data_1YFZ
#
_model_server_result.job_id            LUZtnhjyOG8A428g5wivHA 
_model_server_result.datetime_utc      '2024-11-07 17:45:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1yfz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":2191}' 
#
_entry.id    1YFZ 
#
_exptl.entry_id    1YFZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1YFZ 
_cell.length_a            65.77 
_cell.length_b            137.73 
_cell.length_c            95.27 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1YFZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS tetrameric 4 author_and_software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L 1 1,2 
B,G,H,I,J,L 2 1,2 
A,C,D,E,F,K 3 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_656 -x+1,y,-z+3/2 -1 0 0 0 1 0 0 0 -1 65.77 0 142.905 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 H N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 125 A GLU 101 1_555 D MG MG . A MG 1191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? 
metalc ? metalc2 A OD1 ASP 126 A ASP 102 1_555 D MG MG . A MG 1191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc3 A OD1 ASP 185 A ASP 161 1_555 E MG MG . A MG 1192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? 
metalc ? metalc4 D MG MG . A MG 1191 1_555 K O HOH . A HOH 1251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? 
metalc ? metalc5 D MG MG . A MG 1191 1_555 K O HOH . A HOH 1269 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? 
metalc ? metalc6 D MG MG . A MG 1191 1_555 K O HOH . A HOH 1270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
metalc ? metalc7 E MG MG . A MG 1192 1_555 F O2P IMP . A IMP 1210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc8 E MG MG . A MG 1192 1_555 K O HOH . A HOH 1236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc9 E MG MG . A MG 1192 1_555 K O HOH . A HOH 1257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? 
metalc ? metalc10 E MG MG . A MG 1192 1_555 K O HOH . A HOH 1260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? 
metalc ? metalc11 E MG MG . A MG 1192 1_555 K O HOH . A HOH 1274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? 
metalc ? metalc12 B OE2 GLU 125 B GLU 101 1_555 H MG MG . B MG 2191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.908 ? 
metalc ? metalc13 B OD1 ASP 126 B ASP 102 1_555 H MG MG . B MG 2191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
metalc ? metalc14 B OD1 ASP 185 B ASP 161 1_555 I MG MG . B MG 2192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? 
metalc ? metalc15 H MG MG . B MG 2191 1_555 L O HOH . B HOH 2273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? 
metalc ? metalc16 H MG MG . B MG 2191 1_555 L O HOH . B HOH 2279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
metalc ? metalc17 H MG MG . B MG 2191 1_555 L O HOH . B HOH 2285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.79 ? 
metalc ? metalc18 H MG MG . B MG 2191 1_555 L O HOH . B HOH 2288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? 
metalc ? metalc19 I MG MG . B MG 2192 1_555 J O2P IMP . B IMP 2210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? 
metalc ? metalc20 I MG MG . B MG 2192 1_555 L O HOH . B HOH 2253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? 
metalc ? metalc21 I MG MG . B MG 2192 1_555 L O HOH . B HOH 2258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? 
metalc ? metalc22 I MG MG . B MG 2192 1_555 L O HOH . B HOH 2278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.868 ? 
metalc ? metalc23 I MG MG . B MG 2192 1_555 L O HOH . B HOH 2283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1YFZ 
_atom_sites.fract_transf_matrix[1][1]    0.015205 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007261 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010496 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ACT A 1 1200 200 ACT ACT . 
D 3 MG A 1 1191 191 MG MG2 . 
E 3 MG A 1 1192 192 MG MG2 . 
F 4 IMP A 1 1210 210 IMP IMP . 
G 2 ACT B 1 2200 200 ACT ACT . 
H 3 MG B 1 2191 191 MG MG2 . 
I 3 MG B 1 2192 192 MG MG2 . 
J 4 IMP B 1 2210 210 IMP IMP . 
K 5 HOH A 1 1211 2 HOH TIP . 
K 5 HOH A 2 1212 7 HOH TIP . 
K 5 HOH A 3 1213 11 HOH TIP . 
K 5 HOH A 4 1214 14 HOH TIP . 
K 5 HOH A 5 1215 17 HOH TIP . 
K 5 HOH A 6 1216 18 HOH TIP . 
K 5 HOH A 7 1217 19 HOH TIP . 
K 5 HOH A 8 1218 20 HOH TIP . 
K 5 HOH A 9 1219 22 HOH TIP . 
K 5 HOH A 10 1220 23 HOH TIP . 
K 5 HOH A 11 1221 27 HOH TIP . 
K 5 HOH A 12 1222 31 HOH TIP . 
K 5 HOH A 13 1223 38 HOH TIP . 
K 5 HOH A 14 1224 40 HOH TIP . 
K 5 HOH A 15 1225 41 HOH TIP . 
K 5 HOH A 16 1226 45 HOH TIP . 
K 5 HOH A 17 1227 53 HOH TIP . 
K 5 HOH A 18 1228 56 HOH TIP . 
K 5 HOH A 19 1229 57 HOH TIP . 
K 5 HOH A 20 1230 60 HOH TIP . 
K 5 HOH A 21 1231 62 HOH TIP . 
K 5 HOH A 22 1232 63 HOH TIP . 
K 5 HOH A 23 1233 65 HOH TIP . 
K 5 HOH A 24 1234 66 HOH TIP . 
K 5 HOH A 25 1235 67 HOH TIP . 
K 5 HOH A 26 1236 68 HOH TIP . 
K 5 HOH A 27 1237 69 HOH TIP . 
K 5 HOH A 28 1238 70 HOH TIP . 
K 5 HOH A 29 1239 73 HOH TIP . 
K 5 HOH A 30 1240 74 HOH TIP . 
K 5 HOH A 31 1241 77 HOH TIP . 
K 5 HOH A 32 1242 79 HOH TIP . 
K 5 HOH A 33 1243 81 HOH TIP . 
K 5 HOH A 34 1244 82 HOH TIP . 
K 5 HOH A 35 1245 85 HOH TIP . 
K 5 HOH A 36 1246 87 HOH TIP . 
K 5 HOH A 37 1247 89 HOH TIP . 
K 5 HOH A 38 1248 90 HOH TIP . 
K 5 HOH A 39 1249 93 HOH TIP . 
K 5 HOH A 40 1250 94 HOH TIP . 
K 5 HOH A 41 1251 95 HOH TIP . 
K 5 HOH A 42 1252 96 HOH TIP . 
K 5 HOH A 43 1253 98 HOH TIP . 
K 5 HOH A 44 1254 100 HOH TIP . 
K 5 HOH A 45 1255 102 HOH TIP . 
K 5 HOH A 46 1256 104 HOH TIP . 
K 5 HOH A 47 1257 106 HOH TIP . 
K 5 HOH A 48 1258 110 HOH TIP . 
K 5 HOH A 49 1259 112 HOH TIP . 
K 5 HOH A 50 1260 115 HOH TIP . 
K 5 HOH A 51 1261 118 HOH TIP . 
K 5 HOH A 52 1262 119 HOH TIP . 
K 5 HOH A 53 1263 125 HOH TIP . 
K 5 HOH A 54 1264 126 HOH TIP . 
K 5 HOH A 55 1265 130 HOH TIP . 
K 5 HOH A 56 1266 133 HOH TIP . 
K 5 HOH A 57 1267 136 HOH TIP . 
K 5 HOH A 58 1268 138 HOH TIP . 
K 5 HOH A 59 1269 139 HOH TIP . 
K 5 HOH A 60 1270 140 HOH TIP . 
K 5 HOH A 61 1271 141 HOH TIP . 
K 5 HOH A 62 1272 142 HOH TIP . 
K 5 HOH A 63 1273 143 HOH TIP . 
K 5 HOH A 64 1274 145 HOH TIP . 
K 5 HOH A 65 1275 146 HOH TIP . 
K 5 HOH A 66 1276 148 HOH TIP . 
K 5 HOH A 67 1277 149 HOH TIP . 
K 5 HOH A 68 1278 150 HOH TIP . 
K 5 HOH A 69 1279 154 HOH TIP . 
K 5 HOH A 70 1280 156 HOH TIP . 
K 5 HOH A 71 1281 158 HOH TIP . 
K 5 HOH A 72 1282 160 HOH TIP . 
K 5 HOH A 73 1283 161 HOH TIP . 
K 5 HOH A 74 1284 162 HOH TIP . 
K 5 HOH A 75 1285 165 HOH TIP . 
K 5 HOH A 76 1286 166 HOH TIP . 
K 5 HOH A 77 1287 168 HOH TIP . 
L 5 HOH B 1 2211 1 HOH TIP . 
L 5 HOH B 2 2212 3 HOH TIP . 
L 5 HOH B 3 2213 4 HOH TIP . 
L 5 HOH B 4 2214 5 HOH TIP . 
L 5 HOH B 5 2215 6 HOH TIP . 
L 5 HOH B 6 2216 8 HOH TIP . 
L 5 HOH B 7 2217 9 HOH TIP . 
L 5 HOH B 8 2218 10 HOH TIP . 
L 5 HOH B 9 2219 13 HOH TIP . 
L 5 HOH B 10 2220 15 HOH TIP . 
L 5 HOH B 11 2221 16 HOH TIP . 
L 5 HOH B 12 2222 21 HOH TIP . 
L 5 HOH B 13 2223 24 HOH TIP . 
L 5 HOH B 14 2224 25 HOH TIP . 
L 5 HOH B 15 2225 26 HOH TIP . 
L 5 HOH B 16 2226 28 HOH TIP . 
L 5 HOH B 17 2227 29 HOH TIP . 
L 5 HOH B 18 2228 30 HOH TIP . 
L 5 HOH B 19 2229 32 HOH TIP . 
L 5 HOH B 20 2230 34 HOH TIP . 
L 5 HOH B 21 2231 35 HOH TIP . 
L 5 HOH B 22 2232 36 HOH TIP . 
L 5 HOH B 23 2233 37 HOH TIP . 
L 5 HOH B 24 2234 39 HOH TIP . 
L 5 HOH B 25 2235 42 HOH TIP . 
L 5 HOH B 26 2236 43 HOH TIP . 
L 5 HOH B 27 2237 44 HOH TIP . 
L 5 HOH B 28 2238 46 HOH TIP . 
L 5 HOH B 29 2239 47 HOH TIP . 
L 5 HOH B 30 2240 48 HOH TIP . 
L 5 HOH B 31 2241 49 HOH TIP . 
L 5 HOH B 32 2242 50 HOH TIP . 
L 5 HOH B 33 2243 51 HOH TIP . 
L 5 HOH B 34 2244 52 HOH TIP . 
L 5 HOH B 35 2245 54 HOH TIP . 
L 5 HOH B 36 2246 55 HOH TIP . 
L 5 HOH B 37 2247 58 HOH TIP . 
L 5 HOH B 38 2248 59 HOH TIP . 
L 5 HOH B 39 2249 61 HOH TIP . 
L 5 HOH B 40 2250 64 HOH TIP . 
L 5 HOH B 41 2251 71 HOH TIP . 
L 5 HOH B 42 2252 72 HOH TIP . 
L 5 HOH B 43 2253 75 HOH TIP . 
L 5 HOH B 44 2254 76 HOH TIP . 
L 5 HOH B 45 2255 78 HOH TIP . 
L 5 HOH B 46 2256 80 HOH TIP . 
L 5 HOH B 47 2257 83 HOH TIP . 
L 5 HOH B 48 2258 84 HOH TIP . 
L 5 HOH B 49 2259 86 HOH TIP . 
L 5 HOH B 50 2260 88 HOH TIP . 
L 5 HOH B 51 2261 91 HOH TIP . 
L 5 HOH B 52 2262 92 HOH TIP . 
L 5 HOH B 53 2263 97 HOH TIP . 
L 5 HOH B 54 2264 99 HOH TIP . 
L 5 HOH B 55 2265 101 HOH TIP . 
L 5 HOH B 56 2266 103 HOH TIP . 
L 5 HOH B 57 2267 105 HOH TIP . 
L 5 HOH B 58 2268 107 HOH TIP . 
L 5 HOH B 59 2269 108 HOH TIP . 
L 5 HOH B 60 2270 109 HOH TIP . 
L 5 HOH B 61 2271 111 HOH TIP . 
L 5 HOH B 62 2272 113 HOH TIP . 
L 5 HOH B 63 2273 114 HOH TIP . 
L 5 HOH B 64 2274 116 HOH TIP . 
L 5 HOH B 65 2275 117 HOH TIP . 
L 5 HOH B 66 2276 120 HOH TIP . 
L 5 HOH B 67 2277 121 HOH TIP . 
L 5 HOH B 68 2278 122 HOH TIP . 
L 5 HOH B 69 2279 123 HOH TIP . 
L 5 HOH B 70 2280 124 HOH TIP . 
L 5 HOH B 71 2281 127 HOH TIP . 
L 5 HOH B 72 2282 128 HOH TIP . 
L 5 HOH B 73 2283 129 HOH TIP . 
L 5 HOH B 74 2284 131 HOH TIP . 
L 5 HOH B 75 2285 132 HOH TIP . 
L 5 HOH B 76 2286 134 HOH TIP . 
L 5 HOH B 77 2287 135 HOH TIP . 
L 5 HOH B 78 2288 137 HOH TIP . 
L 5 HOH B 79 2289 144 HOH TIP . 
L 5 HOH B 80 2290 147 HOH TIP . 
L 5 HOH B 81 2291 151 HOH TIP . 
L 5 HOH B 82 2292 152 HOH TIP . 
L 5 HOH B 83 2293 153 HOH TIP . 
L 5 HOH B 84 2294 155 HOH TIP . 
L 5 HOH B 85 2295 157 HOH TIP . 
L 5 HOH B 86 2296 159 HOH TIP . 
L 5 HOH B 87 2297 163 HOH TIP . 
L 5 HOH B 88 2298 164 HOH TIP . 
L 5 HOH B 89 2299 167 HOH TIP . 
L 5 HOH B 90 2300 169 HOH TIP . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         H 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               23.807 
_atom_site.Cartn_y               8.005 
_atom_site.Cartn_z               63.53 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        37.05 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           2191 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           335 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#