data_1YGH
#
_model_server_result.job_id            xxmWR5Dlzg-DMpR84iE0Xg 
_model_server_result.datetime_utc      '2024-11-28 13:13:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ygh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    1YGH 
#
_exptl.entry_id    1YGH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.71 
_cell.angle_gamma         90 
_cell.entry_id            1YGH 
_cell.length_a            40.04 
_cell.length_b            66.51 
_cell.length_c            80.19 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1YGH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     1YGH 
_atom_sites.fract_transf_matrix[1][1]    0.024975 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003381 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015035 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012584 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 600 600 GOL GOL . 
D 2 GOL B 1 601 601 GOL GOL . 
E 3 HOH A 1 300 300 HOH HOH . 
E 3 HOH A 2 301 301 HOH HOH . 
E 3 HOH A 3 309 309 HOH HOH . 
E 3 HOH A 4 311 311 HOH HOH . 
E 3 HOH A 5 313 313 HOH HOH . 
E 3 HOH A 6 314 314 HOH HOH . 
E 3 HOH A 7 315 315 HOH HOH . 
E 3 HOH A 8 317 317 HOH HOH . 
E 3 HOH A 9 319 319 HOH HOH . 
E 3 HOH A 10 321 321 HOH HOH . 
E 3 HOH A 11 324 324 HOH HOH . 
E 3 HOH A 12 327 327 HOH HOH . 
E 3 HOH A 13 329 329 HOH HOH . 
E 3 HOH A 14 331 331 HOH HOH . 
E 3 HOH A 15 334 334 HOH HOH . 
E 3 HOH A 16 336 336 HOH HOH . 
E 3 HOH A 17 337 337 HOH HOH . 
E 3 HOH A 18 339 339 HOH HOH . 
E 3 HOH A 19 342 342 HOH HOH . 
E 3 HOH A 20 343 343 HOH HOH . 
E 3 HOH A 21 344 344 HOH HOH . 
E 3 HOH A 22 345 345 HOH HOH . 
E 3 HOH A 23 346 346 HOH HOH . 
E 3 HOH A 24 347 347 HOH HOH . 
E 3 HOH A 25 349 349 HOH HOH . 
E 3 HOH A 26 352 352 HOH HOH . 
E 3 HOH A 27 353 353 HOH HOH . 
E 3 HOH A 28 354 354 HOH HOH . 
E 3 HOH A 29 356 356 HOH HOH . 
E 3 HOH A 30 358 358 HOH HOH . 
E 3 HOH A 31 361 361 HOH HOH . 
E 3 HOH A 32 366 366 HOH HOH . 
E 3 HOH A 33 367 367 HOH HOH . 
E 3 HOH A 34 368 368 HOH HOH . 
E 3 HOH A 35 373 373 HOH HOH . 
E 3 HOH A 36 374 374 HOH HOH . 
E 3 HOH A 37 375 375 HOH HOH . 
E 3 HOH A 38 378 378 HOH HOH . 
E 3 HOH A 39 379 379 HOH HOH . 
E 3 HOH A 40 380 380 HOH HOH . 
E 3 HOH A 41 381 381 HOH HOH . 
E 3 HOH A 42 383 383 HOH HOH . 
E 3 HOH A 43 384 384 HOH HOH . 
E 3 HOH A 44 385 385 HOH HOH . 
E 3 HOH A 45 386 386 HOH HOH . 
E 3 HOH A 46 387 387 HOH HOH . 
E 3 HOH A 47 392 392 HOH HOH . 
E 3 HOH A 48 393 393 HOH HOH . 
E 3 HOH A 49 394 394 HOH HOH . 
E 3 HOH A 50 397 397 HOH HOH . 
E 3 HOH A 51 401 401 HOH HOH . 
E 3 HOH A 52 403 403 HOH HOH . 
E 3 HOH A 53 405 405 HOH HOH . 
E 3 HOH A 54 406 406 HOH HOH . 
E 3 HOH A 55 408 408 HOH HOH . 
E 3 HOH A 56 411 411 HOH HOH . 
E 3 HOH A 57 412 412 HOH HOH . 
E 3 HOH A 58 414 414 HOH HOH . 
E 3 HOH A 59 415 415 HOH HOH . 
E 3 HOH A 60 416 416 HOH HOH . 
E 3 HOH A 61 418 418 HOH HOH . 
E 3 HOH A 62 420 420 HOH HOH . 
E 3 HOH A 63 422 422 HOH HOH . 
E 3 HOH A 64 423 423 HOH HOH . 
E 3 HOH A 65 426 426 HOH HOH . 
E 3 HOH A 66 428 428 HOH HOH . 
E 3 HOH A 67 429 429 HOH HOH . 
E 3 HOH A 68 431 431 HOH HOH . 
E 3 HOH A 69 432 432 HOH HOH . 
E 3 HOH A 70 435 435 HOH HOH . 
E 3 HOH A 71 436 436 HOH HOH . 
E 3 HOH A 72 437 437 HOH HOH . 
E 3 HOH A 73 438 438 HOH HOH . 
E 3 HOH A 74 442 442 HOH HOH . 
E 3 HOH A 75 443 443 HOH HOH . 
E 3 HOH A 76 446 446 HOH HOH . 
E 3 HOH A 77 447 447 HOH HOH . 
E 3 HOH A 78 448 448 HOH HOH . 
E 3 HOH A 79 449 449 HOH HOH . 
E 3 HOH A 80 450 450 HOH HOH . 
E 3 HOH A 81 452 452 HOH HOH . 
E 3 HOH A 82 453 453 HOH HOH . 
E 3 HOH A 83 458 458 HOH HOH . 
E 3 HOH A 84 460 460 HOH HOH . 
E 3 HOH A 85 461 461 HOH HOH . 
E 3 HOH A 86 463 463 HOH HOH . 
E 3 HOH A 87 464 464 HOH HOH . 
E 3 HOH A 88 468 468 HOH HOH . 
E 3 HOH A 89 469 469 HOH HOH . 
E 3 HOH A 90 470 470 HOH HOH . 
E 3 HOH A 91 472 472 HOH HOH . 
E 3 HOH A 92 473 473 HOH HOH . 
E 3 HOH A 93 474 474 HOH HOH . 
E 3 HOH A 94 475 475 HOH HOH . 
E 3 HOH A 95 476 476 HOH HOH . 
E 3 HOH A 96 479 479 HOH HOH . 
E 3 HOH A 97 480 480 HOH HOH . 
E 3 HOH A 98 483 483 HOH HOH . 
E 3 HOH A 99 484 484 HOH HOH . 
E 3 HOH A 100 485 485 HOH HOH . 
E 3 HOH A 101 488 488 HOH HOH . 
E 3 HOH A 102 489 489 HOH HOH . 
E 3 HOH A 103 490 490 HOH HOH . 
E 3 HOH A 104 495 495 HOH HOH . 
E 3 HOH A 105 496 496 HOH HOH . 
E 3 HOH A 106 503 503 HOH HOH . 
E 3 HOH A 107 505 505 HOH HOH . 
E 3 HOH A 108 507 507 HOH HOH . 
E 3 HOH A 109 508 508 HOH HOH . 
E 3 HOH A 110 510 510 HOH HOH . 
E 3 HOH A 111 511 511 HOH HOH . 
E 3 HOH A 112 512 512 HOH HOH . 
E 3 HOH A 113 513 513 HOH HOH . 
F 3 HOH B 1 302 302 HOH HOH . 
F 3 HOH B 2 303 303 HOH HOH . 
F 3 HOH B 3 304 304 HOH HOH . 
F 3 HOH B 4 305 305 HOH HOH . 
F 3 HOH B 5 306 306 HOH HOH . 
F 3 HOH B 6 307 307 HOH HOH . 
F 3 HOH B 7 308 308 HOH HOH . 
F 3 HOH B 8 310 310 HOH HOH . 
F 3 HOH B 9 312 312 HOH HOH . 
F 3 HOH B 10 316 316 HOH HOH . 
F 3 HOH B 11 318 318 HOH HOH . 
F 3 HOH B 12 320 320 HOH HOH . 
F 3 HOH B 13 322 322 HOH HOH . 
F 3 HOH B 14 323 323 HOH HOH . 
F 3 HOH B 15 325 325 HOH HOH . 
F 3 HOH B 16 326 326 HOH HOH . 
F 3 HOH B 17 328 328 HOH HOH . 
F 3 HOH B 18 330 330 HOH HOH . 
F 3 HOH B 19 332 332 HOH HOH . 
F 3 HOH B 20 333 333 HOH HOH . 
F 3 HOH B 21 335 335 HOH HOH . 
F 3 HOH B 22 338 338 HOH HOH . 
F 3 HOH B 23 340 340 HOH HOH . 
F 3 HOH B 24 341 341 HOH HOH . 
F 3 HOH B 25 348 348 HOH HOH . 
F 3 HOH B 26 350 350 HOH HOH . 
F 3 HOH B 27 351 351 HOH HOH . 
F 3 HOH B 28 355 355 HOH HOH . 
F 3 HOH B 29 357 357 HOH HOH . 
F 3 HOH B 30 359 359 HOH HOH . 
F 3 HOH B 31 360 360 HOH HOH . 
F 3 HOH B 32 362 362 HOH HOH . 
F 3 HOH B 33 363 363 HOH HOH . 
F 3 HOH B 34 364 364 HOH HOH . 
F 3 HOH B 35 365 365 HOH HOH . 
F 3 HOH B 36 369 369 HOH HOH . 
F 3 HOH B 37 370 370 HOH HOH . 
F 3 HOH B 38 371 371 HOH HOH . 
F 3 HOH B 39 372 372 HOH HOH . 
F 3 HOH B 40 376 376 HOH HOH . 
F 3 HOH B 41 377 377 HOH HOH . 
F 3 HOH B 42 382 382 HOH HOH . 
F 3 HOH B 43 388 388 HOH HOH . 
F 3 HOH B 44 389 389 HOH HOH . 
F 3 HOH B 45 390 390 HOH HOH . 
F 3 HOH B 46 391 391 HOH HOH . 
F 3 HOH B 47 395 395 HOH HOH . 
F 3 HOH B 48 396 396 HOH HOH . 
F 3 HOH B 49 398 398 HOH HOH . 
F 3 HOH B 50 399 399 HOH HOH . 
F 3 HOH B 51 400 400 HOH HOH . 
F 3 HOH B 52 402 402 HOH HOH . 
F 3 HOH B 53 404 404 HOH HOH . 
F 3 HOH B 54 407 407 HOH HOH . 
F 3 HOH B 55 409 409 HOH HOH . 
F 3 HOH B 56 410 410 HOH HOH . 
F 3 HOH B 57 413 413 HOH HOH . 
F 3 HOH B 58 417 417 HOH HOH . 
F 3 HOH B 59 419 419 HOH HOH . 
F 3 HOH B 60 421 421 HOH HOH . 
F 3 HOH B 61 424 424 HOH HOH . 
F 3 HOH B 62 425 425 HOH HOH . 
F 3 HOH B 63 427 427 HOH HOH . 
F 3 HOH B 64 430 430 HOH HOH . 
F 3 HOH B 65 433 433 HOH HOH . 
F 3 HOH B 66 434 434 HOH HOH . 
F 3 HOH B 67 439 439 HOH HOH . 
F 3 HOH B 68 440 440 HOH HOH . 
F 3 HOH B 69 441 441 HOH HOH . 
F 3 HOH B 70 444 444 HOH HOH . 
F 3 HOH B 71 445 445 HOH HOH . 
F 3 HOH B 72 451 451 HOH HOH . 
F 3 HOH B 73 454 454 HOH HOH . 
F 3 HOH B 74 455 455 HOH HOH . 
F 3 HOH B 75 456 456 HOH HOH . 
F 3 HOH B 76 457 457 HOH HOH . 
F 3 HOH B 77 459 459 HOH HOH . 
F 3 HOH B 78 462 462 HOH HOH . 
F 3 HOH B 79 465 465 HOH HOH . 
F 3 HOH B 80 466 466 HOH HOH . 
F 3 HOH B 81 467 467 HOH HOH . 
F 3 HOH B 82 471 471 HOH HOH . 
F 3 HOH B 83 477 477 HOH HOH . 
F 3 HOH B 84 478 478 HOH HOH . 
F 3 HOH B 85 481 481 HOH HOH . 
F 3 HOH B 86 482 482 HOH HOH . 
F 3 HOH B 87 486 486 HOH HOH . 
F 3 HOH B 88 487 487 HOH HOH . 
F 3 HOH B 89 491 491 HOH HOH . 
F 3 HOH B 90 492 492 HOH HOH . 
F 3 HOH B 91 493 493 HOH HOH . 
F 3 HOH B 92 494 494 HOH HOH . 
F 3 HOH B 93 497 497 HOH HOH . 
F 3 HOH B 94 498 498 HOH HOH . 
F 3 HOH B 95 499 499 HOH HOH . 
F 3 HOH B 96 500 500 HOH HOH . 
F 3 HOH B 97 501 501 HOH HOH . 
F 3 HOH B 98 502 502 HOH HOH . 
F 3 HOH B 99 504 504 HOH HOH . 
F 3 HOH B 100 506 506 HOH HOH . 
F 3 HOH B 101 509 509 HOH HOH . 
F 3 HOH B 102 514 514 HOH HOH . 
F 3 HOH B 103 515 515 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 2 34.649 39.402 35.941 1 24.33 ? C1 GOL 601 B 1 
HETATM 2 O O1 GOL . . . D 2 35.913 39.06 36.519 1 26.03 ? O1 GOL 601 B 1 
HETATM 3 C C2 GOL . . . D 2 33.609 38.262 36.152 1 23.29 ? C2 GOL 601 B 1 
HETATM 4 O O2 GOL . . . D 2 32.39 38.607 35.574 1 20.97 ? O2 GOL 601 B 1 
HETATM 5 C C3 GOL . . . D 2 33.323 37.957 37.636 1 24 ? C3 GOL 601 B 1 
HETATM 6 O O3 GOL . . . D 2 34.163 36.951 38.157 1 25.18 ? O3 GOL 601 B 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#