comp.formula           'C6 H8 O7' 
_chem_comp.formula_weight    192.124 
_chem_comp.id                CIT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CITRIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 CIT doub 70 n n 
C1 O2 CIT sing 71 n n 
C1 C2 CIT sing 72 n n 
O2 HO2 CIT sing 73 n n 
C2 C3 CIT sing 74 n n 
C2 H21 CIT sing 75 n n 
C2 H22 CIT sing 76 n n 
C3 O7 CIT sing 77 n n 
C3 C4 CIT sing 78 n n 
C3 C6 CIT sing 79 n n 
O7 HO7 CIT sing 80 n n 
C4 C5 CIT sing 81 n n 
C4 H41 CIT sing 82 n n 
C4 H42 CIT sing 83 n n 
C5 O3 CIT doub 84 n n 
C5 O4 CIT sing 85 n n 
O4 HO4 CIT sing 86 n n 
C6 O5 CIT doub 87 n n 
C6 O6 CIT sing 88 n n 
O6 HO6 CIT sing 89 n n 
#
_atom_sites.entry_id                     1YFK 
_atom_sites.fract_transf_matrix[1][1]    0.023331 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001779 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01521 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008035 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CL A 1 263 1 CL CL . 
D 3 CIT A 1 500 500 CIT CIT . 
E 3 CIT B 1 1500 500 CIT CIT . 
F 4 HOH A 1 501 3 HOH HOH . 
F 4 HOH A 2 502 4 HOH HOH . 
F 4 HOH A 3 503 7 HOH HOH . 
F 4 HOH A 4 504 12 HOH HOH . 
F 4 HOH A 5 505 13 HOH HOH . 
F 4 HOH A 6 506 15 HOH HOH . 
F 4 HOH A 7 507 17 HOH HOH . 
F 4 HOH A 8 508 22 HOH HOH . 
F 4 HOH A 9 509 23 HOH HOH . 
F 4 HOH A 10 510 24 HOH HOH . 
F 4 HOH A 11 511 26 HOH HOH . 
F 4 HOH A 12 512 27 HOH HOH . 
F 4 HOH A 13 513 28 HOH HOH . 
F 4 HOH A 14 514 35 HOH HOH . 
F 4 HOH A 15 515 36 HOH HOH . 
F 4 HOH A 16 516 37 HOH HOH . 
F 4 HOH A 17 517 39 HOH HOH . 
F 4 HOH A 18 518 40 HOH HOH . 
F 4 HOH A 19 519 43 HOH HOH . 
F 4 HOH A 20 520 46 HOH HOH . 
F 4 HOH A 21 521 48 HOH HOH . 
F 4 HOH A 22 522 50 HOH HOH . 
F 4 HOH A 23 523 52 HOH HOH . 
F 4 HOH A 24 524 54 HOH HOH . 
F 4 HOH A 25 525 56 HOH HOH . 
F 4 HOH A 26 526 58 HOH HOH . 
F 4 HOH A 27 527 60 HOH HOH . 
F 4 HOH A 28 528 62 HOH HOH . 
F 4 HOH A 29 529 65 HOH HOH . 
F 4 HOH A 30 530 67 HOH HOH . 
F 4 HOH A 31 531 71 HOH HOH . 
F 4 HOH A 32 532 74 HOH HOH . 
F 4 HOH A 33 533 76 HOH HOH . 
F 4 HOH A 34 534 79 HOH HOH . 
F 4 HOH A 35 535 80 HOH HOH . 
F 4 HOH A 36 536 81 HOH HOH . 
F 4 HOH A 37 537 84 HOH HOH . 
F 4 HOH A 38 538 85 HOH HOH . 
F 4 HOH A 39 539 86 HOH HOH . 
F 4 HOH A 40 540 88 HOH HOH . 
F 4 HOH A 41 541 90 HOH HOH . 
F 4 HOH A 42 542 93 HOH HOH . 
F 4 HOH A 43 543 94 HOH HOH . 
F 4 HOH A 44 544 95 HOH HOH . 
F 4 HOH A 45 545 97 HOH HOH . 
F 4 HOH A 46 546 99 HOH HOH . 
F 4 HOH A 47 547 104 HOH HOH . 
F 4 HOH A 48 548 105 HOH HOH . 
F 4 HOH A 49 549 107 HOH HOH . 
F 4 HOH A 50 550 108 HOH HOH . 
F 4 HOH A 51 551 109 HOH HOH . 
F 4 HOH A 52 552 110 HOH HOH . 
F 4 HOH A 53 553 112 HOH HOH . 
F 4 HOH A 54 554 113 HOH HOH . 
F 4 HOH A 55 555 114 HOH HOH . 
F 4 HOH A 56 556 116 HOH HOH . 
F 4 HOH A 57 557 117 HOH HOH . 
F 4 HOH A 58 558 118 HOH HOH . 
F 4 HOH A 59 559 119 HOH HOH . 
F 4 HOH A 60 560 120 HOH HOH . 
F 4 HOH A 61 561 121 HOH HOH . 
F 4 HOH A 62 562 122 HOH HOH . 
F 4 HOH A 63 563 123 HOH HOH . 
F 4 HOH A 64 564 126 HOH HOH . 
F 4 HOH A 65 565 131 HOH HOH . 
F 4 HOH A 66 566 133 HOH HOH . 
F 4 HOH A 67 567 139 HOH HOH . 
F 4 HOH A 68 568 140 HOH HOH . 
F 4 HOH A 69 569 141 HOH HOH . 
G 4 HOH B 1 1501 5 HOH HOH . 
G 4 HOH B 2 1502 14 HOH HOH . 
G 4 HOH B 3 1503 16 HOH HOH . 
G 4 HOH B 4 1504 18 HOH HOH . 
G 4 HOH B 5 1505 20 HOH HOH . 
G 4 HOH B 6 1506 21 HOH HOH . 
G 4 HOH B 7 1507 25 HOH HOH . 
G 4 HOH B 8 1508 29 HOH HOH . 
G 4 HOH B 9 1509 30 HOH HOH . 
G 4 HOH B 10 1510 31 HOH HOH . 
G 4 HOH B 11 1511 32 HOH HOH . 
G 4 HOH B 12 1512 33 HOH HOH . 
G 4 HOH B 13 1513 34 HOH HOH . 
G 4 HOH B 14 1514 38 HOH HOH . 
G 4 HOH B 15 1515 41 HOH HOH . 
G 4 HOH B 16 1516 42 HOH HOH . 
G 4 HOH B 17 1517 45 HOH HOH . 
G 4 HOH B 18 1518 49 HOH HOH . 
G 4 HOH B 19 1519 53 HOH HOH . 
G 4 HOH B 20 1520 55 HOH HOH . 
G 4 HOH B 21 1521 59 HOH HOH . 
G 4 HOH B 22 1522 61 HOH HOH . 
G 4 HOH B 23 1523 64 HOH HOH . 
G 4 HOH B 24 1524 68 HOH HOH . 
G 4 HOH B 25 1525 69 HOH HOH . 
G 4 HOH B 26 1526 73 HOH HOH . 
G 4 HOH B 27 1527 75 HOH HOH . 
G 4 HOH B 28 1528 78 HOH HOH . 
G 4 HOH B 29 1529 82 HOH HOH . 
G 4 HOH B 30 1530 89 HOH HOH . 
G 4 HOH B 31 1531 92 HOH HOH . 
G 4 HOH B 32 1532 96 HOH HOH . 
G 4 HOH B 33 1533 98 HOH HOH . 
G 4 HOH B 34 1534 100 HOH HOH . 
G 4 HOH B 35 1535 102 HOH HOH . 
G 4 HOH B 36 1536 103 HOH HOH . 
G 4 HOH B 37 1537 106 HOH HOH . 
G 4 HOH B 38 1538 111 HOH HOH . 
G 4 HOH B 39 1539 115 HOH HOH . 
G 4 HOH B 40 1540 124 HOH HOH . 
G 4 HOH B 41 1541 125 HOH HOH . 
G 4 HOH B 42 1542 128 HOH HOH . 
G 4 HOH B 43 1543 129 HOH HOH . 
G 4 HOH B 44 1544 130 HOH HOH . 
G 4 HOH B 45 1545 134 HOH HOH . 
G 4 HOH B 46 1546 135 HOH HOH . 
G 4 HOH B 47 1547 136 HOH HOH . 
G 4 HOH B 48 1548 137 HOH HOH . 
G 4 HOH B 49 1549 138 HOH HOH . 
G 4 HOH B 50 1550 142 HOH HOH . 
G 4 HOH B 51 1551 144 HOH HOH . 
G 4 HOH B 52 1552 145 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CIT . . . D 3 1.959 -2.92 55.019 1 67.09 ? C1 CIT 500 A 1 
HETATM 2 O O1 CIT . . . D 3 1.371 -3.589 55.925 1 67.46 ? O1 CIT 500 A 1 
HETATM 3 O O2 CIT . . . D 3 2.648 -1.996 55.292 1 67.37 ? O2 CIT 500 A 1 
HETATM 4 C C2 CIT . . . D 3 1.764 -3.387 53.609 1 65.97 ? C2 CIT 500 A 1 
HETATM 5 C C3 CIT . . . D 3 2.488 -2.533 52.526 1 65.12 ? C3 CIT 500 A 1 
HETATM 6 O O7 CIT . . . D 3 3.903 -2.473 52.782 1 66.1 ? O7 CIT 500 A 1 
HETATM 7 C C4 CIT . . . D 3 2.26 -3.152 51.107 1 63.3 ? C4 CIT 500 A 1 
HETATM 8 C C5 CIT . . . D 3 3.114 -4.458 51.028 1 61.34 ? C5 CIT 500 A 1 
HETATM 9 O O3 CIT . . . D 3 4.339 -4.584 50.899 1 58.78 ? O3 CIT 500 A 1 
HETATM 10 O O4 CIT . . . D 3 2.306 -5.452 51.142 1 61.8 ? O4 CIT 500 A 1 
HETATM 11 C C6 CIT . . . D 3 2.199 -1.006 52.246 1 65.11 ? C6 CIT 500 A 1 
HETATM 12 O O5 CIT . . . D 3 2.675 -0.26 51.374 1 66.45 ? O5 CIT 500 A 1 
HETATM 13 O O6 CIT . . . D 3 1.344 -0.69 53.124 1 64.27 ? O6 CIT 500 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           358 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           13 
#